Wall clock time and date at job start Tue Mar 31 2020 10:22:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35905 * 116.99855 * 2 1 4 4 C 1.38734 * 120.05559 * 180.02562 * 3 2 1 5 5 C 1.38136 * 119.94116 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.05960 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94592 * 179.97438 * 6 5 4 8 8 H 1.08994 * 109.48301 * 25.02149 * 7 6 5 9 9 C 1.53094 * 109.47688 * 264.99984 * 7 6 5 10 10 C 1.53183 * 109.15859 * 182.40894 * 9 7 6 11 11 H 1.09002 * 109.54436 * 297.11028 * 10 9 7 12 12 N 1.46900 * 109.54110 * 176.84747 * 10 9 7 13 13 C 1.46900 * 111.00102 * 299.39654 * 12 10 9 14 14 C 1.46902 * 111.00184 * 175.44286 * 12 10 9 15 15 C 1.50695 * 109.47271 * 190.00048 * 14 12 10 16 16 H 1.07994 * 120.00154 * 0.02562 * 15 14 12 17 17 C 1.37884 * 119.99747 * 179.97438 * 15 14 12 18 18 N 1.31510 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99725 * 179.97438 * 17 15 14 20 20 H 1.48496 * 109.47206 * 0.02562 * 19 17 15 21 21 H 1.48507 * 109.46588 * 120.00306 * 19 17 15 22 22 H 1.48497 * 109.47440 * 240.00100 * 19 17 15 23 23 C 1.53176 * 109.03838 * 56.98139 * 10 9 7 24 24 C 1.53093 * 109.16348 * 303.01796 * 23 10 9 25 25 O 1.42902 * 109.48140 * 145.04619 * 7 6 5 26 26 C 1.38269 * 120.10899 * 0.24986 * 6 5 4 27 27 C 1.38146 * 120.05282 * 359.45394 * 26 6 5 28 28 H 1.09001 * 109.47685 * 60.00147 * 1 2 3 29 29 H 1.09007 * 109.47144 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47094 * 299.99380 * 1 2 3 31 31 H 1.07994 * 120.02691 * 359.97438 * 4 3 2 32 32 H 1.08006 * 119.97336 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.52488 * 62.50980 * 9 7 6 34 34 H 1.08995 * 109.52127 * 302.30966 * 9 7 6 35 35 H 1.08998 * 109.46882 * 60.00369 * 13 12 10 36 36 H 1.08994 * 109.47108 * 180.02562 * 13 12 10 37 37 H 1.08996 * 109.47110 * 300.00186 * 13 12 10 38 38 H 1.08998 * 109.46984 * 310.00461 * 14 12 10 39 39 H 1.09000 * 109.47081 * 69.99754 * 14 12 10 40 40 H 0.97008 * 119.99831 * 180.02562 * 18 17 15 41 41 H 1.09004 * 109.52469 * 183.11228 * 23 10 9 42 42 H 1.09001 * 109.52097 * 62.92137 * 23 10 9 43 43 H 1.09002 * 109.48198 * 177.59219 * 24 23 10 44 44 H 1.08999 * 109.48029 * 297.61833 * 24 23 10 45 45 H 1.07999 * 119.96838 * 179.70116 * 26 6 5 46 46 H 1.08005 * 120.02076 * 180.24774 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 3.4313 1.2849 -0.0005 5 6 4.0559 2.5170 0.0000 6 6 3.3017 3.6758 0.0016 7 6 3.9859 5.0186 0.0028 8 1 4.9803 4.9203 -0.4324 9 6 4.1061 5.5290 1.4411 10 6 4.7476 6.9200 1.4290 11 1 5.7578 6.8522 1.0253 12 7 4.7982 7.4497 2.7983 13 6 3.4488 7.5722 3.3656 14 6 5.5053 8.7367 2.8391 15 6 5.7534 9.1283 4.2730 16 1 5.4197 8.4853 5.0738 17 6 6.4075 10.3071 4.5624 18 7 6.8144 11.0899 3.5871 19 14 6.7144 10.7928 6.3398 20 1 6.1622 9.7494 7.2405 21 1 8.1754 10.9239 6.5718 22 1 6.0503 12.0912 6.6199 23 6 3.9061 7.8507 0.5504 24 6 3.7935 7.2506 -0.8535 25 8 3.2180 5.9454 -0.7677 26 6 1.9209 3.6048 0.0079 27 6 1.2914 2.3751 0.0012 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8900 31 1 4.0208 0.3801 -0.0005 32 1 5.1344 2.5752 -0.0008 33 1 4.7285 4.8460 2.0192 34 1 3.1149 5.5889 1.8904 35 1 2.9735 6.5916 3.3876 36 1 3.5153 7.9669 4.3794 37 1 2.8562 8.2495 2.7506 38 1 6.4580 8.6445 2.3175 39 1 4.8979 9.5005 2.3537 40 1 7.2749 11.9190 3.7907 41 1 4.3853 8.8279 0.4914 42 1 2.9108 7.9574 0.9818 43 1 3.1601 7.8873 -1.4713 44 1 4.7854 7.1818 -1.3000 45 1 1.3340 4.5114 0.0140 46 1 0.2128 2.3202 0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001168628397.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:13 Heat of formation + Delta-G solvation = -72.869000 kcal Electronic energy + Delta-G solvation = -25148.878461 eV Core-core repulsion = 21617.025045 eV Total energy + Delta-G solvation = -3531.853417 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38500 -40.61180 -38.60480 -37.74308 -34.89420 -33.35385 -32.55936 -31.98988 -30.15562 -29.07584 -28.07504 -27.21708 -25.25256 -24.48785 -23.65463 -22.95120 -21.72165 -20.45427 -19.09874 -18.57065 -17.54298 -17.41439 -16.89533 -16.67167 -16.60556 -16.14570 -15.99334 -15.62290 -15.28777 -15.21432 -14.84209 -14.53391 -14.44627 -14.24266 -14.00864 -13.79102 -13.49539 -13.19384 -12.91241 -12.78942 -12.71429 -12.67084 -12.44191 -12.18081 -12.13024 -11.99844 -11.83022 -11.81900 -11.66323 -11.29830 -11.12964 -10.65051 -10.54157 -9.93362 -9.06205 -8.93557 -8.20887 -6.30506 0.38402 0.43665 1.39821 1.40652 1.54095 2.39456 2.39733 2.64824 2.88398 3.11390 3.29661 3.76255 3.81404 3.89448 3.97532 4.04668 4.09308 4.21136 4.23298 4.34348 4.40943 4.45100 4.48276 4.53243 4.58368 4.66703 4.69758 4.74748 4.75586 4.76964 4.89197 4.98683 5.04529 5.11897 5.14742 5.21326 5.29442 5.32509 5.37200 5.41859 5.64564 5.65638 5.80156 6.05700 6.26085 6.33942 6.45770 6.64979 6.86151 7.39053 8.89958 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.025121 B = 0.002768 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.358291 B =10114.243086 C =10622.439763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.115 3.885 4 C -0.161 4.161 5 C -0.071 4.071 6 C -0.125 4.125 7 C 0.142 3.858 8 H 0.074 0.926 9 C -0.121 4.121 10 C 0.082 3.918 11 H 0.067 0.933 12 N -0.542 5.542 13 C 0.038 3.962 14 C 0.211 3.789 15 C -0.524 4.524 16 H 0.061 0.939 17 C 0.001 3.999 18 N -0.933 5.933 19 Si 0.968 3.032 20 H -0.264 1.264 21 H -0.278 1.278 22 H -0.278 1.278 23 C -0.183 4.183 24 C 0.075 3.925 25 O -0.384 6.384 26 C -0.063 4.063 27 C -0.212 4.212 28 H 0.063 0.937 29 H 0.119 0.881 30 H 0.062 0.938 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.054 0.946 37 H 0.016 0.984 38 H 0.000 1.000 39 H -0.031 1.031 40 H 0.264 0.736 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.109 0.891 44 H 0.059 0.941 45 H 0.128 0.872 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.911 -19.420 -10.156 24.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.070 3.930 4 C -0.179 4.179 5 C -0.089 4.089 6 C -0.126 4.126 7 C 0.084 3.916 8 H 0.092 0.908 9 C -0.159 4.159 10 C -0.027 4.027 11 H 0.085 0.915 12 N -0.265 5.265 13 C -0.110 4.110 14 C 0.085 3.915 15 C -0.562 4.562 16 H 0.079 0.921 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.793 3.207 20 H -0.189 1.189 21 H -0.204 1.204 22 H -0.204 1.204 23 C -0.223 4.223 24 C -0.003 4.003 25 O -0.303 6.303 26 C -0.081 4.081 27 C -0.231 4.231 28 H 0.082 0.918 29 H 0.138 0.862 30 H 0.080 0.920 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.098 0.902 34 H 0.087 0.913 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.018 0.982 39 H -0.013 1.013 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.086 0.914 43 H 0.127 0.873 44 H 0.077 0.923 45 H 0.145 0.855 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -11.657 -19.844 -9.962 25.079 hybrid contribution -0.021 1.740 0.479 1.805 sum -11.678 -18.105 -9.483 23.539 Atomic orbital electron populations 1.23328 0.76606 1.05536 1.02150 1.86039 1.23351 1.26770 1.88669 1.19254 0.92799 0.84547 0.96374 1.20587 0.91641 0.98950 1.06753 1.20970 1.00834 0.90357 0.96755 1.19544 0.94225 0.93372 1.05409 1.20764 0.94091 0.86352 0.90400 0.90796 1.22169 1.01582 0.95251 0.96905 1.21796 0.98253 0.94438 0.88256 0.91510 1.62221 1.17169 1.28535 1.18540 1.22246 0.89143 1.00217 0.99420 1.19329 0.91708 0.84529 0.95976 1.21522 1.36659 1.04943 0.93070 0.92114 1.25894 0.95419 0.96352 1.02003 1.70085 1.40467 1.13222 1.33611 0.85355 0.77914 0.78101 0.79371 1.18856 1.20390 1.20409 1.22799 1.01276 0.99946 0.98237 1.22523 0.99469 0.83362 0.94898 1.87872 1.49764 1.20847 1.71847 1.20887 0.94127 0.97524 0.95566 1.21418 1.01037 0.91749 1.08848 0.91818 0.86235 0.91978 0.83798 0.83458 0.90244 0.91256 0.90658 0.92737 0.96587 0.98216 1.01293 0.92723 0.92694 0.91450 0.87266 0.92308 0.85453 0.83661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -6.36 10.50 -92.48 -0.97 -7.33 16 3 C 0.12 2.41 6.69 22.50 0.15 2.56 16 4 C -0.16 -3.26 9.99 22.36 0.22 -3.03 16 5 C -0.07 -1.47 9.67 22.25 0.22 -1.25 16 6 C -0.13 -2.93 5.01 -19.85 -0.10 -3.03 16 7 C 0.14 3.57 2.85 29.88 0.09 3.66 16 8 H 0.07 1.73 8.05 -2.39 -0.02 1.71 16 9 C -0.12 -3.50 4.55 30.69 0.14 -3.36 16 10 C 0.08 2.88 2.32 45.04 0.10 2.98 16 11 H 0.07 2.45 8.04 -2.39 -0.02 2.43 16 12 N -0.54 -23.52 4.75 -900.92 -4.28 -27.80 16 13 C 0.04 1.48 8.64 127.69 1.10 2.59 16 14 C 0.21 11.24 4.16 85.56 0.36 11.60 16 15 C -0.52 -29.93 8.46 25.60 0.22 -29.71 16 16 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 17 C 0.00 0.07 5.46 84.66 0.46 0.53 16 18 N -0.93 -56.23 13.29 21.45 0.28 -55.94 16 19 Si 0.97 44.57 29.54 68.60 2.03 46.60 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 23 C -0.18 -6.01 4.73 30.68 0.15 -5.86 16 24 C 0.07 1.94 6.84 72.01 0.49 2.43 16 25 O -0.38 -10.30 9.56 -148.98 -1.42 -11.72 16 26 C -0.06 -1.43 9.34 22.26 0.21 -1.23 16 27 C -0.21 -4.24 9.04 22.36 0.20 -4.04 16 28 H 0.06 0.59 7.66 -2.39 -0.02 0.57 16 29 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.06 0.60 7.66 -2.39 -0.02 0.58 16 31 H 0.14 2.42 8.06 -2.91 -0.02 2.39 16 32 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 33 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.05 6.27 -2.39 -0.01 2.03 16 35 H 0.07 2.50 6.26 -2.39 -0.01 2.49 16 36 H 0.05 2.31 6.76 -2.39 -0.02 2.30 16 37 H 0.02 0.61 6.22 -2.39 -0.01 0.60 16 38 H 0.00 -0.02 8.01 -2.39 -0.02 -0.03 16 39 H -0.03 -1.75 7.02 -2.39 -0.02 -1.77 16 40 H 0.26 14.91 8.31 -92.70 -0.77 14.14 16 41 H 0.05 2.06 6.93 -2.39 -0.02 2.04 16 42 H 0.07 2.25 6.24 -2.39 -0.01 2.24 16 43 H 0.11 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.13 2.90 7.63 -2.91 -0.02 2.88 16 46 H 0.15 2.20 6.30 -2.91 -0.02 2.19 16 Total: -1.00 -66.91 359.67 1.72 -65.19 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.96 Total: 14.85 kcal Atomic # 6 Polarization: -28.97 SS G_CDS: 5.12 Total: -23.85 kcal Atomic # 7 Polarization: -79.75 SS G_CDS: -3.99 Total: -83.74 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -2.39 Total: -19.05 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -66.91 1.72 -65.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168628397.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.681 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds