Wall clock time and date at job start Tue Mar 31 2020 08:43:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46897 * 109.47592 * 2 1 4 4 C 1.46902 * 111.00063 * 287.28924 * 3 2 1 5 5 C 1.50705 * 109.47049 * 76.11074 * 4 3 2 6 6 H 1.07997 * 120.00145 * 5.17019 * 5 4 3 7 7 C 1.37879 * 119.99774 * 185.16221 * 5 4 3 8 8 N 1.31511 * 120.00021 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99701 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47162 * 359.97438 * 9 7 5 11 11 H 1.48504 * 109.47144 * 120.00063 * 9 7 5 12 12 H 1.48496 * 109.46974 * 239.99976 * 9 7 5 13 13 C 1.46897 * 111.00302 * 163.33452 * 3 2 1 14 14 H 1.09006 * 109.47046 * 178.95469 * 13 3 2 15 15 C 1.52997 * 109.47393 * 58.95357 * 13 3 2 16 16 C 1.52997 * 109.47132 * 298.95398 * 13 3 2 17 17 C 1.50707 * 109.47312 * 295.00173 * 16 13 3 18 18 C 1.38367 * 119.84673 * 269.73058 * 17 16 13 19 19 C 1.37950 * 120.14956 * 179.72380 * 18 17 16 20 20 C 1.39629 * 119.84362 * 0.56128 * 19 18 17 21 21 C 1.47730 * 120.14533 * 179.68635 * 20 19 18 22 22 O 1.21467 * 119.99653 * 180.02562 * 21 20 19 23 23 O 1.34706 * 120.00136 * 0.02562 * 21 20 19 24 24 C 1.45200 * 117.00024 * 179.97438 * 23 21 20 25 25 C 1.39626 * 119.70471 * 359.71081 * 20 19 18 26 26 C 1.37943 * 119.84547 * 359.97438 * 25 20 19 27 27 H 1.08998 * 109.47349 * 187.73132 * 1 2 3 28 28 H 1.09005 * 109.47151 * 67.73183 * 1 2 3 29 29 H 1.08996 * 109.46816 * 307.73395 * 1 2 3 30 30 H 1.09001 * 109.47411 * 120.00094 * 2 1 3 31 31 H 1.09002 * 109.47006 * 239.99806 * 2 1 3 32 32 H 1.08994 * 109.47427 * 196.11642 * 4 3 2 33 33 H 1.09000 * 109.46877 * 316.11758 * 4 3 2 34 34 H 0.97003 * 119.99891 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47008 * 59.99901 * 15 13 3 36 36 H 1.08992 * 109.47398 * 180.02562 * 15 13 3 37 37 H 1.09006 * 109.47115 * 300.00069 * 15 13 3 38 38 H 1.09003 * 109.47452 * 54.99930 * 16 13 3 39 39 H 1.09004 * 109.47319 * 175.00239 * 16 13 3 40 40 H 1.08001 * 119.92656 * 359.96859 * 18 17 16 41 41 H 1.07997 * 120.07702 * 180.27078 * 19 18 17 42 42 H 1.09002 * 109.47395 * 180.02562 * 24 23 21 43 43 H 1.08993 * 109.47391 * 300.00607 * 24 23 21 44 44 H 1.09006 * 109.46612 * 60.00862 * 24 23 21 45 45 H 1.07994 * 120.07809 * 179.97438 * 25 20 19 46 46 H 1.08001 * 119.92593 * 180.02562 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3849 0.0000 4 6 1.8110 2.0172 -1.3095 5 6 0.3576 2.3844 -1.4640 6 1 -0.3250 2.2465 -0.6385 7 6 -0.1007 2.8964 -2.6594 8 7 0.7304 3.0640 -3.6647 9 14 -1.9021 3.3523 -2.8507 10 1 -2.6217 3.0693 -1.5829 11 1 -2.0155 4.7975 -3.1729 12 1 -2.5013 2.5519 -3.9486 13 6 3.4339 1.4433 0.3933 14 1 3.7759 2.4779 0.3670 15 6 4.2683 0.6054 -0.5776 16 6 3.5923 0.8897 1.8108 17 6 2.8705 1.7861 2.7838 18 6 3.5412 2.8422 3.3749 19 6 2.8850 3.6701 4.2621 20 6 1.5443 3.4331 4.5720 21 6 0.8371 4.3113 5.5265 22 8 -0.3290 4.1024 5.7946 23 8 1.4855 5.3437 6.0996 24 6 0.7280 6.1648 7.0270 25 6 0.8753 2.3622 3.9762 26 6 1.5417 1.5461 3.0858 27 1 -0.3634 -1.0183 0.1382 28 1 -0.3634 0.3894 -0.9511 29 1 -0.3633 0.6289 0.8127 30 1 1.8934 -0.5138 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 2.4226 2.9166 -1.3804 33 1 2.0957 1.3211 -2.0985 34 1 0.4079 3.4239 -4.5058 35 1 4.1555 0.9998 -1.5875 36 1 5.3175 0.6484 -0.2855 37 1 3.9263 -0.4292 -0.5513 38 1 3.1690 -0.1137 1.8584 39 1 4.6505 0.8502 2.0693 40 1 4.5796 3.0212 3.1381 41 1 3.4084 4.4967 4.7194 42 1 1.3666 6.9584 7.4149 43 1 -0.1245 6.6051 6.5098 44 1 0.3730 5.5475 7.8523 45 1 -0.1616 2.1731 4.2119 46 1 1.0253 0.7177 2.6239 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173728080.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:06 Heat of formation + Delta-G solvation = -76.482224 kcal Electronic energy + Delta-G solvation = -25509.046290 eV Core-core repulsion = 21977.036193 eV Total energy + Delta-G solvation = -3532.010098 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59152 -40.35989 -38.96253 -37.48789 -35.20546 -33.92953 -32.43116 -31.80917 -30.56866 -28.99589 -28.21623 -27.46225 -24.45732 -24.05505 -23.48175 -23.11617 -21.61412 -20.11347 -19.02496 -18.46523 -18.14357 -17.38286 -16.89057 -16.53736 -16.41332 -15.84759 -15.65723 -15.36004 -15.33133 -14.58594 -14.51713 -14.41217 -14.18676 -14.04392 -13.77667 -13.36754 -13.17322 -13.10683 -13.03201 -12.86528 -12.75972 -12.60281 -12.51404 -12.17487 -12.11093 -11.93240 -11.83287 -11.72669 -11.64456 -11.51971 -11.15882 -10.96951 -10.49040 -9.83834 -9.63806 -8.82290 -8.12533 -6.16685 -0.24087 0.55049 1.38237 1.40819 1.52427 1.52800 1.70945 2.42569 2.88255 3.19372 3.38466 3.71489 3.94341 3.95704 4.10233 4.15983 4.30557 4.32397 4.35809 4.39235 4.47928 4.55041 4.57907 4.68933 4.70395 4.79540 4.81197 4.91247 4.95847 5.01771 5.07822 5.17682 5.20279 5.22245 5.28424 5.34590 5.38742 5.40215 5.47375 5.53525 5.75421 5.78084 5.80370 6.02683 6.20604 6.52581 6.66543 6.81600 6.98921 7.49287 8.97493 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011854 B = 0.004341 C = 0.003571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2361.585771 B = 6448.910709 C = 7839.624355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.063 3.937 3 N -0.529 5.529 4 C 0.214 3.786 5 C -0.499 4.499 6 H 0.071 0.929 7 C 0.000 4.000 8 N -0.938 5.938 9 Si 0.951 3.049 10 H -0.265 1.265 11 H -0.284 1.284 12 H -0.281 1.281 13 C 0.081 3.919 14 H 0.064 0.936 15 C -0.175 4.175 16 C -0.073 4.073 17 C -0.024 4.024 18 C -0.134 4.134 19 C -0.060 4.060 20 C -0.159 4.159 21 C 0.511 3.489 22 O -0.543 6.543 23 O -0.356 6.356 24 C 0.028 3.972 25 C -0.068 4.068 26 C -0.111 4.111 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.089 0.911 31 H 0.011 0.989 32 H -0.009 1.009 33 H -0.031 1.031 34 H 0.259 0.741 35 H 0.028 0.972 36 H 0.081 0.919 37 H 0.060 0.940 38 H 0.086 0.914 39 H 0.107 0.893 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.137 0.863 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.124 0.876 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.978 -1.735 18.669 20.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 N -0.253 5.253 4 C 0.088 3.912 5 C -0.537 4.537 6 H 0.089 0.911 7 C -0.197 4.197 8 N -0.580 5.580 9 Si 0.777 3.223 10 H -0.189 1.189 11 H -0.211 1.211 12 H -0.207 1.207 13 C -0.028 4.028 14 H 0.082 0.918 15 C -0.234 4.234 16 C -0.110 4.110 17 C -0.024 4.024 18 C -0.152 4.152 19 C -0.078 4.078 20 C -0.160 4.160 21 C 0.359 3.641 22 O -0.435 6.435 23 O -0.272 6.272 24 C -0.064 4.064 25 C -0.086 4.086 26 C -0.129 4.129 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.029 0.971 32 H 0.009 0.991 33 H -0.014 1.014 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.105 0.895 39 H 0.125 0.875 40 H 0.173 0.827 41 H 0.171 0.829 42 H 0.155 0.845 43 H 0.076 0.924 44 H 0.083 0.917 45 H 0.141 0.859 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 7.360 -1.432 18.966 20.395 hybrid contribution -0.972 0.231 -1.370 1.695 sum 6.389 -1.200 17.596 18.759 Atomic orbital electron populations 1.21965 0.95856 1.00094 1.02467 1.21995 0.95959 0.89114 0.99359 1.62271 1.16205 1.16737 1.30059 1.19302 0.95497 0.91805 0.84595 1.21688 0.95288 1.39173 0.97569 0.91138 1.25752 1.01481 0.96462 0.95977 1.70086 1.36342 1.47643 1.03917 0.85596 0.80854 0.77630 0.78178 1.18941 1.21064 1.20690 1.21753 0.87995 0.99035 0.94012 0.91802 1.22379 1.01495 1.00490 0.99014 1.20881 1.01413 0.98050 0.90630 1.20242 0.93763 0.95075 0.93354 1.21330 1.01670 0.94840 0.97370 1.21558 0.92115 0.98515 0.95568 1.19123 0.96103 0.98562 1.02217 1.21514 0.84622 0.79260 0.78739 1.90792 1.18597 1.72040 1.62114 1.86529 1.44732 1.39670 1.56278 1.23591 0.97702 0.94195 0.90960 1.21246 0.99777 0.92923 0.94664 1.21079 0.94606 1.00548 0.96633 0.92207 0.93070 0.93226 0.89345 0.97099 0.99126 1.01363 0.93180 0.95326 0.89965 0.92140 0.89528 0.87488 0.82710 0.82934 0.84477 0.92359 0.91699 0.85850 0.84996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 8.62 71.98 0.62 -4.71 16 2 C 0.06 2.18 4.07 86.30 0.35 2.54 16 3 N -0.53 -20.54 3.83 -875.53 -3.35 -23.89 16 4 C 0.21 10.93 3.90 85.56 0.33 11.26 16 5 C -0.50 -27.47 6.88 25.60 0.18 -27.30 16 6 H 0.07 3.84 6.06 -2.91 -0.02 3.82 16 7 C 0.00 0.01 5.46 84.66 0.46 0.47 16 8 N -0.94 -56.59 13.29 21.45 0.28 -56.31 16 9 Si 0.95 45.10 29.54 68.60 2.03 47.13 16 10 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 C 0.08 2.48 2.30 44.91 0.10 2.58 16 14 H 0.06 2.14 7.95 -2.38 -0.02 2.12 16 15 C -0.17 -5.01 8.57 71.98 0.62 -4.39 16 16 C -0.07 -1.61 4.67 29.85 0.14 -1.47 16 17 C -0.02 -0.60 4.96 -19.80 -0.10 -0.70 16 18 C -0.13 -2.97 9.68 22.23 0.22 -2.75 16 19 C -0.06 -1.39 9.62 22.54 0.22 -1.17 16 20 C -0.16 -4.50 5.87 -20.10 -0.12 -4.61 16 21 C 0.51 14.96 7.90 70.33 0.56 15.51 16 22 O -0.54 -18.74 16.14 19.94 0.32 -18.41 16 23 O -0.36 -8.38 9.82 -56.16 -0.55 -8.93 16 24 C 0.03 0.47 10.56 113.37 1.20 1.67 16 25 C -0.07 -2.01 9.60 22.54 0.22 -1.80 16 26 C -0.11 -3.11 9.28 22.23 0.21 -2.90 16 27 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.05 2.26 5.63 -2.38 -0.01 2.25 16 29 H 0.05 1.81 7.49 -2.39 -0.02 1.80 16 30 H 0.09 2.41 5.27 -2.39 -0.01 2.39 16 31 H 0.01 0.40 6.93 -2.39 -0.02 0.39 16 32 H -0.01 -0.53 7.81 -2.39 -0.02 -0.55 16 33 H -0.03 -1.76 7.15 -2.39 -0.02 -1.78 16 34 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 35 H 0.03 1.00 7.01 -2.39 -0.02 0.99 16 36 H 0.08 1.80 8.14 -2.39 -0.02 1.79 16 37 H 0.06 1.63 6.78 -2.38 -0.02 1.62 16 38 H 0.09 1.79 5.83 -2.39 -0.01 1.78 16 39 H 0.11 1.71 8.08 -2.38 -0.02 1.69 16 40 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 41 H 0.15 2.83 7.61 -2.91 -0.02 2.81 16 42 H 0.14 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.06 1.04 8.14 -2.38 -0.02 1.02 16 45 H 0.12 3.74 7.65 -2.91 -0.02 3.72 16 46 H 0.13 3.64 6.78 -2.91 -0.02 3.62 16 Total: -1.00 -69.53 366.97 4.89 -64.64 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: 0.97 Total: 13.55 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: 5.19 Total: -17.77 kcal Atomic # 7 Polarization: -77.13 SS G_CDS: -3.07 Total: -80.20 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.23 Total: -27.34 kcal Atomic # 14 Polarization: 45.10 SS G_CDS: 2.03 Total: 47.13 kcal Total: -69.53 4.89 -64.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173728080.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.845 kcal (2) G-P(sol) polarization free energy of solvation -69.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds