Wall clock time and date at job start Tue Mar 31 2020 10:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47212 * 2 1 4 4 C 1.34227 * 117.00227 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99578 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00495 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47529 * 174.27168 * 6 4 3 8 8 C 1.46903 * 110.99587 * 287.83956 * 7 6 4 9 9 C 1.50698 * 109.47041 * 295.44300 * 8 7 6 10 10 H 1.07999 * 120.00541 * 5.34427 * 9 8 7 11 11 C 1.37882 * 119.99942 * 185.34784 * 9 8 7 12 12 N 1.31512 * 119.99883 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00104 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47033 * 59.99724 * 13 11 9 15 15 H 1.48496 * 109.46807 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47078 * 299.99876 * 13 11 9 17 17 C 1.46901 * 110.99839 * 163.88929 * 7 6 4 18 18 C 1.50708 * 109.46641 * 189.99778 * 17 7 6 19 19 C 1.38254 * 119.99999 * 259.99365 * 18 17 7 20 20 C 1.38209 * 119.99945 * 179.97438 * 19 18 17 21 21 C 1.50702 * 119.99705 * 180.02562 * 20 19 18 22 22 C 1.38251 * 120.00044 * 359.97438 * 20 19 18 23 23 C 1.38210 * 120.00174 * 0.27606 * 22 20 19 24 24 C 1.38213 * 119.99779 * 80.02282 * 18 17 7 25 25 C 1.50696 * 120.00119 * 359.97438 * 24 18 17 26 26 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47370 * 300.00377 * 1 2 3 28 28 H 1.09000 * 109.46951 * 60.00408 * 1 2 3 29 29 H 1.08998 * 109.47370 * 239.99623 * 2 1 3 30 30 H 1.09000 * 109.46951 * 119.99592 * 2 1 3 31 31 H 1.09000 * 109.46759 * 54.26763 * 6 4 3 32 32 H 1.09007 * 109.46968 * 294.27574 * 6 4 3 33 33 H 1.08993 * 109.47102 * 55.44185 * 8 7 6 34 34 H 1.09000 * 109.47016 * 175.44615 * 8 7 6 35 35 H 0.96995 * 119.99860 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.47257 * 70.00191 * 17 7 6 37 37 H 1.09005 * 109.46942 * 309.99417 * 17 7 6 38 38 H 1.08000 * 119.99992 * 0.02562 * 19 18 17 39 39 H 1.09003 * 109.47020 * 269.97509 * 21 20 19 40 40 H 1.08997 * 109.47435 * 29.98547 * 21 20 19 41 41 H 1.09008 * 109.46893 * 149.98004 * 21 20 19 42 42 H 1.08004 * 119.99988 * 179.97438 * 22 20 19 43 43 H 1.08000 * 120.00149 * 179.72183 * 23 22 20 44 44 H 1.09000 * 109.46939 * 90.00347 * 25 24 18 45 45 H 1.09007 * 109.47079 * 210.00336 * 25 24 18 46 46 H 1.09004 * 109.47400 * 330.00323 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3813 2.8632 0.1390 8 6 5.7609 2.4679 1.5019 9 6 5.3306 3.5368 2.4732 10 1 4.7503 4.3793 2.1269 11 6 5.6778 3.4393 3.8040 12 7 6.3841 2.4132 4.2258 13 14 5.1438 4.7638 5.0081 14 1 3.6613 4.8451 5.0292 15 1 5.6410 4.4275 6.3664 16 1 5.7053 6.0721 4.5859 17 6 6.0109 4.1368 -0.2345 18 6 7.5045 3.9535 -0.3173 19 6 8.3096 4.3552 0.7324 20 6 9.6792 4.1865 0.6567 21 6 10.5567 4.6239 1.8012 22 6 10.2442 3.6156 -0.4685 23 6 9.4400 3.2187 -1.5201 24 6 8.0695 3.3842 -1.4429 25 6 7.1920 2.9464 -2.5871 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5047 3.5030 0.8337 32 1 3.6697 3.4341 -0.9373 33 1 5.2725 1.5275 1.7568 34 1 6.8423 2.3421 1.5558 35 1 6.6280 2.3444 5.1620 36 1 5.7787 4.8912 0.5172 37 1 5.6302 4.4600 -1.2034 38 1 7.8681 4.8001 1.6120 39 1 10.8597 5.6602 1.6513 40 1 10.0034 4.5387 2.7364 41 1 11.4418 3.9891 1.8437 42 1 11.3146 3.4842 -0.5279 43 1 9.8818 2.7768 -2.4010 44 1 7.0708 3.7719 -3.2885 45 1 7.6545 2.1012 -3.0970 46 1 6.2159 2.6493 -2.2035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203752088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:13 Heat of formation + Delta-G solvation = -67.966057 kcal Electronic energy + Delta-G solvation = -25854.523452 eV Core-core repulsion = 22322.882643 eV Total energy + Delta-G solvation = -3531.640809 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.92380 -39.18652 -36.85095 -35.62262 -33.42197 -32.43514 -31.62728 -30.92962 -28.81158 -27.84973 -26.86104 -24.54392 -24.13056 -23.07301 -21.84994 -21.14444 -20.02063 -19.03182 -17.21819 -16.56790 -16.24382 -15.60429 -15.25269 -15.19328 -14.76256 -14.60831 -14.19850 -14.02345 -13.51738 -13.21287 -13.04666 -12.79746 -12.71585 -12.37316 -12.35854 -12.19567 -12.07743 -11.85130 -11.45182 -11.38539 -11.29518 -11.12979 -11.06377 -10.95567 -10.81104 -10.44761 -10.37912 -10.25046 -10.15596 -9.94610 -9.72849 -9.60102 -8.43649 -8.14853 -7.81510 -7.26695 -6.03625 -4.13885 1.91193 2.01672 2.90143 3.09859 3.24669 3.31086 3.32231 4.26866 4.36786 5.04450 5.05915 5.11963 5.25877 5.28985 5.33623 5.34920 5.42809 5.48778 5.59508 5.70626 5.73349 5.83989 5.87845 5.89217 5.96070 5.99404 6.03348 6.05645 6.09160 6.17827 6.24078 6.35518 6.44727 6.50066 6.71695 6.84392 6.91733 7.01066 7.15305 7.24448 7.35524 7.54757 7.65885 7.91194 7.93926 8.15797 8.24042 8.48282 8.95981 9.51892 11.01153 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.005725 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.243439 B = 4890.023623 C = 7000.097786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.063 3.937 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.487 6.487 6 C 0.066 3.934 7 N -0.521 5.521 8 C 0.186 3.814 9 C -0.556 4.556 10 H 0.056 0.944 11 C 0.071 3.929 12 N -0.882 5.882 13 Si 0.883 3.117 14 H -0.277 1.277 15 H -0.287 1.287 16 H -0.276 1.276 17 C 0.100 3.900 18 C -0.057 4.057 19 C -0.083 4.083 20 C -0.100 4.100 21 C -0.110 4.110 22 C -0.125 4.125 23 C -0.131 4.131 24 C -0.074 4.074 25 C -0.113 4.113 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.087 0.913 32 H 0.094 0.906 33 H 0.033 0.967 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.128 0.872 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.058 0.942 42 H 0.111 0.889 43 H 0.112 0.888 44 H 0.057 0.943 45 H 0.055 0.945 46 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.117 1.917 -10.471 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.287 6.287 4 C 0.307 3.693 5 O -0.371 6.371 6 C -0.063 4.063 7 N -0.245 5.245 8 C 0.061 3.939 9 C -0.595 4.595 10 H 0.074 0.926 11 C -0.133 4.133 12 N -0.520 5.520 13 Si 0.710 3.290 14 H -0.203 1.203 15 H -0.212 1.212 16 H -0.202 1.202 17 C -0.027 4.027 18 C -0.058 4.058 19 C -0.101 4.101 20 C -0.100 4.100 21 C -0.166 4.166 22 C -0.144 4.144 23 C -0.149 4.149 24 C -0.074 4.074 25 C -0.170 4.170 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.086 0.914 31 H 0.105 0.895 32 H 0.112 0.888 33 H 0.051 0.949 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.075 0.925 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.080 0.920 40 H 0.087 0.913 41 H 0.077 0.923 42 H 0.129 0.871 43 H 0.130 0.870 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.661 1.122 -10.624 10.811 hybrid contribution -0.459 0.986 1.535 1.881 sum -2.120 2.108 -9.088 9.568 Atomic orbital electron populations 1.21780 0.93204 1.02467 1.03271 1.22872 0.94806 0.81171 1.02319 1.86480 1.25652 1.31555 1.84995 1.23824 0.79737 0.93313 0.72470 1.90639 1.59992 1.42892 1.43587 1.21440 0.91800 0.89730 1.03336 1.62270 1.03373 1.28169 1.30726 1.19853 0.98020 0.95671 0.80354 1.21651 1.35395 1.08523 0.93948 0.92601 1.24902 0.94812 0.95388 0.98178 1.69951 1.37095 1.29031 1.15893 0.86813 0.79102 0.82410 0.80662 1.20282 1.21218 1.20166 1.20873 0.90293 0.92045 0.99484 1.19535 0.95046 0.97920 0.93248 1.21108 0.92350 0.98652 0.98020 1.19811 0.94353 1.00138 0.95744 1.20726 0.98636 1.00414 0.96868 1.20838 0.98878 1.00674 0.93973 1.20836 0.93267 1.02211 0.98622 1.19670 0.93553 0.98249 0.95939 1.20795 1.00675 0.99955 0.95581 0.90700 0.91551 0.91774 0.91723 0.91442 0.89541 0.88781 0.94886 0.93774 0.92749 0.92501 0.91913 0.85364 0.92020 0.91301 0.92251 0.87126 0.87031 0.92436 0.92561 0.89804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.29 37.16 0.38 -1.16 16 2 C 0.06 0.88 6.19 37.16 0.23 1.11 16 3 O -0.37 -6.29 10.22 -39.25 -0.40 -6.69 16 4 C 0.47 9.12 7.54 36.00 0.27 9.40 16 5 O -0.49 -11.07 14.91 -18.75 -0.28 -11.35 16 6 C 0.07 1.22 5.42 -4.98 -0.03 1.20 16 7 N -0.52 -10.87 3.63 -238.96 -0.87 -11.74 16 8 C 0.19 4.77 4.53 -4.97 -0.02 4.74 16 9 C -0.56 -14.49 7.32 -34.44 -0.25 -14.74 16 10 H 0.06 1.40 5.97 -52.49 -0.31 1.09 16 11 C 0.07 1.92 5.46 -17.82 -0.10 1.83 16 12 N -0.88 -25.57 13.29 55.43 0.74 -24.83 16 13 Si 0.88 20.74 29.54 -169.99 -5.02 15.71 16 14 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 15 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 17 C 0.10 1.86 4.00 -4.97 -0.02 1.84 16 18 C -0.06 -1.08 4.57 -104.62 -0.48 -1.56 16 19 C -0.08 -1.63 8.40 -39.59 -0.33 -1.96 16 20 C -0.10 -1.77 5.88 -104.63 -0.62 -2.39 16 21 C -0.11 -1.66 10.01 36.01 0.36 -1.30 16 22 C -0.13 -2.03 9.70 -39.59 -0.38 -2.41 16 23 C -0.13 -2.11 9.70 -39.58 -0.38 -2.50 16 24 C -0.07 -1.27 5.88 -104.63 -0.62 -1.89 16 25 C -0.11 -1.68 9.26 36.00 0.33 -1.35 16 26 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.87 8.13 -51.93 -0.42 0.45 16 30 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 31 H 0.09 1.68 6.40 -51.93 -0.33 1.35 16 32 H 0.09 1.39 7.81 -51.92 -0.41 0.98 16 33 H 0.03 0.96 6.58 -51.93 -0.34 0.62 16 34 H 0.04 1.26 6.69 -51.93 -0.35 0.91 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.06 1.12 6.22 -51.93 -0.32 0.80 16 37 H 0.06 0.99 7.00 -51.93 -0.36 0.62 16 38 H 0.13 2.73 8.04 -52.49 -0.42 2.30 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.07 1.13 8.09 -51.93 -0.42 0.71 16 41 H 0.06 0.80 8.09 -51.92 -0.42 0.38 16 42 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 43 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 46 H 0.08 1.36 6.35 -51.93 -0.33 1.04 16 LS Contribution 373.78 15.07 5.63 5.63 Total: -1.00 -30.94 373.78 -9.23 -40.17 By element: Atomic # 1 Polarization: 11.61 SS G_CDS: -7.38 Total: 4.23 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -1.65 Total: -11.15 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.13 Total: -36.57 kcal Atomic # 8 Polarization: -17.35 SS G_CDS: -0.68 Total: -18.03 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.71 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.94 -9.23 -40.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203752088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.797 kcal (2) G-P(sol) polarization free energy of solvation -30.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds