Wall clock time and date at job start Tue Mar 31 2020 10:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45201 * 109.46879 * 2 1 4 4 C 1.34714 * 116.99834 * 180.02562 * 3 2 1 5 5 O 1.21480 * 119.99967 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00231 * 179.97438 * 4 3 2 7 7 C 1.39631 * 120.14933 * 179.97438 * 6 4 3 8 8 C 1.37947 * 119.84336 * 180.02562 * 7 6 4 9 9 C 1.38367 * 120.15237 * 0.02562 * 8 7 6 10 10 C 1.50700 * 119.84610 * 179.97438 * 9 8 7 11 11 N 1.46904 * 109.47105 * 90.00061 * 10 9 8 12 12 C 1.46906 * 110.99716 * 179.97438 * 11 10 9 13 13 H 1.08996 * 109.46825 * 35.00670 * 12 11 10 14 14 C 1.52997 * 109.47302 * 274.99847 * 12 11 10 15 15 C 1.52999 * 109.46507 * 154.99875 * 12 11 10 16 16 C 1.53002 * 109.47645 * 294.99785 * 15 12 11 17 17 C 1.50699 * 109.47073 * 180.02562 * 16 15 12 18 18 H 1.07993 * 120.00513 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99345 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99587 * 179.97438 * 19 17 16 21 21 Si 1.86793 * 120.00372 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47217 * 89.99855 * 21 19 17 23 23 H 1.48503 * 109.47022 * 209.99597 * 21 19 17 24 24 H 1.48496 * 109.47195 * 329.99736 * 21 19 17 25 25 C 1.38363 * 120.30282 * 0.23242 * 9 8 7 26 26 C 1.37944 * 120.15033 * 359.48845 * 25 9 8 27 27 H 1.09007 * 109.46819 * 299.99941 * 1 2 3 28 28 H 1.09000 * 109.47204 * 59.99689 * 1 2 3 29 29 H 1.08995 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47089 * 240.00513 * 2 1 3 31 31 H 1.08997 * 109.47484 * 119.99877 * 2 1 3 32 32 H 1.07996 * 120.08191 * 0.02562 * 7 6 4 33 33 H 1.08000 * 119.92080 * 180.02562 * 8 7 6 34 34 H 1.08996 * 109.47653 * 330.00058 * 10 9 8 35 35 H 1.09007 * 109.47191 * 209.99911 * 10 9 8 36 36 H 1.00900 * 110.99849 * 56.04996 * 11 10 9 37 37 H 1.09002 * 109.47153 * 180.02562 * 14 12 11 38 38 H 1.09001 * 109.46832 * 60.00356 * 14 12 11 39 39 H 1.09004 * 109.47261 * 300.00337 * 14 12 11 40 40 H 1.09001 * 109.47317 * 55.00601 * 15 12 11 41 41 H 1.09006 * 109.47194 * 175.00237 * 15 12 11 42 42 H 1.08993 * 109.47092 * 300.00720 * 16 15 12 43 43 H 1.09007 * 109.46700 * 60.00493 * 16 15 12 44 44 H 0.97000 * 119.99940 * 180.02562 * 20 19 17 45 45 H 1.08004 * 119.92731 * 179.72455 * 25 9 8 46 46 H 1.08005 * 120.07613 * 180.25852 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 -0.0005 5 8 4.0895 0.5821 -0.0015 6 6 3.9141 2.9106 -0.0011 7 6 5.2979 3.0971 -0.0012 8 6 5.8184 4.3746 -0.0012 9 6 4.9726 5.4697 -0.0007 10 6 5.5487 6.8622 -0.0001 11 7 5.7358 7.3153 -1.3850 12 6 6.2965 8.6726 -1.4236 13 1 6.9886 8.8035 -0.5917 14 6 5.1644 9.6956 -1.3112 15 6 7.0414 8.8791 -2.7439 16 6 8.2485 7.9407 -2.8009 17 6 8.9824 8.1447 -4.1012 18 1 8.6241 8.8712 -4.8153 19 6 10.1121 7.4043 -4.3785 20 7 10.7524 7.5820 -5.5136 21 14 10.7323 6.1482 -3.1430 22 1 10.1037 4.8311 -3.4181 23 1 12.2077 6.0264 -3.2591 24 1 10.3785 6.5883 -1.7696 25 6 3.6005 5.2920 0.0047 26 6 3.0665 4.0201 -0.0010 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 5.9592 2.2433 -0.0011 33 1 6.8885 4.5203 -0.0016 34 1 6.5100 6.8577 0.5136 35 1 4.8652 7.5380 0.5140 36 1 4.8701 7.2673 -1.9012 37 1 5.5805 10.7026 -1.3403 38 1 4.6338 9.5483 -0.3705 39 1 4.4724 9.5645 -2.1431 40 1 6.3723 8.6615 -3.5765 41 1 7.3813 9.9126 -2.8116 42 1 8.9175 8.1583 -1.9684 43 1 7.9087 6.9072 -2.7333 44 1 11.5469 7.0609 -5.7089 45 1 2.9459 6.1511 0.0096 46 1 1.9952 3.8828 -0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172488021.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:03:58 Heat of formation + Delta-G solvation = -99.544975 kcal Electronic energy + Delta-G solvation = -24054.363406 eV Core-core repulsion = 20521.353232 eV Total energy + Delta-G solvation = -3533.010174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.68707 -40.16121 -38.41233 -37.68533 -35.39242 -34.12027 -32.80126 -32.03684 -31.96011 -30.29219 -27.20399 -26.75113 -24.52885 -23.64594 -23.21337 -22.71853 -21.70345 -21.32908 -19.14754 -18.81817 -18.13545 -17.64140 -16.85530 -16.50455 -16.33340 -16.24526 -15.56709 -15.33801 -15.23195 -14.88695 -14.55511 -14.49739 -14.34000 -14.12873 -13.91102 -13.63210 -13.49567 -13.29512 -13.05415 -12.94675 -12.86632 -12.83076 -12.56180 -12.31214 -12.02600 -11.89217 -11.75778 -11.61735 -11.57961 -11.46785 -11.30088 -11.09009 -10.70640 -10.00737 -9.95487 -9.12824 -8.25476 -6.27005 -0.40578 0.37899 1.37482 1.38848 1.40743 1.51365 1.55000 2.39745 2.69313 3.11253 3.43018 3.56827 3.81310 3.88035 3.97049 3.98346 4.05373 4.07631 4.24635 4.32050 4.37005 4.38172 4.48639 4.64534 4.67594 4.77293 4.78566 4.86854 4.91544 4.96590 5.02102 5.06258 5.08437 5.08943 5.22155 5.29752 5.29976 5.39487 5.41660 5.56833 5.64313 5.72754 5.79647 5.83997 6.24270 6.36403 6.59841 6.61876 6.82349 7.37272 8.91738 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014436 B = 0.002920 C = 0.002575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.176050 B = 9585.519205 C =10869.858587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.352 6.352 4 C 0.512 3.488 5 O -0.542 6.542 6 C -0.148 4.148 7 C -0.066 4.066 8 C -0.121 4.121 9 C -0.041 4.041 10 C 0.096 3.904 11 N -0.690 5.690 12 C 0.092 3.908 13 H 0.074 0.926 14 C -0.171 4.171 15 C -0.086 4.086 16 C 0.001 3.999 17 C -0.528 4.528 18 H 0.027 0.973 19 C -0.001 4.001 20 N -0.957 5.957 21 Si 0.953 3.047 22 H -0.271 1.271 23 H -0.288 1.288 24 H -0.245 1.245 25 C -0.121 4.121 26 C -0.055 4.055 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.070 0.930 32 H 0.128 0.872 33 H 0.131 0.869 34 H 0.077 0.923 35 H 0.066 0.934 36 H 0.346 0.654 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.008 0.992 43 H 0.025 0.975 44 H 0.264 0.736 45 H 0.159 0.841 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.819 -8.871 18.183 31.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.021 4.021 3 O -0.269 6.269 4 C 0.359 3.641 5 O -0.434 6.434 6 C -0.150 4.150 7 C -0.085 4.085 8 C -0.139 4.139 9 C -0.042 4.042 10 C -0.033 4.033 11 N -0.321 5.321 12 C -0.018 4.018 13 H 0.092 0.908 14 C -0.230 4.230 15 C -0.124 4.124 16 C -0.036 4.036 17 C -0.566 4.566 18 H 0.046 0.954 19 C -0.196 4.196 20 N -0.599 5.599 21 Si 0.777 3.223 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.168 1.168 25 C -0.139 4.139 26 C -0.073 4.073 27 H 0.091 0.909 28 H 0.088 0.912 29 H 0.118 0.882 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.146 0.854 33 H 0.149 0.851 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.165 0.835 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.177 0.823 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -22.896 -9.530 18.028 30.660 hybrid contribution 0.361 -0.341 -0.103 0.507 sum -22.535 -9.871 17.925 30.439 Atomic orbital electron populations 1.21828 0.89985 1.04492 1.03908 1.23350 0.97295 0.78831 1.02606 1.86535 1.22649 1.33952 1.83725 1.21443 0.80966 0.89968 0.71720 1.90815 1.61219 1.43560 1.47760 1.19177 0.94230 0.90131 1.11442 1.21288 0.93621 0.98129 0.95417 1.21153 1.00902 0.91474 1.00415 1.20289 0.93929 0.95405 0.94570 1.21007 1.00846 0.91087 0.90320 1.60464 1.33864 1.25000 1.12812 1.21538 0.95905 0.86842 0.97509 0.90752 1.22401 0.98568 0.99772 1.02264 1.21358 0.96346 0.98253 0.96490 1.19368 0.93903 0.96854 0.93474 1.21687 1.10189 1.20836 1.03871 0.95416 1.26033 0.96909 0.99439 0.97262 1.70091 1.20350 1.43485 1.25937 0.85612 0.76787 0.79183 0.80724 1.19684 1.21367 1.16808 1.21340 0.94272 0.97893 1.00364 1.21622 1.00824 0.90963 0.93846 0.90920 0.91197 0.88155 0.91527 0.91160 0.85382 0.85081 0.90427 0.91598 0.83506 0.91978 0.91096 0.92260 0.93841 0.93337 0.97384 0.95646 0.92778 0.82311 0.82452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.29 71.98 0.74 -0.49 16 2 C 0.05 0.80 6.19 71.98 0.45 1.24 16 3 O -0.35 -7.00 9.47 -56.24 -0.53 -7.53 16 4 C 0.51 12.68 7.90 70.33 0.56 13.24 16 5 O -0.54 -16.50 16.14 19.90 0.32 -16.17 16 6 C -0.15 -3.40 5.87 -20.10 -0.12 -3.51 16 7 C -0.07 -1.63 9.60 22.54 0.22 -1.41 16 8 C -0.12 -2.86 9.68 22.23 0.22 -2.64 16 9 C -0.04 -0.83 5.40 -19.80 -0.11 -0.94 16 10 C 0.10 1.89 5.60 85.56 0.48 2.37 16 11 N -0.69 -17.55 5.69 -495.56 -2.82 -20.37 16 12 C 0.09 2.48 2.59 44.91 0.12 2.60 16 13 H 0.07 2.02 7.80 -2.39 -0.02 2.00 16 14 C -0.17 -3.45 9.16 71.98 0.66 -2.79 16 15 C -0.09 -3.28 4.83 30.59 0.15 -3.13 16 16 C 0.00 0.07 3.93 29.85 0.12 0.19 16 17 C -0.53 -31.51 9.66 25.60 0.25 -31.26 16 18 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 19 C 0.00 -0.05 5.47 84.65 0.46 0.42 16 20 N -0.96 -62.26 13.96 21.45 0.30 -61.96 16 21 Si 0.95 46.59 27.47 68.60 1.88 48.48 16 22 H -0.27 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 24 H -0.24 -11.04 6.54 99.48 0.65 -10.39 16 25 C -0.12 -1.93 9.68 22.23 0.22 -1.72 16 26 C -0.05 -0.95 9.62 22.54 0.22 -0.73 16 27 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.13 3.24 7.65 -2.91 -0.02 3.22 16 33 H 0.13 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.08 1.65 8.00 -2.39 -0.02 1.63 16 35 H 0.07 0.97 7.37 -2.38 -0.02 0.96 16 36 H 0.35 7.93 8.46 -89.69 -0.76 7.17 16 37 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.10 7.45 -2.39 -0.02 1.09 16 39 H 0.06 1.17 8.13 -2.38 -0.02 1.15 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.05 1.86 8.14 -2.38 -0.02 1.84 16 42 H 0.01 0.37 7.20 -2.39 -0.02 0.36 16 43 H 0.03 1.22 7.18 -2.38 -0.02 1.20 16 44 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 45 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 46 H 0.16 2.00 7.61 -2.91 -0.02 1.98 16 Total: -1.00 -74.86 383.35 3.90 -70.96 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.14 Total: 15.16 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 4.61 Total: -28.57 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.52 Total: -82.32 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.21 Total: -23.70 kcal Atomic # 14 Polarization: 46.59 SS G_CDS: 1.88 Total: 48.48 kcal Total: -74.86 3.90 -70.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172488021.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.586 kcal (2) G-P(sol) polarization free energy of solvation -74.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds