Wall clock time and date at job start Tue Mar 31 2020 08:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47592 * 2 1 4 4 C 1.46902 * 111.00063 * 287.28924 * 3 2 1 5 5 C 1.50705 * 109.47049 * 76.11074 * 4 3 2 6 6 H 1.07997 * 120.00145 * 5.17019 * 5 4 3 7 7 C 1.37879 * 119.99774 * 185.16221 * 5 4 3 8 8 N 1.31511 * 120.00021 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99701 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47162 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47144 * 120.00063 * 9 7 5 12 12 H 1.48496 * 109.46974 * 239.99976 * 9 7 5 13 13 C 1.46897 * 111.00302 * 163.33452 * 3 2 1 14 14 H 1.09006 * 109.47046 * 178.95469 * 13 3 2 15 15 C 1.52997 * 109.47393 * 58.95357 * 13 3 2 16 16 C 1.52997 * 109.47132 * 298.95398 * 13 3 2 17 17 C 1.50707 * 109.47312 * 295.00173 * 16 13 3 18 18 C 1.38367 * 119.84673 * 269.73058 * 17 16 13 19 19 C 1.37950 * 120.14956 * 179.72380 * 18 17 16 20 20 C 1.39629 * 119.84362 * 0.56128 * 19 18 17 21 21 C 1.47730 * 120.14533 * 179.68635 * 20 19 18 22 22 O 1.21467 * 119.99653 * 180.02562 * 21 20 19 23 23 O 1.34706 * 120.00136 * 0.02562 * 21 20 19 24 24 C 1.45200 * 117.00024 * 179.97438 * 23 21 20 25 25 C 1.39626 * 119.70471 * 359.71081 * 20 19 18 26 26 C 1.37943 * 119.84547 * 359.97438 * 25 20 19 27 27 H 1.08998 * 109.47349 * 187.73132 * 1 2 3 28 28 H 1.09005 * 109.47151 * 67.73183 * 1 2 3 29 29 H 1.08996 * 109.46816 * 307.73395 * 1 2 3 30 30 H 1.09001 * 109.47411 * 120.00094 * 2 1 3 31 31 H 1.09002 * 109.47006 * 239.99806 * 2 1 3 32 32 H 1.08994 * 109.47427 * 196.11642 * 4 3 2 33 33 H 1.09000 * 109.46877 * 316.11758 * 4 3 2 34 34 H 0.97003 * 119.99891 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47008 * 59.99901 * 15 13 3 36 36 H 1.08992 * 109.47398 * 180.02562 * 15 13 3 37 37 H 1.09006 * 109.47115 * 300.00069 * 15 13 3 38 38 H 1.09003 * 109.47452 * 54.99930 * 16 13 3 39 39 H 1.09004 * 109.47319 * 175.00239 * 16 13 3 40 40 H 1.08001 * 119.92656 * 359.96859 * 18 17 16 41 41 H 1.07997 * 120.07702 * 180.27078 * 19 18 17 42 42 H 1.09002 * 109.47395 * 180.02562 * 24 23 21 43 43 H 1.08993 * 109.47391 * 300.00607 * 24 23 21 44 44 H 1.09006 * 109.46612 * 60.00862 * 24 23 21 45 45 H 1.07994 * 120.07809 * 179.97438 * 25 20 19 46 46 H 1.08001 * 119.92593 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8110 2.0172 -1.3095 5 6 0.3576 2.3844 -1.4640 6 1 -0.3250 2.2465 -0.6385 7 6 -0.1007 2.8964 -2.6594 8 7 0.7304 3.0640 -3.6647 9 14 -1.9021 3.3523 -2.8507 10 1 -2.6217 3.0693 -1.5829 11 1 -2.0155 4.7975 -3.1729 12 1 -2.5013 2.5519 -3.9486 13 6 3.4339 1.4433 0.3933 14 1 3.7759 2.4779 0.3670 15 6 4.2683 0.6054 -0.5776 16 6 3.5923 0.8897 1.8108 17 6 2.8705 1.7861 2.7838 18 6 3.5412 2.8422 3.3749 19 6 2.8850 3.6701 4.2621 20 6 1.5443 3.4331 4.5720 21 6 0.8371 4.3113 5.5265 22 8 -0.3290 4.1024 5.7946 23 8 1.4855 5.3437 6.0996 24 6 0.7280 6.1648 7.0270 25 6 0.8753 2.3622 3.9762 26 6 1.5417 1.5461 3.0858 27 1 -0.3634 -1.0183 0.1382 28 1 -0.3634 0.3894 -0.9511 29 1 -0.3633 0.6289 0.8127 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.4226 2.9166 -1.3804 33 1 2.0957 1.3211 -2.0985 34 1 0.4079 3.4239 -4.5058 35 1 4.1555 0.9998 -1.5875 36 1 5.3175 0.6484 -0.2855 37 1 3.9263 -0.4292 -0.5513 38 1 3.1690 -0.1137 1.8584 39 1 4.6505 0.8502 2.0693 40 1 4.5796 3.0212 3.1381 41 1 3.4084 4.4967 4.7194 42 1 1.3666 6.9584 7.4149 43 1 -0.1245 6.6051 6.5098 44 1 0.3730 5.5475 7.8523 45 1 -0.1616 2.1731 4.2119 46 1 1.0253 0.7177 2.6239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173728080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:07 Heat of formation + Delta-G solvation = -59.638931 kcal Electronic energy + Delta-G solvation = -25508.315910 eV Core-core repulsion = 21977.036193 eV Total energy + Delta-G solvation = -3531.279718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.85 seconds Orbital eigenvalues (eV) -40.51625 -39.19448 -37.62040 -36.40214 -33.56612 -32.22831 -31.19633 -30.71793 -28.97501 -28.01967 -26.53512 -26.28339 -23.08903 -22.64015 -22.27236 -21.66460 -20.51386 -18.67585 -17.96583 -17.09660 -16.43075 -16.37020 -15.52880 -15.36239 -14.73373 -14.54376 -14.38177 -14.07806 -13.83298 -13.55834 -13.40929 -13.19437 -13.03938 -12.53414 -12.24385 -12.20733 -11.94694 -11.80909 -11.78075 -11.25259 -11.15516 -11.02831 -10.90536 -10.88858 -10.81531 -10.69205 -10.44529 -10.41905 -10.24219 -10.09514 -9.42328 -9.06768 -8.79232 -8.54065 -8.35963 -7.19534 -5.98854 -3.96654 0.85094 1.58972 2.62901 2.67340 3.32533 3.40840 3.45776 3.95331 4.44490 4.71399 4.80277 4.95949 5.01558 5.03221 5.04312 5.11479 5.32948 5.35824 5.38315 5.49334 5.55895 5.64001 5.76430 5.77362 5.86823 5.94964 6.10259 6.11173 6.18600 6.20189 6.23511 6.36770 6.40433 6.43794 6.55429 6.61515 6.64761 6.82096 6.91454 7.06078 7.23584 7.39134 7.42312 7.74537 7.88795 8.16826 8.24062 8.60073 9.10290 9.64940 11.11637 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.004341 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.585771 B = 6448.910709 C = 7839.624355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 N -0.525 5.525 4 C 0.194 3.806 5 C -0.497 4.497 6 H 0.072 0.928 7 C 0.053 3.947 8 N -0.901 5.901 9 Si 0.890 3.110 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.085 3.915 14 H 0.078 0.922 15 C -0.183 4.183 16 C -0.084 4.084 17 C -0.015 4.015 18 C -0.138 4.138 19 C -0.063 4.063 20 C -0.143 4.143 21 C 0.511 3.489 22 O -0.511 6.511 23 O -0.357 6.357 24 C 0.037 3.963 25 C -0.051 4.051 26 C -0.100 4.100 27 H 0.029 0.971 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.023 0.977 32 H 0.021 0.979 33 H -0.002 1.002 34 H 0.259 0.741 35 H 0.063 0.937 36 H 0.049 0.951 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.126 0.874 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.063 0.937 44 H 0.061 0.939 45 H 0.132 0.868 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.800 -1.408 16.841 18.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.067 4.067 3 N -0.250 5.250 4 C 0.069 3.931 5 C -0.536 4.536 6 H 0.090 0.910 7 C -0.148 4.148 8 N -0.541 5.541 9 Si 0.718 3.282 10 H -0.196 1.196 11 H -0.212 1.212 12 H -0.212 1.212 13 C -0.025 4.025 14 H 0.096 0.904 15 C -0.242 4.242 16 C -0.122 4.122 17 C -0.015 4.015 18 C -0.156 4.156 19 C -0.082 4.082 20 C -0.144 4.144 21 C 0.357 3.643 22 O -0.401 6.401 23 O -0.274 6.274 24 C -0.057 4.057 25 C -0.070 4.070 26 C -0.118 4.118 27 H 0.048 0.952 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.039 0.961 33 H 0.016 0.984 34 H 0.068 0.932 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.144 0.856 41 H 0.149 0.851 42 H 0.119 0.881 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.150 0.850 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 6.167 -1.103 17.113 18.224 hybrid contribution -0.662 0.101 -0.885 1.109 sum 5.505 -1.002 16.229 17.166 Atomic orbital electron populations 1.22073 0.95246 0.98589 1.04925 1.21947 0.96453 0.90073 0.98213 1.62389 1.13254 1.15689 1.33620 1.19734 0.97285 0.93382 0.82664 1.21376 0.94184 1.40237 0.97776 0.91020 1.24980 0.97566 0.96189 0.96065 1.69966 1.34474 1.46277 1.03394 0.86557 0.85471 0.78085 0.78060 1.19578 1.21170 1.21241 1.21658 0.90149 0.99099 0.91572 0.90428 1.22476 0.99576 1.00767 1.01346 1.20936 0.99239 0.98315 0.93681 1.20051 0.94030 0.94405 0.93005 1.20981 1.00381 0.95832 0.98359 1.21287 0.92883 0.98078 0.95918 1.18955 0.95136 0.98467 1.01857 1.21374 0.85018 0.78950 0.78927 1.90815 1.17287 1.71075 1.60908 1.86546 1.44575 1.40237 1.56028 1.23245 0.97014 0.93806 0.91628 1.21208 0.99815 0.92104 0.93830 1.21010 0.93936 1.00425 0.96437 0.95170 0.89207 0.92870 0.93104 0.95919 0.96119 0.98392 0.93169 0.91786 0.93237 0.92850 0.90433 0.90952 0.85614 0.85099 0.88139 0.91840 0.91990 0.85023 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.62 37.16 0.32 -2.48 16 2 C 0.06 1.09 4.07 -3.83 -0.02 1.07 16 3 N -0.53 -10.25 3.83 -228.09 -0.87 -11.13 16 4 C 0.19 4.79 3.90 -4.97 -0.02 4.77 16 5 C -0.50 -13.36 6.88 -34.44 -0.24 -13.60 16 6 H 0.07 1.92 6.06 -52.49 -0.32 1.60 16 7 C 0.05 1.46 5.46 -17.82 -0.10 1.37 16 8 N -0.90 -26.41 13.29 55.43 0.74 -25.67 16 9 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.08 1.36 2.30 -67.72 -0.16 1.21 16 14 H 0.08 1.34 7.95 -51.93 -0.41 0.92 16 15 C -0.18 -2.75 8.57 37.16 0.32 -2.43 16 16 C -0.08 -1.08 4.67 -27.88 -0.13 -1.21 16 17 C -0.01 -0.20 4.96 -104.52 -0.52 -0.72 16 18 C -0.14 -1.73 9.68 -39.64 -0.38 -2.11 16 19 C -0.06 -0.81 9.62 -39.17 -0.38 -1.19 16 20 C -0.14 -2.08 5.87 -104.98 -0.62 -2.69 16 21 C 0.51 7.58 7.90 34.61 0.27 7.85 16 22 O -0.51 -8.71 16.14 -19.24 -0.31 -9.02 16 23 O -0.36 -4.46 9.82 -40.51 -0.40 -4.86 16 24 C 0.04 0.33 10.56 101.05 1.07 1.40 16 25 C -0.05 -0.76 9.60 -39.17 -0.38 -1.14 16 26 C -0.10 -1.46 9.28 -39.64 -0.37 -1.83 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 1.97 5.63 -51.93 -0.29 1.68 16 29 H 0.05 0.99 7.49 -51.93 -0.39 0.60 16 30 H 0.05 0.77 5.27 -51.93 -0.27 0.49 16 31 H 0.02 0.43 6.93 -51.93 -0.36 0.07 16 32 H 0.02 0.56 7.81 -51.93 -0.41 0.15 16 33 H 0.00 -0.05 7.15 -51.93 -0.37 -0.42 16 34 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 35 H 0.06 1.12 7.01 -51.93 -0.36 0.76 16 36 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.78 6.78 -51.93 -0.35 0.42 16 38 H 0.08 0.96 5.83 -51.93 -0.30 0.66 16 39 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 40 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 41 H 0.13 1.41 7.61 -52.49 -0.40 1.01 16 42 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.13 1.92 7.65 -52.49 -0.40 1.52 16 46 H 0.13 1.92 6.78 -52.49 -0.36 1.57 16 LS Contribution 366.97 15.07 5.53 5.53 Total: -1.00 -30.86 366.97 -8.74 -39.60 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -7.09 Total: 0.70 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: -1.31 Total: -11.74 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: -0.14 Total: -36.80 kcal Atomic # 8 Polarization: -13.16 SS G_CDS: -0.71 Total: -13.87 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.86 -8.74 -39.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173728080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.044 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds