Wall clock time and date at job start Tue Mar 31 2020 10:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45206 * 109.47022 * 2 1 4 4 C 1.34224 * 117.00074 * 179.97438 * 3 2 1 5 5 O 1.20834 * 119.99979 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99948 * 180.02562 * 4 3 2 7 7 N 1.46907 * 109.46902 * 180.02562 * 6 4 3 8 8 C 1.46895 * 110.99885 * 66.04483 * 7 6 4 9 9 C 1.50696 * 109.47064 * 199.84079 * 8 7 6 10 10 H 1.08000 * 120.00113 * 355.06077 * 9 8 7 11 11 C 1.37879 * 119.99983 * 175.06369 * 9 8 7 12 12 N 1.31517 * 120.00226 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 120.00104 * 179.97438 * 11 9 8 14 14 H 1.48509 * 109.46787 * 89.99836 * 13 11 9 15 15 H 1.48494 * 109.47359 * 209.99698 * 13 11 9 16 16 H 1.48500 * 109.47225 * 330.00267 * 13 11 9 17 17 C 1.46900 * 110.99657 * 190.00206 * 7 6 4 18 18 C 1.53000 * 109.47022 * 75.67958 * 17 7 6 19 19 C 1.53005 * 109.46904 * 174.88023 * 18 17 7 20 20 C 1.50699 * 109.47081 * 180.02562 * 19 18 17 21 21 C 1.38224 * 120.00144 * 90.00207 * 20 19 18 22 22 C 1.38237 * 120.00348 * 179.97438 * 21 20 19 23 23 C 1.38237 * 119.99542 * 359.97423 * 22 21 20 24 24 C 1.38238 * 120.00133 * 0.28075 * 23 22 21 25 25 C 1.38234 * 119.99712 * 269.97543 * 20 19 18 26 26 H 1.09003 * 109.47019 * 299.99755 * 1 2 3 27 27 H 1.09008 * 109.47472 * 59.99850 * 1 2 3 28 28 H 1.09002 * 109.47147 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47211 * 240.00666 * 2 1 3 30 30 H 1.08995 * 109.47254 * 120.00294 * 2 1 3 31 31 H 1.09000 * 109.46805 * 60.00672 * 6 4 3 32 32 H 1.08995 * 109.47061 * 299.99674 * 6 4 3 33 33 H 1.08997 * 109.47708 * 319.84268 * 8 7 6 34 34 H 1.09001 * 109.46709 * 79.84319 * 8 7 6 35 35 H 0.96993 * 120.00281 * 179.97438 * 12 11 9 36 36 H 1.08996 * 109.46852 * 315.67670 * 17 7 6 37 37 H 1.08996 * 109.46748 * 195.67733 * 17 7 6 38 38 H 1.08993 * 109.47436 * 54.88316 * 18 17 7 39 39 H 1.08997 * 109.46932 * 294.87556 * 18 17 7 40 40 H 1.09004 * 109.47161 * 59.99611 * 19 18 17 41 41 H 1.09001 * 109.46891 * 300.00044 * 19 18 17 42 42 H 1.08003 * 120.00219 * 359.97176 * 21 20 19 43 43 H 1.07992 * 120.00545 * 179.97438 * 22 21 20 44 44 H 1.07999 * 120.00216 * 180.02562 * 23 22 21 45 45 H 1.08002 * 119.99898 * 179.72474 * 24 23 22 46 46 H 1.08007 * 119.99955 * 0.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3446 1.5449 0.0005 5 8 4.0807 0.5867 0.0005 6 6 3.9206 2.9376 0.0012 7 7 5.3876 2.8607 0.0010 8 6 5.8841 2.2777 -1.2525 9 6 7.2870 1.7668 -1.0479 10 1 7.7917 1.9361 -0.1082 11 6 7.9263 1.0833 -2.0604 12 7 7.3116 0.8767 -3.2046 13 14 9.6656 0.4507 -1.8071 14 1 9.6156 -0.9241 -1.2476 15 1 10.3792 0.4295 -3.1092 16 1 10.3845 1.3435 -0.8630 17 6 5.9840 4.1818 0.2398 18 6 5.8523 4.5405 1.7213 19 6 6.5845 5.8559 1.9946 20 6 6.4553 6.2090 3.4539 21 6 7.4001 5.7631 4.3591 22 6 7.2819 6.0874 5.6977 23 6 6.2192 6.8580 6.1309 24 6 5.2715 7.2995 5.2265 25 6 5.3924 6.9792 3.8872 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.5844 3.4693 0.8913 32 1 3.5850 3.4699 -0.8888 33 1 5.2371 1.4529 -1.5511 34 1 5.8849 3.0394 -2.0322 35 1 7.7615 0.3962 -3.9170 36 1 5.4661 4.9283 -0.3622 37 1 7.0381 4.1598 -0.0364 38 1 6.2909 3.7479 2.3275 39 1 4.7983 4.6517 1.9759 40 1 6.1459 6.6486 1.3883 41 1 7.6385 5.7447 1.7399 42 1 8.2306 5.1614 4.0206 43 1 8.0198 5.7388 6.4050 44 1 6.1270 7.1118 7.1766 45 1 4.4388 7.8978 5.5657 46 1 4.6542 7.3275 3.1799 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201672741.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:30 Heat of formation + Delta-G solvation = -86.559510 kcal Electronic energy + Delta-G solvation = -24544.298111 eV Core-core repulsion = 21011.851030 eV Total energy + Delta-G solvation = -3532.447082 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.48125 -40.14126 -38.73154 -37.30754 -35.30261 -34.47574 -32.69772 -31.69210 -31.24697 -30.09964 -27.96710 -26.04914 -24.28173 -23.52056 -23.37918 -22.48346 -21.60747 -21.23066 -18.73875 -18.60960 -17.63409 -17.56079 -17.36373 -16.63559 -16.36901 -16.09621 -15.68746 -15.60948 -15.10836 -15.02949 -14.57842 -14.19889 -14.14840 -14.06305 -13.74185 -13.67321 -13.52597 -13.30357 -12.91784 -12.79920 -12.74399 -12.56290 -12.48336 -12.43808 -12.28770 -12.01202 -11.83044 -11.65496 -11.49466 -11.42707 -11.24765 -11.13222 -10.55075 -9.74864 -9.51389 -9.07051 -8.17245 -6.24547 0.52754 0.57223 1.30634 1.37976 1.41214 1.51055 1.66081 2.41010 2.93242 3.14456 3.27257 3.84491 3.89866 3.98677 4.00208 4.12681 4.15903 4.23470 4.29797 4.32458 4.35118 4.36119 4.47033 4.58940 4.60894 4.72285 4.79664 4.86089 4.91614 4.93349 4.96707 5.11697 5.14522 5.18826 5.23745 5.27798 5.37791 5.48478 5.49850 5.65360 5.66536 5.69143 5.84158 6.08398 6.20909 6.37666 6.50730 6.87527 6.93858 7.42567 8.94170 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.004222 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.447805 B = 6631.102350 C = 9459.961520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 O -0.363 6.363 4 C 0.453 3.547 5 O -0.517 6.517 6 C 0.065 3.935 7 N -0.538 5.538 8 C 0.207 3.793 9 C -0.508 4.508 10 H 0.058 0.942 11 C -0.001 4.001 12 N -0.937 5.937 13 Si 0.965 3.035 14 H -0.281 1.281 15 H -0.279 1.279 16 H -0.261 1.261 17 C 0.067 3.933 18 C -0.092 4.092 19 C -0.075 4.075 20 C -0.087 4.087 21 C -0.137 4.137 22 C -0.129 4.129 23 C -0.136 4.136 24 C -0.125 4.125 25 C -0.128 4.128 26 H 0.075 0.925 27 H 0.068 0.932 28 H 0.099 0.901 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.141 0.859 32 H 0.079 0.921 33 H 0.011 0.989 34 H -0.034 1.034 35 H 0.262 0.738 36 H 0.044 0.956 37 H 0.062 0.938 38 H 0.051 0.949 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.067 0.933 42 H 0.118 0.882 43 H 0.134 0.866 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.234 11.528 14.775 21.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.022 4.022 3 O -0.280 6.280 4 C 0.295 3.705 5 O -0.404 6.404 6 C -0.064 4.064 7 N -0.264 5.264 8 C 0.081 3.919 9 C -0.547 4.547 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.579 5.579 13 Si 0.790 3.210 14 H -0.207 1.207 15 H -0.205 1.205 16 H -0.185 1.185 17 C -0.060 4.060 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.087 4.087 21 C -0.155 4.155 22 C -0.147 4.147 23 C -0.153 4.153 24 C -0.143 4.143 25 C -0.146 4.146 26 H 0.094 0.906 27 H 0.088 0.912 28 H 0.118 0.882 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.159 0.841 32 H 0.096 0.904 33 H 0.029 0.971 34 H -0.017 1.017 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.104 0.896 41 H 0.086 0.914 42 H 0.136 0.864 43 H 0.152 0.848 44 H 0.158 0.842 45 H 0.160 0.840 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.875 10.818 14.983 20.953 hybrid contribution 0.869 -0.574 -1.102 1.517 sum -9.005 10.244 13.881 19.460 Atomic orbital electron populations 1.21793 0.89451 1.04405 1.03940 1.23238 0.97578 0.79620 1.01806 1.86460 1.23785 1.33378 1.84400 1.24171 0.80552 0.93538 0.72216 1.90743 1.60942 1.44160 1.44537 1.21706 0.90018 0.89385 1.05304 1.61740 1.02955 1.23799 1.37897 1.19459 0.95469 0.92439 0.84508 1.21381 0.99376 1.34622 0.99305 0.92407 1.25863 1.02652 0.96432 0.94880 1.70083 1.39376 1.43056 1.05361 0.85449 0.79268 0.78650 0.77639 1.20662 1.20473 1.18492 1.22063 0.99724 0.87400 0.96813 1.21431 1.00851 0.96292 0.94449 1.20539 1.01370 0.97305 0.92065 1.20026 0.95402 0.97513 0.95753 1.21293 0.99637 1.00570 0.94034 1.21406 0.99030 0.98635 0.95648 1.21453 0.94751 0.98409 1.00724 1.21465 0.99619 1.00079 0.93165 1.21316 0.97848 0.98658 0.96744 0.90562 0.91245 0.88212 0.92927 0.91715 0.84146 0.90359 0.97136 1.01685 0.92946 0.93806 0.91926 0.93046 0.91006 0.89602 0.91425 0.86366 0.84797 0.84158 0.83976 0.84658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.50 10.29 71.98 0.74 -1.76 16 2 C 0.05 1.43 6.19 71.98 0.45 1.88 16 3 O -0.36 -11.90 10.22 -51.36 -0.52 -12.42 16 4 C 0.45 18.09 7.47 71.24 0.53 18.62 16 5 O -0.52 -25.97 14.30 21.94 0.31 -25.66 16 6 C 0.06 2.26 5.39 85.56 0.46 2.72 16 7 N -0.54 -23.38 4.09 -905.38 -3.70 -27.08 16 8 C 0.21 11.44 4.23 85.56 0.36 11.80 16 9 C -0.51 -30.29 8.54 25.60 0.22 -30.07 16 10 H 0.06 3.40 7.77 -2.91 -0.02 3.38 16 11 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 12 N -0.94 -59.05 13.29 21.45 0.28 -58.77 16 13 Si 0.97 46.64 29.54 68.60 2.03 48.67 16 14 H -0.28 -13.47 7.11 99.48 0.71 -12.76 16 15 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 16 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 17 C 0.07 2.38 4.80 86.30 0.41 2.80 16 18 C -0.09 -2.60 5.23 30.60 0.16 -2.44 16 19 C -0.07 -1.77 5.34 29.85 0.16 -1.61 16 20 C -0.09 -1.99 5.13 -19.87 -0.10 -2.10 16 21 C -0.14 -3.20 9.70 22.27 0.22 -2.98 16 22 C -0.13 -2.58 10.05 22.27 0.22 -2.36 16 23 C -0.14 -2.38 10.05 22.27 0.22 -2.16 16 24 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 25 C -0.13 -2.52 9.70 22.27 0.22 -2.31 16 26 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.05 1.62 8.13 -2.39 -0.02 1.60 16 30 H 0.06 1.82 8.13 -2.39 -0.02 1.80 16 31 H 0.14 3.77 6.71 -2.39 -0.02 3.76 16 32 H 0.08 2.54 8.12 -2.39 -0.02 2.52 16 33 H 0.01 0.65 5.86 -2.39 -0.01 0.64 16 34 H -0.03 -1.99 8.00 -2.39 -0.02 -2.01 16 35 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 36 H 0.04 1.38 8.00 -2.39 -0.02 1.36 16 37 H 0.06 2.54 7.27 -2.39 -0.02 2.52 16 38 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.07 1.77 6.95 -2.39 -0.02 1.75 16 40 H 0.09 1.74 8.09 -2.38 -0.02 1.72 16 41 H 0.07 1.68 8.08 -2.39 -0.02 1.66 16 42 H 0.12 2.73 8.06 -2.91 -0.02 2.71 16 43 H 0.13 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 45 H 0.14 1.73 8.06 -2.91 -0.02 1.70 16 46 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -76.15 382.65 4.29 -71.87 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: 0.93 Total: 14.92 kcal Atomic # 6 Polarization: -16.49 SS G_CDS: 4.96 Total: -11.53 kcal Atomic # 7 Polarization: -82.43 SS G_CDS: -3.42 Total: -85.85 kcal Atomic # 8 Polarization: -37.87 SS G_CDS: -0.21 Total: -38.08 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.15 4.29 -71.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201672741.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.692 kcal (2) G-P(sol) polarization free energy of solvation -76.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds