Wall clock time and date at job start Tue Mar 31 2020 10:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35898 * 117.00122 * 2 1 4 4 C 1.38729 * 120.05429 * 179.97438 * 3 2 1 5 5 C 1.38149 * 119.94081 * 179.97438 * 4 3 2 6 6 C 1.38266 * 120.05825 * 359.97438 * 5 4 3 7 7 C 1.50694 * 119.94606 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.48976 * 339.97357 * 7 6 5 9 9 C 1.53090 * 109.47887 * 100.00401 * 7 6 5 10 10 C 1.53179 * 109.16441 * 177.59404 * 9 7 6 11 11 H 1.09004 * 109.54608 * 62.97292 * 10 9 7 12 12 N 1.46897 * 109.54752 * 183.15100 * 10 9 7 13 13 C 1.46899 * 110.99642 * 66.04641 * 12 10 9 14 14 C 1.46895 * 111.00032 * 189.99754 * 12 10 9 15 15 C 1.50706 * 109.47182 * 170.00046 * 14 12 10 16 16 H 1.08005 * 119.99758 * 0.02562 * 15 14 12 17 17 C 1.37871 * 120.00102 * 180.02562 * 15 14 12 18 18 N 1.31516 * 120.00217 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47483 * 269.99808 * 19 17 15 21 21 H 1.48499 * 109.47134 * 30.00322 * 19 17 15 22 22 H 1.48507 * 109.46904 * 150.00145 * 19 17 15 23 23 C 1.53182 * 109.03271 * 303.02032 * 10 9 7 24 24 C 1.53091 * 109.16593 * 56.97910 * 23 10 9 25 25 O 1.42900 * 109.41269 * 302.39327 * 24 23 10 26 26 C 1.38266 * 120.10954 * 0.28010 * 6 5 4 27 27 C 1.38146 * 120.05521 * 359.44786 * 26 6 5 28 28 H 1.08998 * 109.46766 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46957 * 300.00004 * 1 2 3 30 30 H 1.08992 * 109.46930 * 60.00250 * 1 2 3 31 31 H 1.07996 * 120.02960 * 359.97438 * 4 3 2 32 32 H 1.07996 * 119.96865 * 180.02562 * 5 4 3 33 33 H 1.08994 * 109.52737 * 57.68676 * 9 7 6 34 34 H 1.09004 * 109.57479 * 297.52517 * 9 7 6 35 35 H 1.09008 * 109.47172 * 183.95912 * 13 12 10 36 36 H 1.09004 * 109.47214 * 303.95284 * 13 12 10 37 37 H 1.08996 * 109.47566 * 63.95573 * 13 12 10 38 38 H 1.09001 * 109.47613 * 50.00392 * 14 12 10 39 39 H 1.09006 * 109.47521 * 290.00010 * 14 12 10 40 40 H 0.97001 * 119.99646 * 359.97438 * 18 17 15 41 41 H 1.09008 * 109.52193 * 176.88624 * 23 10 9 42 42 H 1.08991 * 109.52213 * 297.07025 * 23 10 9 43 43 H 1.08994 * 109.48100 * 182.40264 * 24 23 10 44 44 H 1.09001 * 109.48823 * 62.37786 * 24 23 10 45 45 H 1.07998 * 119.97280 * 179.70201 * 26 6 5 46 46 H 1.08000 * 120.02944 * 180.27743 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0461 1.2108 0.0000 4 6 3.4314 1.2847 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 -0.0016 7 6 3.9861 5.0185 -0.0028 8 1 5.0113 4.9046 0.3497 9 6 3.9951 5.5856 -1.4247 10 6 4.6379 6.9759 -1.4075 11 1 5.6768 6.8934 -1.0881 12 7 4.5830 7.5594 -2.7545 13 6 3.1951 7.8220 -3.1581 14 6 5.3940 8.7817 -2.8321 15 6 5.5148 9.2139 -4.2708 16 1 5.0364 8.6383 -5.0496 17 6 6.2358 10.3441 -4.5929 18 7 6.8187 11.0447 -3.6448 19 14 6.3861 10.8793 -6.3763 20 1 7.5828 10.2444 -6.9846 21 1 5.1715 10.4625 -7.1222 22 1 6.5234 12.3566 -6.4398 23 6 3.8687 7.8698 -0.4299 24 6 3.8646 7.2144 0.9536 25 8 3.2819 5.9129 0.8609 26 6 1.9212 3.6047 0.0032 27 6 1.2916 2.3751 -0.0020 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 4.0209 0.3798 0.0014 32 1 5.1345 2.5749 0.0000 33 1 2.9721 5.6618 -1.7930 34 1 4.5690 4.9271 -2.0769 35 1 3.1783 8.1878 -4.1849 36 1 2.6167 6.9005 -3.0914 37 1 2.7604 8.5724 -2.4979 38 1 6.3868 8.5855 -2.4273 39 1 4.9157 9.5726 -2.2542 40 1 6.7410 10.7665 -2.7188 41 1 4.3527 8.8447 -0.3698 42 1 2.8432 7.9922 -0.7781 43 1 3.2823 7.8253 1.6434 44 1 4.8881 7.1293 1.3187 45 1 1.3343 4.5114 0.0068 46 1 0.2130 2.3201 -0.0028 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168628394.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:05 Heat of formation + Delta-G solvation = -77.448824 kcal Electronic energy + Delta-G solvation = -25178.884487 eV Core-core repulsion = 21646.832475 eV Total energy + Delta-G solvation = -3532.052013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.43507 -40.66761 -38.68891 -37.84126 -35.18572 -33.40134 -32.56991 -32.02667 -30.15716 -28.81942 -28.12329 -27.13255 -25.25275 -24.57803 -23.77994 -23.11149 -21.81008 -20.59147 -19.12503 -18.91123 -17.62224 -17.56976 -16.85719 -16.69400 -16.62818 -16.07577 -15.76175 -15.67265 -15.37011 -15.29988 -14.95859 -14.83290 -14.55986 -14.29288 -13.98053 -13.66316 -13.49500 -13.36099 -12.95868 -12.88925 -12.80580 -12.58641 -12.50678 -12.21055 -12.12775 -11.93578 -11.90146 -11.88675 -11.71570 -11.27748 -10.81344 -10.65450 -10.54581 -9.96438 -9.10152 -9.06953 -8.68570 -6.39319 0.34906 0.40342 1.52340 1.61275 1.79324 2.37184 2.54144 2.59556 2.85628 3.11692 3.17642 3.69192 3.72523 3.84635 3.94302 3.97040 4.01520 4.13326 4.15838 4.31089 4.38158 4.39311 4.39374 4.48043 4.53120 4.56370 4.61247 4.66230 4.72269 4.74064 4.78985 4.82153 4.90302 4.97851 5.03282 5.08801 5.17655 5.24386 5.26414 5.38347 5.61384 5.76372 5.77821 5.98206 6.20174 6.36010 6.41135 6.43190 6.63940 7.40608 8.69969 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.002785 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.996811 B =10051.120567 C =10565.434001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.117 3.883 4 C -0.161 4.161 5 C -0.071 4.071 6 C -0.126 4.126 7 C 0.143 3.857 8 H 0.073 0.927 9 C -0.119 4.119 10 C 0.080 3.920 11 H 0.065 0.935 12 N -0.537 5.537 13 C 0.041 3.959 14 C 0.197 3.803 15 C -0.599 4.599 16 H 0.053 0.947 17 C -0.038 4.038 18 N -0.938 5.938 19 Si 1.122 2.878 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.282 1.282 23 C -0.183 4.183 24 C 0.074 3.926 25 O -0.383 6.383 26 C -0.062 4.062 27 C -0.212 4.212 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.016 0.984 38 H -0.005 1.005 39 H -0.037 1.037 40 H 0.253 0.747 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.127 0.873 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.270 -19.901 10.365 25.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.072 3.928 4 C -0.180 4.180 5 C -0.089 4.089 6 C -0.127 4.127 7 C 0.085 3.915 8 H 0.091 0.909 9 C -0.157 4.157 10 C -0.029 4.029 11 H 0.083 0.917 12 N -0.259 5.259 13 C -0.107 4.107 14 C 0.071 3.929 15 C -0.638 4.638 16 H 0.071 0.929 17 C -0.235 4.235 18 N -0.575 5.575 19 Si 0.944 3.056 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.208 1.208 23 C -0.222 4.222 24 C -0.003 4.003 25 O -0.302 6.302 26 C -0.080 4.080 27 C -0.231 4.231 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.034 0.966 38 H 0.013 0.987 39 H -0.019 1.019 40 H 0.063 0.937 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.129 0.871 44 H 0.077 0.923 45 H 0.145 0.855 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -11.515 -19.358 9.135 24.306 hybrid contribution -0.761 0.160 1.505 1.694 sum -12.277 -19.198 10.640 25.149 Atomic orbital electron populations 1.23335 0.76560 1.05571 1.02168 1.86042 1.23387 1.26736 1.88627 1.19255 0.92789 0.84572 0.96229 1.20594 0.91668 0.98947 1.06752 1.20988 1.00811 0.90398 0.96685 1.19523 0.94236 0.93314 1.05605 1.20761 0.95006 0.86772 0.88994 0.90866 1.22136 1.01636 0.94868 0.97099 1.21831 0.98708 0.94628 0.87769 0.91696 1.62124 1.11038 1.28938 1.23848 1.22222 0.88743 0.99679 1.00088 1.19493 0.91079 0.86093 0.96245 1.22330 1.35724 1.12366 0.93342 0.92902 1.27390 0.92633 0.93717 1.09749 1.70903 1.43976 1.41309 1.01352 0.82860 0.77391 0.76048 0.69340 1.19865 1.19517 1.20800 1.22811 1.01650 0.99697 0.98034 1.22528 0.99288 0.83303 0.95173 1.87889 1.53863 1.22445 1.66011 1.20884 0.94074 0.97557 0.95505 1.21423 1.01075 0.91729 1.08826 0.86203 0.91801 0.91951 0.83759 0.83499 0.91222 0.90463 0.92871 0.90458 0.96582 0.98678 1.01937 0.93728 0.92825 0.91108 0.87081 0.92344 0.85468 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.33 -6.30 10.50 -92.40 -0.97 -7.27 16 3 C 0.12 2.43 6.69 22.51 0.15 2.58 16 4 C -0.16 -3.25 9.99 22.37 0.22 -3.03 16 5 C -0.07 -1.46 9.66 22.26 0.22 -1.24 16 6 C -0.13 -2.95 4.98 -19.85 -0.10 -3.05 16 7 C 0.14 3.58 2.85 29.88 0.09 3.66 16 8 H 0.07 1.71 8.00 -2.39 -0.02 1.69 16 9 C -0.12 -3.46 4.68 30.68 0.14 -3.32 16 10 C 0.08 2.79 2.28 45.04 0.10 2.89 16 11 H 0.06 2.38 7.93 -2.38 -0.02 2.36 16 12 N -0.54 -23.40 4.71 -900.88 -4.24 -27.64 16 13 C 0.04 1.61 8.47 127.69 1.08 2.69 16 14 C 0.20 10.49 3.62 85.56 0.31 10.80 16 15 C -0.60 -34.65 8.52 25.60 0.22 -34.43 16 16 H 0.05 3.04 7.10 -2.91 -0.02 3.02 16 17 C -0.04 -2.19 5.46 84.65 0.46 -1.73 16 18 N -0.94 -58.23 13.65 21.45 0.29 -57.93 16 19 Si 1.12 50.90 29.90 68.60 2.05 52.95 16 20 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 21 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 23 C -0.18 -5.82 4.70 30.69 0.14 -5.68 16 24 C 0.07 1.88 6.84 72.01 0.49 2.37 16 25 O -0.38 -10.13 9.71 -148.98 -1.45 -11.58 16 26 C -0.06 -1.40 9.35 22.25 0.21 -1.19 16 27 C -0.21 -4.21 9.04 22.37 0.20 -4.01 16 28 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.58 7.67 -2.39 -0.02 0.56 16 30 H 0.06 0.59 7.66 -2.39 -0.02 0.58 16 31 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 32 H 0.15 2.42 8.03 -2.91 -0.02 2.39 16 33 H 0.07 2.05 6.35 -2.39 -0.02 2.04 16 34 H 0.08 2.27 8.14 -2.38 -0.02 2.25 16 35 H 0.05 2.29 6.86 -2.38 -0.02 2.27 16 36 H 0.08 2.57 6.25 -2.38 -0.01 2.56 16 37 H 0.02 0.62 6.39 -2.39 -0.02 0.61 16 38 H 0.00 -0.27 7.80 -2.39 -0.02 -0.29 16 39 H -0.04 -2.07 7.02 -2.38 -0.02 -2.09 16 40 H 0.25 15.93 7.22 -92.71 -0.67 15.26 16 41 H 0.05 1.93 7.09 -2.38 -0.02 1.91 16 42 H 0.07 2.29 6.24 -2.39 -0.01 2.27 16 43 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.13 2.85 7.76 -2.91 -0.02 2.83 16 46 H 0.15 2.18 6.30 -2.91 -0.02 2.17 16 Total: -1.00 -68.99 359.02 1.80 -67.18 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 1.06 Total: 15.67 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: 5.05 Total: -31.38 kcal Atomic # 7 Polarization: -81.63 SS G_CDS: -3.95 Total: -85.57 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -2.42 Total: -18.85 kcal Atomic # 14 Polarization: 50.90 SS G_CDS: 2.05 Total: 52.95 kcal Total: -68.99 1.80 -67.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168628394.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.265 kcal (2) G-P(sol) polarization free energy of solvation -68.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds