Wall clock time and date at job start Tue Mar 31 2020 10:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 116.99855 * 2 1 4 4 C 1.38734 * 120.05559 * 180.02562 * 3 2 1 5 5 C 1.38136 * 119.94116 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05960 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94592 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.48301 * 25.02149 * 7 6 5 9 9 C 1.53094 * 109.47688 * 264.99984 * 7 6 5 10 10 C 1.53183 * 109.15859 * 182.40894 * 9 7 6 11 11 H 1.09002 * 109.54436 * 297.11028 * 10 9 7 12 12 N 1.46900 * 109.54110 * 176.84747 * 10 9 7 13 13 C 1.46900 * 111.00102 * 299.39654 * 12 10 9 14 14 C 1.46902 * 111.00184 * 175.44286 * 12 10 9 15 15 C 1.50695 * 109.47271 * 190.00048 * 14 12 10 16 16 H 1.07994 * 120.00154 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99747 * 179.97438 * 15 14 12 18 18 N 1.31510 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99725 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47206 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46588 * 120.00306 * 19 17 15 22 22 H 1.48497 * 109.47440 * 240.00100 * 19 17 15 23 23 C 1.53176 * 109.03838 * 56.98139 * 10 9 7 24 24 C 1.53093 * 109.16348 * 303.01796 * 23 10 9 25 25 O 1.42902 * 109.48140 * 145.04619 * 7 6 5 26 26 C 1.38269 * 120.10899 * 0.24986 * 6 5 4 27 27 C 1.38146 * 120.05282 * 359.45394 * 26 6 5 28 28 H 1.09001 * 109.47685 * 60.00147 * 1 2 3 29 29 H 1.09007 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47094 * 299.99380 * 1 2 3 31 31 H 1.07994 * 120.02691 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.97336 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.52488 * 62.50980 * 9 7 6 34 34 H 1.08995 * 109.52127 * 302.30966 * 9 7 6 35 35 H 1.08998 * 109.46882 * 60.00369 * 13 12 10 36 36 H 1.08994 * 109.47108 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.47110 * 300.00186 * 13 12 10 38 38 H 1.08998 * 109.46984 * 310.00461 * 14 12 10 39 39 H 1.09000 * 109.47081 * 69.99754 * 14 12 10 40 40 H 0.97008 * 119.99831 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.52469 * 183.11228 * 23 10 9 42 42 H 1.09001 * 109.52097 * 62.92137 * 23 10 9 43 43 H 1.09002 * 109.48198 * 177.59219 * 24 23 10 44 44 H 1.08999 * 109.48029 * 297.61833 * 24 23 10 45 45 H 1.07999 * 119.96838 * 179.70116 * 26 6 5 46 46 H 1.08005 * 120.02076 * 180.24774 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0559 2.5170 0.0000 6 6 3.3017 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 1 4.9803 4.9203 -0.4324 9 6 4.1061 5.5290 1.4411 10 6 4.7476 6.9200 1.4290 11 1 5.7578 6.8522 1.0253 12 7 4.7982 7.4497 2.7983 13 6 3.4488 7.5722 3.3656 14 6 5.5053 8.7367 2.8391 15 6 5.7534 9.1283 4.2730 16 1 5.4197 8.4853 5.0738 17 6 6.4075 10.3071 4.5624 18 7 6.8144 11.0899 3.5871 19 14 6.7144 10.7928 6.3398 20 1 6.1622 9.7494 7.2405 21 1 8.1754 10.9239 6.5718 22 1 6.0503 12.0912 6.6199 23 6 3.9061 7.8507 0.5504 24 6 3.7935 7.2506 -0.8535 25 8 3.2180 5.9454 -0.7677 26 6 1.9209 3.6048 0.0079 27 6 1.2914 2.3751 0.0012 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.0208 0.3801 -0.0005 32 1 5.1344 2.5752 -0.0008 33 1 4.7285 4.8460 2.0192 34 1 3.1149 5.5889 1.8904 35 1 2.9735 6.5916 3.3876 36 1 3.5153 7.9669 4.3794 37 1 2.8562 8.2495 2.7506 38 1 6.4580 8.6445 2.3175 39 1 4.8979 9.5005 2.3537 40 1 7.2749 11.9190 3.7907 41 1 4.3853 8.8279 0.4914 42 1 2.9108 7.9574 0.9818 43 1 3.1601 7.8873 -1.4713 44 1 4.7854 7.1818 -1.3000 45 1 1.3340 4.5114 0.0140 46 1 0.2128 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168628397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:14 Heat of formation + Delta-G solvation = -53.660475 kcal Electronic energy + Delta-G solvation = -25148.045517 eV Core-core repulsion = 21617.025045 eV Total energy + Delta-G solvation = -3531.020472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.44825 -39.53678 -37.58393 -36.40510 -32.87490 -32.29631 -31.23885 -30.93772 -29.15413 -27.51513 -27.05572 -25.59329 -23.94319 -23.24003 -22.61754 -21.58495 -20.58738 -19.02074 -18.33437 -16.64801 -16.59005 -16.10810 -15.96056 -15.70216 -15.09341 -15.01221 -14.60390 -14.32908 -14.01585 -13.85086 -13.67883 -13.57823 -13.24738 -12.96348 -12.65776 -12.52062 -12.19479 -12.02543 -11.75752 -11.46692 -11.23976 -11.06619 -10.94688 -10.90102 -10.83460 -10.67321 -10.46411 -10.37353 -10.13094 -9.74743 -9.40297 -9.18830 -9.09803 -8.44401 -8.19612 -7.18940 -6.03892 -4.04726 1.22455 1.30263 3.05651 3.30048 3.37559 3.42587 3.57440 3.88440 4.41172 4.64266 4.72776 4.74018 4.86484 4.88251 4.97307 5.11164 5.16920 5.20566 5.23621 5.29926 5.32332 5.34668 5.44604 5.55314 5.59710 5.67264 5.81138 5.93556 5.98979 6.07996 6.13096 6.21150 6.23701 6.29826 6.33594 6.46068 6.55455 6.61670 6.67040 6.79783 7.20081 7.28602 7.32990 7.37624 7.79937 8.08008 8.20056 8.55249 9.03370 9.59487 11.06957 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002768 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.358291 B =10114.243086 C =10622.439763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.122 3.878 4 C -0.152 4.152 5 C -0.070 4.070 6 C -0.109 4.109 7 C 0.137 3.863 8 H 0.065 0.935 9 C -0.134 4.134 10 C 0.085 3.915 11 H 0.075 0.925 12 N -0.532 5.532 13 C 0.032 3.968 14 C 0.192 3.808 15 C -0.506 4.506 16 H 0.063 0.937 17 C 0.054 3.946 18 N -0.899 5.899 19 Si 0.897 3.103 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.285 1.285 23 C -0.191 4.191 24 C 0.069 3.931 25 O -0.380 6.380 26 C -0.052 4.052 27 C -0.210 4.210 28 H 0.055 0.945 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.130 0.870 32 H 0.131 0.869 33 H 0.078 0.922 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.072 0.928 37 H 0.015 0.985 38 H 0.028 0.972 39 H -0.006 1.006 40 H 0.260 0.740 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.090 0.910 44 H 0.049 0.951 45 H 0.130 0.870 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.017 -17.848 -10.286 23.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.077 3.923 4 C -0.171 4.171 5 C -0.088 4.088 6 C -0.109 4.109 7 C 0.079 3.921 8 H 0.083 0.917 9 C -0.172 4.172 10 C -0.025 4.025 11 H 0.093 0.907 12 N -0.255 5.255 13 C -0.116 4.116 14 C 0.067 3.933 15 C -0.545 4.545 16 H 0.081 0.919 17 C -0.147 4.147 18 N -0.539 5.539 19 Si 0.725 3.275 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 C -0.230 4.230 24 C -0.009 4.009 25 O -0.300 6.300 26 C -0.070 4.070 27 C -0.229 4.229 28 H 0.073 0.927 29 H 0.116 0.884 30 H 0.074 0.926 31 H 0.148 0.852 32 H 0.149 0.851 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.091 0.909 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.012 0.988 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.108 0.892 44 H 0.067 0.933 45 H 0.148 0.852 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.743 -18.248 -10.083 23.454 hybrid contribution -0.243 1.338 0.564 1.472 sum -10.986 -16.910 -9.519 22.299 Atomic orbital electron populations 1.23038 0.78505 1.03771 1.01433 1.86051 1.21318 1.27149 1.88872 1.19053 0.92414 0.84047 0.96802 1.20331 0.91301 0.98435 1.07032 1.20773 0.99948 0.90715 0.97409 1.19551 0.93905 0.93635 1.03851 1.20789 0.93442 0.86072 0.91842 0.91715 1.22287 1.02315 0.97263 0.95336 1.21708 0.97940 0.92727 0.90087 0.90703 1.62320 1.16253 1.31184 1.15740 1.22289 0.89941 0.98696 1.00719 1.19728 0.92938 0.83055 0.97547 1.21215 1.36490 1.04610 0.92151 0.91858 1.24990 0.95831 0.96439 0.97426 1.69965 1.39861 1.12743 1.31304 0.86454 0.77894 0.78282 0.84873 1.19670 1.21016 1.21143 1.22919 1.02366 1.01306 0.96453 1.22518 0.98312 0.83328 0.96693 1.87859 1.49392 1.20817 1.71905 1.20810 0.94101 0.97071 0.95059 1.21234 0.99949 0.92316 1.09408 0.92676 0.88375 0.92614 0.85174 0.85099 0.90331 0.90924 0.93479 0.90897 0.96645 0.95435 0.98837 0.93016 0.90253 0.90963 0.89217 0.93280 0.85188 0.85588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.81 101.05 0.99 1.17 16 2 O -0.32 -3.35 10.50 -19.44 -0.20 -3.56 16 3 C 0.12 1.38 6.69 -39.22 -0.26 1.12 16 4 C -0.15 -1.68 9.99 -39.44 -0.39 -2.07 16 5 C -0.07 -0.78 9.67 -39.61 -0.38 -1.17 16 6 C -0.11 -1.36 5.01 -104.60 -0.52 -1.88 16 7 C 0.14 1.81 2.85 -27.83 -0.08 1.73 16 8 H 0.06 0.81 8.05 -51.93 -0.42 0.39 16 9 C -0.13 -2.00 4.55 -26.59 -0.12 -2.12 16 10 C 0.09 1.49 2.32 -67.53 -0.16 1.33 16 11 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 12 N -0.53 -11.34 4.75 -236.11 -1.12 -12.46 16 13 C 0.03 0.62 8.64 60.06 0.52 1.14 16 14 C 0.19 4.94 4.16 -4.98 -0.02 4.92 16 15 C -0.51 -14.17 8.46 -34.44 -0.29 -14.46 16 16 H 0.06 1.77 7.12 -52.49 -0.37 1.39 16 17 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 18 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 19 Si 0.90 21.64 29.54 -169.99 -5.02 16.62 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 C -0.19 -3.10 4.73 -26.59 -0.13 -3.23 16 24 C 0.07 0.93 6.84 37.21 0.25 1.18 16 25 O -0.38 -5.39 9.56 -35.23 -0.34 -5.73 16 26 C -0.05 -0.63 9.34 -39.60 -0.37 -1.00 16 27 C -0.21 -2.29 9.04 -39.44 -0.36 -2.65 16 28 H 0.05 0.32 7.66 -51.93 -0.40 -0.08 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 32 H 0.13 1.21 8.06 -52.48 -0.42 0.79 16 33 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.07 1.12 6.27 -51.93 -0.33 0.79 16 35 H 0.05 0.80 6.26 -51.93 -0.32 0.48 16 36 H 0.07 1.54 6.76 -51.93 -0.35 1.18 16 37 H 0.02 0.29 6.22 -51.93 -0.32 -0.03 16 38 H 0.03 0.76 8.01 -51.93 -0.42 0.34 16 39 H -0.01 -0.17 7.02 -51.93 -0.36 -0.53 16 40 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 41 H 0.08 1.43 6.93 -51.93 -0.36 1.07 16 42 H 0.07 1.21 6.24 -51.93 -0.32 0.88 16 43 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.13 1.56 7.63 -52.49 -0.40 1.16 16 46 H 0.13 1.09 6.30 -52.48 -0.33 0.76 16 LS Contribution 359.67 15.07 5.42 5.42 Total: -1.00 -31.00 359.67 -9.14 -40.14 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -7.20 Total: -0.06 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.42 Total: -14.55 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: -0.38 Total: -38.30 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: -0.54 Total: -9.28 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.00 -9.14 -40.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168628397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.517 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds