Wall clock time and date at job start Tue Mar 31 2020 10:07:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45199 * 109.46904 * 2 1 4 4 C 1.34233 * 116.99700 * 180.02562 * 3 2 1 5 5 O 1.20827 * 119.99812 * 0.02562 * 4 3 2 6 6 C 1.50699 * 120.00015 * 180.02562 * 4 3 2 7 7 H 1.09000 * 109.46670 * 300.00164 * 6 4 3 8 8 N 1.46893 * 109.46985 * 179.97438 * 6 4 3 9 9 C 1.46905 * 110.99865 * 85.00394 * 8 6 4 10 10 H 1.08997 * 109.47159 * 34.99589 * 9 8 6 11 11 C 1.53002 * 109.47037 * 274.99706 * 9 8 6 12 12 C 1.53007 * 109.47304 * 154.99946 * 9 8 6 13 13 C 1.53000 * 109.46834 * 294.99795 * 12 9 8 14 14 C 1.50695 * 109.46922 * 179.97438 * 13 12 9 15 15 H 1.07991 * 120.00303 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99778 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99864 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99787 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47221 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.47170 * 119.99934 * 18 16 14 21 21 H 1.48503 * 109.47116 * 240.00173 * 18 16 14 22 22 C 1.50706 * 109.46817 * 59.99941 * 6 4 3 23 23 C 1.38237 * 119.99849 * 79.72840 * 22 6 4 24 24 C 1.38229 * 119.99717 * 179.78570 * 23 22 6 25 25 C 1.38244 * 120.00224 * 0.43831 * 24 23 22 26 26 C 1.38231 * 119.99698 * 359.81427 * 25 24 23 27 27 C 1.38234 * 120.00024 * 259.99569 * 22 6 4 28 28 H 1.08999 * 109.46966 * 299.99821 * 1 2 3 29 29 H 1.08996 * 109.47558 * 59.99834 * 1 2 3 30 30 H 1.08998 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46966 * 240.00179 * 2 1 3 32 32 H 1.09004 * 109.46961 * 120.00002 * 2 1 3 33 33 H 1.00903 * 111.00220 * 208.95505 * 8 6 4 34 34 H 1.08997 * 109.47051 * 299.99950 * 11 9 8 35 35 H 1.09003 * 109.46983 * 59.99363 * 11 9 8 36 36 H 1.08999 * 109.47308 * 179.97438 * 11 9 8 37 37 H 1.09002 * 109.46962 * 54.99606 * 12 9 8 38 38 H 1.08993 * 109.46844 * 174.99908 * 12 9 8 39 39 H 1.08998 * 109.47221 * 300.00414 * 13 12 9 40 40 H 1.09004 * 109.47167 * 59.99715 * 13 12 9 41 41 H 0.97001 * 119.99880 * 180.02562 * 17 16 14 42 42 H 1.07997 * 119.99868 * 359.97438 * 23 22 6 43 43 H 1.07998 * 120.00151 * 180.27342 * 24 23 22 44 44 H 1.08001 * 120.00197 * 179.83499 * 25 24 23 45 45 H 1.07994 * 119.99827 * 179.97438 * 26 25 24 46 46 H 1.08003 * 119.99908 * 359.97438 * 27 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0807 0.5866 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5843 3.4700 -0.8895 8 7 5.3877 2.8604 -0.0001 9 6 5.9070 2.7142 -1.3665 10 1 5.2800 3.2794 -2.0560 11 6 5.8950 1.2360 -1.7611 12 6 7.3402 3.2465 -1.4271 13 6 7.3369 4.7520 -1.1544 14 6 8.7485 5.2763 -1.2135 15 1 9.5661 4.6032 -1.4248 16 6 8.9961 6.6156 -0.9987 17 7 8.0004 7.4353 -0.7418 18 14 10.7457 7.2655 -1.0727 19 1 11.6763 6.1486 -1.3755 20 1 10.8463 8.2965 -2.1367 21 1 11.1057 7.8681 0.2360 22 6 3.4568 3.6724 1.2312 23 6 4.0773 3.4467 2.4457 24 6 3.6546 4.1241 3.5741 25 6 2.6056 5.0205 3.4898 26 6 1.9818 5.2422 2.2764 27 6 2.4072 4.5680 1.1471 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.7920 3.6644 0.4562 34 1 6.5220 0.6707 -1.0717 35 1 4.8740 0.8567 -1.7178 36 1 6.2799 1.1274 -2.7751 37 1 7.9472 2.7424 -0.6751 38 1 7.7564 3.0574 -2.4165 39 1 6.7299 5.2562 -1.9063 40 1 6.9206 4.9411 -0.1649 41 1 8.1745 8.3776 -0.5911 42 1 4.8941 2.7434 2.5123 43 1 4.1422 3.9512 4.5221 44 1 2.2736 5.5478 4.3720 45 1 1.1620 5.9422 2.2106 46 1 1.9200 4.7414 0.1989 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172483657.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:07:32 Heat of formation + Delta-G solvation = -68.598006 kcal Electronic energy + Delta-G solvation = -25522.765508 eV Core-core repulsion = 21991.097295 eV Total energy + Delta-G solvation = -3531.668212 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -40.65022 -39.07141 -37.36492 -36.07492 -33.76168 -32.59293 -31.69906 -30.84717 -29.95991 -28.83090 -26.47248 -24.92489 -23.34692 -22.55189 -22.00321 -21.44544 -20.30300 -19.53683 -17.80317 -17.00460 -16.51731 -16.31601 -16.22622 -15.32266 -15.25126 -14.56525 -14.50009 -14.19357 -14.16482 -13.41968 -13.26718 -13.09189 -12.94362 -12.69848 -12.58754 -12.44136 -12.32572 -12.00139 -11.71630 -11.51188 -11.36795 -11.12774 -11.07785 -10.96029 -10.91366 -10.52322 -10.47908 -10.22911 -10.08376 -9.76942 -9.26226 -9.00419 -8.82387 -8.70266 -8.37043 -8.18596 -6.00544 -4.02396 1.32681 1.49874 2.39674 2.66201 3.31172 3.38845 3.43400 3.83817 4.42791 4.46316 4.64969 4.77230 4.78587 4.90757 4.98881 5.06884 5.11503 5.20967 5.30995 5.35539 5.51493 5.55844 5.59632 5.61336 5.68247 5.77891 5.81648 5.95575 5.98793 6.11941 6.23482 6.43239 6.45688 6.51521 6.53521 6.58249 6.63345 6.74552 6.93944 7.04493 7.07355 7.31824 7.59471 7.75801 7.79641 7.98474 7.99519 8.42477 9.04285 9.61859 11.10567 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013999 B = 0.004021 C = 0.003318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1999.722617 B = 6961.900208 C = 8436.213654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.062 3.938 3 O -0.360 6.360 4 C 0.464 3.536 5 O -0.473 6.473 6 C 0.143 3.857 7 H 0.087 0.913 8 N -0.662 5.662 9 C 0.083 3.917 10 H 0.039 0.961 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.020 3.980 14 C -0.518 4.518 15 H 0.056 0.944 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.891 3.109 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.284 1.284 22 C -0.092 4.092 23 C -0.092 4.092 24 C -0.122 4.122 25 C -0.115 4.115 26 C -0.123 4.123 27 C -0.095 4.095 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.368 0.632 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.043 0.957 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.013 0.987 40 H 0.015 0.985 41 H 0.259 0.741 42 H 0.133 0.867 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.122 0.878 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.880 -10.300 4.814 20.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.277 6.277 4 C 0.305 3.695 5 O -0.358 6.358 6 C 0.031 3.969 7 H 0.104 0.896 8 N -0.301 5.301 9 C -0.026 4.026 10 H 0.057 0.943 11 C -0.195 4.195 12 C -0.151 4.151 13 C -0.017 4.017 14 C -0.556 4.556 15 H 0.074 0.926 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.719 3.281 19 H -0.197 1.197 20 H -0.211 1.211 21 H -0.210 1.210 22 C -0.092 4.092 23 C -0.111 4.111 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.141 4.141 27 C -0.113 4.113 28 H 0.085 0.915 29 H 0.085 0.915 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.194 0.806 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.031 0.969 40 H 0.033 0.967 41 H 0.069 0.931 42 H 0.150 0.850 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.666 -11.113 4.977 20.640 hybrid contribution 0.861 1.257 -0.383 1.571 sum -15.805 -9.856 4.595 19.184 Atomic orbital electron populations 1.21787 0.92879 1.02687 1.03465 1.22943 0.95140 0.80749 1.02343 1.86514 1.24949 1.31797 1.84487 1.23646 0.80136 0.92665 0.73097 1.90628 1.59944 1.42491 1.42740 1.19872 0.91160 0.88456 0.97363 0.89551 1.60205 1.00908 1.49036 1.19934 1.21785 0.97591 0.96106 0.87132 0.94318 1.21987 1.02190 0.95832 0.99481 1.21834 0.92650 0.99430 1.01231 1.19144 0.97227 0.88915 0.96456 1.21259 0.93156 0.93338 1.47863 0.92599 1.25020 0.96944 0.97144 0.95316 1.69966 1.30699 1.04001 1.48723 0.86557 0.85095 0.78906 0.77580 1.19729 1.21083 1.21032 1.19479 0.97634 0.98321 0.93779 1.21136 0.99154 0.99095 0.91690 1.21144 0.97272 0.97057 0.98537 1.21180 0.96322 0.98057 0.97735 1.21065 1.00372 0.99941 0.92717 1.21002 0.95855 0.95555 0.98901 0.91536 0.91550 0.90488 0.91496 0.91471 0.80611 0.92109 0.92655 0.93823 0.92254 0.92462 0.96894 0.96713 0.93111 0.84952 0.85946 0.86201 0.85990 0.85848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.66 6.19 37.16 0.23 0.89 16 3 O -0.36 -4.79 10.14 -39.27 -0.40 -5.19 16 4 C 0.46 7.06 6.57 36.01 0.24 7.30 16 5 O -0.47 -8.12 12.77 -18.75 -0.24 -8.36 16 6 C 0.14 2.18 2.73 -70.02 -0.19 1.99 16 7 H 0.09 1.27 7.29 -51.93 -0.38 0.89 16 8 N -0.66 -11.45 5.22 -102.17 -0.53 -11.98 16 9 C 0.08 1.49 2.65 -67.71 -0.18 1.31 16 10 H 0.04 0.70 7.43 -51.93 -0.39 0.31 16 11 C -0.14 -2.30 8.24 37.16 0.31 -1.99 16 12 C -0.11 -2.36 4.74 -26.73 -0.13 -2.49 16 13 C 0.02 0.50 4.80 -27.89 -0.13 0.36 16 14 C -0.52 -14.60 9.11 -34.44 -0.31 -14.92 16 15 H 0.06 1.55 7.74 -52.49 -0.41 1.14 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.63 13.29 55.43 0.74 -25.89 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 22 C -0.09 -1.32 4.63 -104.62 -0.48 -1.81 16 23 C -0.09 -1.32 9.01 -39.58 -0.36 -1.68 16 24 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 25 C -0.11 -1.33 10.05 -39.58 -0.40 -1.73 16 26 C -0.12 -1.45 10.05 -39.58 -0.40 -1.84 16 27 C -0.09 -1.23 9.67 -39.58 -0.38 -1.61 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.37 6.89 5.73 -39.29 -0.23 6.67 16 34 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 35 H 0.05 0.92 5.07 -51.93 -0.26 0.66 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.01 0.39 6.43 -51.93 -0.33 0.05 16 41 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.13 1.95 7.73 -52.49 -0.41 1.54 16 43 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 44 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 45 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 46 H 0.12 1.40 8.04 -52.48 -0.42 0.98 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -31.41 375.83 -9.55 -40.95 By element: Atomic # 1 Polarization: 12.94 SS G_CDS: -7.45 Total: 5.49 kcal Atomic # 6 Polarization: -15.08 SS G_CDS: -2.30 Total: -17.38 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: 0.20 Total: -37.87 kcal Atomic # 8 Polarization: -12.91 SS G_CDS: -0.64 Total: -13.55 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.41 -9.55 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172483657.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.644 kcal (2) G-P(sol) polarization free energy of solvation -31.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds