Wall clock time and date at job start Tue Mar 31 2020 10:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47182 * 2 1 4 4 C 1.34227 * 116.99838 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00351 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99618 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.46945 * 300.00079 * 6 4 3 8 8 N 1.46905 * 109.46876 * 180.02562 * 6 4 3 9 9 C 1.46901 * 110.99870 * 85.00155 * 8 6 4 10 10 H 1.09000 * 109.46917 * 324.99892 * 9 8 6 11 11 C 1.52993 * 109.47269 * 84.99904 * 9 8 6 12 12 C 1.53001 * 109.47087 * 205.00123 * 9 8 6 13 13 C 1.53002 * 109.47188 * 64.99539 * 12 9 8 14 14 C 1.50703 * 109.46901 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99828 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99414 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00656 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99509 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47123 * 60.00408 * 18 16 14 20 20 H 1.48503 * 109.46971 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47173 * 300.00057 * 18 16 14 22 22 C 1.50702 * 109.47188 * 60.00222 * 6 4 3 23 23 C 1.38238 * 119.99746 * 79.72835 * 22 6 4 24 24 C 1.38234 * 119.99679 * 179.80922 * 23 22 6 25 25 C 1.38234 * 119.99830 * 0.39616 * 24 23 22 26 26 C 1.38233 * 120.00399 * 359.85254 * 25 24 23 27 27 C 1.38230 * 119.99859 * 359.96032 * 26 25 24 28 28 H 1.08997 * 109.47479 * 300.00134 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00297 * 1 2 3 30 30 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46997 * 239.99671 * 2 1 3 32 32 H 1.08998 * 109.46755 * 120.00038 * 2 1 3 33 33 H 1.00901 * 110.99869 * 321.04866 * 8 6 4 34 34 H 1.09000 * 109.47161 * 60.00137 * 11 9 8 35 35 H 1.09006 * 109.47343 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47587 * 300.00069 * 11 9 8 37 37 H 1.08994 * 109.47082 * 184.99888 * 12 9 8 38 38 H 1.08999 * 109.46730 * 304.99823 * 12 9 8 39 39 H 1.08994 * 109.47395 * 300.00158 * 13 12 9 40 40 H 1.08999 * 109.47053 * 60.00482 * 13 12 9 41 41 H 0.96996 * 120.00523 * 179.97438 * 17 16 14 42 42 H 1.07997 * 119.99876 * 359.97438 * 23 22 6 43 43 H 1.07997 * 119.99819 * 180.22306 * 24 23 22 44 44 H 1.08007 * 119.99680 * 179.83254 * 25 24 23 45 45 H 1.08001 * 120.00201 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00329 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5850 3.4698 -0.8888 8 7 5.3877 2.8605 0.0010 9 6 5.9071 2.7142 -1.3653 10 1 5.2186 2.1067 -1.9526 11 6 6.0449 4.0953 -2.0091 12 6 7.2766 2.0336 -1.3202 13 6 7.1197 0.6063 -0.7918 14 6 8.4687 -0.0639 -0.7468 15 1 9.3499 0.4746 -1.0630 16 6 8.5779 -1.3643 -0.3019 17 7 7.5049 -2.0197 0.0836 18 14 10.2502 -2.1948 -0.2454 19 1 11.1520 -1.4311 0.6539 20 1 10.0978 -3.5801 0.2673 21 1 10.8302 -2.2332 -1.6119 22 6 3.4558 3.6727 1.2317 23 6 4.0754 3.4475 2.4468 24 6 3.6515 4.1249 3.5747 25 6 2.6028 5.0215 3.4892 26 6 1.9800 5.2429 2.2752 27 6 2.4063 4.5684 1.1465 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.7105 2.1097 0.5929 34 1 6.7334 4.7028 -1.4218 35 1 6.4299 3.9867 -3.0231 36 1 5.0693 4.5802 -2.0413 37 1 7.7013 2.0049 -2.3236 38 1 7.9394 2.5942 -0.6610 39 1 6.6950 0.6350 0.2116 40 1 6.4569 0.0457 -1.4510 41 1 7.5816 -2.9347 0.3962 42 1 4.8922 2.7442 2.5142 43 1 4.1379 3.9516 4.5233 44 1 2.2699 5.5488 4.3711 45 1 1.1604 5.9431 2.2085 46 1 1.9194 4.7410 0.1980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:27 Heat of formation + Delta-G solvation = -74.643157 kcal Electronic energy + Delta-G solvation = -25719.106388 eV Core-core repulsion = 22187.176038 eV Total energy + Delta-G solvation = -3531.930350 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60322 -39.00826 -37.37815 -35.98060 -33.68898 -32.50181 -31.55008 -30.87985 -29.95140 -28.95626 -26.34284 -24.89051 -23.25526 -22.56964 -21.87915 -21.40091 -20.19644 -19.56722 -17.67481 -17.06716 -16.56167 -16.29102 -16.00608 -15.45208 -15.21875 -14.59281 -14.43258 -14.10135 -13.91994 -13.39399 -13.32673 -12.95664 -12.84043 -12.70418 -12.47301 -12.29582 -12.21607 -11.80791 -11.74969 -11.51969 -11.45539 -11.16388 -11.11760 -10.92089 -10.84278 -10.46499 -10.38160 -10.35790 -10.26033 -9.67930 -9.18303 -8.93972 -8.86286 -8.69618 -8.34334 -8.20926 -5.87838 -3.91421 1.32640 1.46648 2.47909 2.85464 3.38159 3.42257 3.44840 3.80975 4.37930 4.53155 4.72866 4.85804 4.91852 4.97276 5.02300 5.07869 5.16091 5.22805 5.33757 5.45606 5.48911 5.53952 5.65295 5.67934 5.73010 5.77490 5.86856 5.91676 5.96187 6.07954 6.12862 6.32340 6.44946 6.49407 6.50885 6.55369 6.65112 6.66178 6.92065 7.01625 7.16024 7.29243 7.63196 7.82827 7.96789 8.02855 8.14715 8.53511 9.16561 9.71548 11.21888 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.004208 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.744367 B = 6651.856839 C = 7388.861369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.361 6.361 4 C 0.420 3.580 5 O -0.466 6.466 6 C 0.139 3.861 7 H 0.117 0.883 8 N -0.651 5.651 9 C 0.080 3.920 10 H 0.041 0.959 11 C -0.138 4.138 12 C -0.114 4.114 13 C 0.028 3.972 14 C -0.523 4.523 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.888 5.888 18 Si 0.887 3.113 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.278 1.278 22 C -0.065 4.065 23 C -0.091 4.091 24 C -0.121 4.121 25 C -0.121 4.121 26 C -0.125 4.125 27 C -0.101 4.101 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.366 0.634 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.020 0.980 40 H 0.014 0.986 41 H 0.258 0.742 42 H 0.125 0.875 43 H 0.121 0.879 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.510 13.011 2.517 20.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.015 4.015 3 O -0.277 6.277 4 C 0.258 3.742 5 O -0.350 6.350 6 C 0.026 3.974 7 H 0.134 0.866 8 N -0.288 5.288 9 C -0.030 4.030 10 H 0.059 0.941 11 C -0.196 4.196 12 C -0.152 4.152 13 C -0.010 4.010 14 C -0.561 4.561 15 H 0.071 0.929 16 C -0.143 4.143 17 N -0.527 5.527 18 Si 0.715 3.285 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.204 1.204 22 C -0.065 4.065 23 C -0.109 4.109 24 C -0.140 4.140 25 C -0.139 4.139 26 C -0.143 4.143 27 C -0.119 4.119 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.191 0.809 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.032 0.968 41 H 0.068 0.932 42 H 0.143 0.857 43 H 0.140 0.860 44 H 0.136 0.864 45 H 0.138 0.862 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -15.240 13.151 2.600 20.297 hybrid contribution 0.708 -1.763 -0.139 1.905 sum -14.532 11.388 2.460 18.626 Atomic orbital electron populations 1.21775 0.92988 1.02686 1.03137 1.22982 0.94934 0.80761 1.02850 1.86502 1.24962 1.31958 1.84318 1.25119 0.81059 0.94173 0.73808 1.90932 1.59626 1.41884 1.42512 1.20331 0.90175 0.88467 0.98451 0.86579 1.61104 1.02470 1.52530 1.12669 1.21709 0.98088 0.95461 0.87696 0.94122 1.21835 1.01026 0.96900 0.99814 1.21845 0.93148 0.99164 1.01072 1.19058 0.96560 0.88961 0.96382 1.21225 0.93758 0.97829 1.43302 0.92940 1.25015 0.96181 0.97511 0.95589 1.70005 1.27872 1.11043 1.43763 0.86742 0.84892 0.78528 0.78293 1.20306 1.21411 1.20372 1.19343 0.96273 0.97480 0.93442 1.21059 0.98881 0.99067 0.91883 1.21131 0.97340 0.97030 0.98452 1.21132 0.96592 0.98528 0.97643 1.21032 1.00252 1.00197 0.92782 1.20940 0.96101 0.96078 0.98826 0.91694 0.91722 0.90488 0.91264 0.91270 0.80867 0.92054 0.92702 0.93747 0.92644 0.92468 0.96162 0.96783 0.93208 0.85691 0.86050 0.86364 0.86186 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 10.29 37.16 0.38 -1.05 16 2 C 0.06 0.80 6.19 37.16 0.23 1.03 16 3 O -0.36 -5.47 10.14 -39.25 -0.40 -5.87 16 4 C 0.42 7.26 6.93 36.01 0.25 7.50 16 5 O -0.47 -10.11 14.66 -18.74 -0.27 -10.38 16 6 C 0.14 2.08 2.52 -70.01 -0.18 1.90 16 7 H 0.12 1.53 6.97 -51.93 -0.36 1.17 16 8 N -0.65 -11.13 5.37 -102.17 -0.55 -11.67 16 9 C 0.08 1.41 2.29 -67.72 -0.15 1.25 16 10 H 0.04 0.77 7.64 -51.93 -0.40 0.37 16 11 C -0.14 -1.97 9.40 37.15 0.35 -1.62 16 12 C -0.11 -2.43 4.74 -26.73 -0.13 -2.55 16 13 C 0.03 0.73 4.45 -27.88 -0.12 0.61 16 14 C -0.52 -15.28 9.11 -34.44 -0.31 -15.59 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -27.68 13.29 55.43 0.74 -26.94 16 18 Si 0.89 22.29 29.54 -169.99 -5.02 17.27 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 22 C -0.06 -0.88 4.88 -104.62 -0.51 -1.39 16 23 C -0.09 -1.27 9.32 -39.58 -0.37 -1.64 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 26 C -0.12 -1.28 10.05 -39.59 -0.40 -1.68 16 27 C -0.10 -1.16 9.67 -39.58 -0.38 -1.55 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 32 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 33 H 0.37 7.26 4.84 -39.29 -0.19 7.07 16 34 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.04 0.56 7.43 -51.93 -0.39 0.17 16 37 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.02 0.57 6.05 -51.93 -0.31 0.26 16 40 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.13 1.89 7.26 -52.49 -0.38 1.51 16 43 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 44 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 45 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 46 H 0.12 1.17 8.04 -52.49 -0.42 0.75 16 LS Contribution 379.55 15.07 5.72 5.72 Total: -1.00 -33.23 379.55 -9.51 -42.74 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -7.49 Total: 5.78 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: -2.24 Total: -16.64 kcal Atomic # 7 Polarization: -38.81 SS G_CDS: 0.19 Total: -38.62 kcal Atomic # 8 Polarization: -15.57 SS G_CDS: -0.67 Total: -16.25 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -33.23 -9.51 -42.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.906 kcal (2) G-P(sol) polarization free energy of solvation -33.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds