Wall clock time and date at job start Tue Mar 31 2020 10:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.47182 * 2 1 4 4 C 1.34227 * 116.99838 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00351 * 0.02562 * 4 3 2 6 6 C 1.50702 * 119.99618 * 180.02562 * 4 3 2 7 7 H 1.09003 * 109.46945 * 300.00079 * 6 4 3 8 8 N 1.46905 * 109.46876 * 180.02562 * 6 4 3 9 9 C 1.46901 * 110.99870 * 85.00155 * 8 6 4 10 10 H 1.09000 * 109.46917 * 324.99892 * 9 8 6 11 11 C 1.52993 * 109.47269 * 84.99904 * 9 8 6 12 12 C 1.53001 * 109.47087 * 205.00123 * 9 8 6 13 13 C 1.53002 * 109.47188 * 64.99539 * 12 9 8 14 14 C 1.50703 * 109.46901 * 180.02562 * 13 12 9 15 15 H 1.08001 * 119.99828 * 0.02562 * 14 13 12 16 16 C 1.37876 * 119.99414 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00656 * 359.97438 * 16 14 13 18 18 Si 1.86805 * 119.99509 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.47123 * 60.00408 * 18 16 14 20 20 H 1.48503 * 109.46971 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47173 * 300.00057 * 18 16 14 22 22 C 1.50702 * 109.47188 * 60.00222 * 6 4 3 23 23 C 1.38238 * 119.99746 * 79.72835 * 22 6 4 24 24 C 1.38234 * 119.99679 * 179.80922 * 23 22 6 25 25 C 1.38234 * 119.99830 * 0.39616 * 24 23 22 26 26 C 1.38233 * 120.00399 * 359.85254 * 25 24 23 27 27 C 1.38230 * 119.99859 * 359.96032 * 26 25 24 28 28 H 1.08997 * 109.47479 * 300.00134 * 1 2 3 29 29 H 1.09000 * 109.47160 * 60.00297 * 1 2 3 30 30 H 1.09001 * 109.47133 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46997 * 239.99671 * 2 1 3 32 32 H 1.08998 * 109.46755 * 120.00038 * 2 1 3 33 33 H 1.00901 * 110.99869 * 321.04866 * 8 6 4 34 34 H 1.09000 * 109.47161 * 60.00137 * 11 9 8 35 35 H 1.09006 * 109.47343 * 180.02562 * 11 9 8 36 36 H 1.09004 * 109.47587 * 300.00069 * 11 9 8 37 37 H 1.08994 * 109.47082 * 184.99888 * 12 9 8 38 38 H 1.08999 * 109.46730 * 304.99823 * 12 9 8 39 39 H 1.08994 * 109.47395 * 300.00158 * 13 12 9 40 40 H 1.08999 * 109.47053 * 60.00482 * 13 12 9 41 41 H 0.96996 * 120.00523 * 179.97438 * 17 16 14 42 42 H 1.07997 * 119.99876 * 359.97438 * 23 22 6 43 43 H 1.07997 * 119.99819 * 180.22306 * 24 23 22 44 44 H 1.08007 * 119.99680 * 179.83254 * 25 24 23 45 45 H 1.08001 * 120.00201 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00329 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9207 2.9374 0.0012 7 1 3.5850 3.4698 -0.8888 8 7 5.3877 2.8605 0.0010 9 6 5.9071 2.7142 -1.3653 10 1 5.2186 2.1067 -1.9526 11 6 6.0449 4.0953 -2.0091 12 6 7.2766 2.0336 -1.3202 13 6 7.1197 0.6063 -0.7918 14 6 8.4687 -0.0639 -0.7468 15 1 9.3499 0.4746 -1.0630 16 6 8.5779 -1.3643 -0.3019 17 7 7.5049 -2.0197 0.0836 18 14 10.2502 -2.1948 -0.2454 19 1 11.1520 -1.4311 0.6539 20 1 10.0978 -3.5801 0.2673 21 1 10.8302 -2.2332 -1.6119 22 6 3.4558 3.6727 1.2317 23 6 4.0754 3.4475 2.4468 24 6 3.6515 4.1249 3.5747 25 6 2.6028 5.0215 3.4892 26 6 1.9800 5.2429 2.2752 27 6 2.4063 4.5684 1.1465 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.7105 2.1097 0.5929 34 1 6.7334 4.7028 -1.4218 35 1 6.4299 3.9867 -3.0231 36 1 5.0693 4.5802 -2.0413 37 1 7.7013 2.0049 -2.3236 38 1 7.9394 2.5942 -0.6610 39 1 6.6950 0.6350 0.2116 40 1 6.4569 0.0457 -1.4510 41 1 7.5816 -2.9347 0.3962 42 1 4.8922 2.7442 2.5142 43 1 4.1379 3.9516 4.5233 44 1 2.2699 5.5488 4.3711 45 1 1.1604 5.9431 2.2085 46 1 1.9194 4.7410 0.1980 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172483656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:26 Heat of formation + Delta-G solvation = -93.722242 kcal Electronic energy + Delta-G solvation = -25719.933719 eV Core-core repulsion = 22187.176038 eV Total energy + Delta-G solvation = -3532.757681 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.93095 -40.02669 -38.71637 -37.44995 -35.46692 -34.19808 -32.58860 -31.79013 -31.56860 -30.30248 -27.61290 -26.82734 -24.32743 -23.54650 -23.20787 -22.94413 -21.45360 -21.11107 -19.00230 -18.60873 -18.01860 -17.73991 -17.39867 -16.77460 -16.55956 -16.22546 -15.71302 -15.22998 -15.11255 -14.70303 -14.46426 -14.38330 -14.19477 -14.01341 -13.66924 -13.65786 -13.44216 -13.20505 -13.08521 -12.92159 -12.82941 -12.60530 -12.54722 -12.42116 -12.19480 -11.94319 -11.86123 -11.73731 -11.60742 -11.57155 -11.28308 -10.96366 -10.54255 -9.79581 -9.72672 -9.60944 -8.16933 -6.30555 0.38223 0.56335 1.11200 1.35754 1.39980 1.47615 1.64290 2.39558 2.81143 3.12471 3.16049 3.58950 3.76309 3.83420 3.92818 4.04549 4.05933 4.19352 4.22784 4.28459 4.31481 4.35890 4.42131 4.67718 4.73088 4.77269 4.79048 4.87594 4.93152 5.01077 5.04378 5.06673 5.09268 5.19994 5.23061 5.39864 5.43365 5.52236 5.58821 5.63768 5.66959 5.74268 5.88711 5.97227 6.10518 6.15333 6.25714 6.67330 6.88910 7.38377 8.93111 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012566 B = 0.004208 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.744367 B = 6651.856839 C = 7388.861369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.051 3.949 3 O -0.351 6.351 4 C 0.423 3.577 5 O -0.522 6.522 6 C 0.143 3.857 7 H 0.141 0.859 8 N -0.649 5.649 9 C 0.084 3.916 10 H 0.023 0.977 11 C -0.127 4.127 12 C -0.104 4.104 13 C 0.042 3.958 14 C -0.548 4.548 15 H 0.060 0.940 16 C -0.001 4.001 17 N -0.929 5.929 18 Si 0.964 3.036 19 H -0.265 1.265 20 H -0.284 1.284 21 H -0.266 1.266 22 C -0.081 4.081 23 C -0.117 4.117 24 C -0.131 4.131 25 C -0.116 4.116 26 C -0.119 4.119 27 C -0.101 4.101 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.346 0.654 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.060 0.940 38 H 0.058 0.942 39 H -0.006 1.006 40 H -0.027 1.027 41 H 0.260 0.740 42 H 0.096 0.904 43 H 0.132 0.868 44 H 0.149 0.851 45 H 0.155 0.845 46 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.602 15.484 2.462 22.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.023 4.023 3 O -0.267 6.267 4 C 0.264 3.736 5 O -0.409 6.409 6 C 0.030 3.970 7 H 0.158 0.842 8 N -0.282 5.282 9 C -0.025 4.025 10 H 0.041 0.959 11 C -0.185 4.185 12 C -0.142 4.142 13 C 0.005 3.995 14 C -0.586 4.586 15 H 0.078 0.922 16 C -0.199 4.199 17 N -0.569 5.569 18 Si 0.788 3.212 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.191 1.191 22 C -0.082 4.082 23 C -0.136 4.136 24 C -0.149 4.149 25 C -0.134 4.134 26 C -0.137 4.137 27 C -0.120 4.120 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.168 0.832 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.079 0.921 38 H 0.077 0.923 39 H 0.012 0.988 40 H -0.009 1.009 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.150 0.850 44 H 0.167 0.833 45 H 0.172 0.828 46 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -16.357 15.668 2.531 22.791 hybrid contribution 0.947 -2.536 -0.065 2.708 sum -15.410 13.132 2.465 20.396 Atomic orbital electron populations 1.21773 0.89213 1.04320 1.04093 1.23224 0.97805 0.79862 1.01455 1.86505 1.23745 1.32845 1.83606 1.25686 0.81324 0.94602 0.72007 1.90922 1.60893 1.43829 1.45303 1.20493 0.88627 0.87331 1.00505 0.84183 1.61201 1.04183 1.51105 1.11702 1.21656 0.95412 0.97209 0.88240 0.95863 1.21748 1.02626 0.94181 0.99933 1.21670 0.95707 0.95978 1.00806 1.18821 0.94601 0.91834 0.94268 1.21725 0.94876 0.98616 1.43357 0.92175 1.26019 1.00658 0.98311 0.94869 1.70185 1.30662 1.11402 1.44624 0.85526 0.79413 0.77265 0.78966 1.19009 1.20961 1.19061 1.19280 0.97800 0.98773 0.92312 1.21010 0.99234 0.99931 0.93396 1.21330 0.98138 0.97269 0.98140 1.21521 0.95346 0.97461 0.99078 1.21460 1.00473 0.99780 0.91956 1.21223 0.95077 0.95125 1.00533 0.90839 0.90538 0.88530 0.92649 0.92906 0.83157 0.91790 0.91486 0.91351 0.92108 0.92280 0.98751 1.00852 0.93163 0.88548 0.84988 0.83345 0.82757 0.83738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.48 10.29 71.98 0.74 -1.74 16 2 C 0.05 1.44 6.19 71.98 0.45 1.88 16 3 O -0.35 -10.91 10.14 -51.39 -0.52 -11.43 16 4 C 0.42 15.47 6.93 71.24 0.49 15.97 16 5 O -0.52 -24.79 14.66 21.99 0.32 -24.47 16 6 C 0.14 4.37 2.52 43.42 0.11 4.48 16 7 H 0.14 3.52 6.97 -2.39 -0.02 3.50 16 8 N -0.65 -23.18 5.37 -477.16 -2.56 -25.74 16 9 C 0.08 3.04 2.29 44.91 0.10 3.15 16 10 H 0.02 0.92 7.64 -2.39 -0.02 0.90 16 11 C -0.13 -3.41 9.40 71.98 0.68 -2.73 16 12 C -0.10 -4.56 4.74 30.60 0.15 -4.42 16 13 C 0.04 2.39 4.45 29.85 0.13 2.52 16 14 C -0.55 -33.16 9.11 25.60 0.23 -32.93 16 15 H 0.06 3.46 7.74 -2.91 -0.02 3.43 16 16 C 0.00 -0.05 5.46 84.65 0.46 0.42 16 17 N -0.93 -60.55 13.29 21.45 0.28 -60.26 16 18 Si 0.96 46.58 29.54 68.60 2.03 48.61 16 19 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 20 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 21 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 22 C -0.08 -2.19 4.88 -19.86 -0.10 -2.28 16 23 C -0.12 -3.40 9.32 22.27 0.21 -3.20 16 24 C -0.13 -3.02 10.05 22.27 0.22 -2.80 16 25 C -0.12 -2.08 10.05 22.27 0.22 -1.86 16 26 C -0.12 -2.00 10.05 22.27 0.22 -1.78 16 27 C -0.10 -2.07 9.67 22.27 0.22 -1.85 16 28 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.21 16 30 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 31 H 0.06 1.70 8.13 -2.39 -0.02 1.68 16 32 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 33 H 0.35 15.01 4.84 -89.69 -0.43 14.58 16 34 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.07 1.64 8.14 -2.38 -0.02 1.62 16 36 H 0.07 1.52 7.43 -2.39 -0.02 1.50 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 38 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 39 H -0.01 -0.35 6.05 -2.39 -0.01 -0.37 16 40 H -0.03 -1.73 8.14 -2.39 -0.02 -1.75 16 41 H 0.26 15.96 8.31 -92.71 -0.77 15.19 16 42 H 0.10 3.26 7.26 -2.91 -0.02 3.24 16 43 H 0.13 2.62 8.06 -2.91 -0.02 2.60 16 44 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 45 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 46 H 0.14 2.24 8.04 -2.91 -0.02 2.21 16 Total: -1.00 -77.09 379.55 4.61 -72.49 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: 0.52 Total: 27.99 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.54 Total: -27.18 kcal Atomic # 7 Polarization: -83.73 SS G_CDS: -2.28 Total: -86.00 kcal Atomic # 8 Polarization: -35.70 SS G_CDS: -0.20 Total: -35.90 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -77.09 4.61 -72.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.235 kcal (2) G-P(sol) polarization free energy of solvation -77.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds