Wall clock time and date at job start Tue Mar 31 2020 10:10:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.45201 * 109.47212 * 2 1 4 4 C 1.34227 * 117.00227 * 179.97438 * 3 2 1 5 5 O 1.20831 * 119.99578 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00495 * 179.97438 * 4 3 2 7 7 N 1.46898 * 109.47529 * 174.27168 * 6 4 3 8 8 C 1.46903 * 110.99587 * 287.83956 * 7 6 4 9 9 C 1.50698 * 109.47041 * 295.44300 * 8 7 6 10 10 H 1.07999 * 120.00541 * 5.34427 * 9 8 7 11 11 C 1.37882 * 119.99942 * 185.34784 * 9 8 7 12 12 N 1.31512 * 119.99883 * 359.97438 * 11 9 8 13 13 Si 1.86804 * 120.00104 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47033 * 59.99724 * 13 11 9 15 15 H 1.48496 * 109.46807 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47078 * 299.99876 * 13 11 9 17 17 C 1.46901 * 110.99839 * 163.88929 * 7 6 4 18 18 C 1.50708 * 109.46641 * 189.99778 * 17 7 6 19 19 C 1.38254 * 119.99999 * 259.99365 * 18 17 7 20 20 C 1.38209 * 119.99945 * 179.97438 * 19 18 17 21 21 C 1.50702 * 119.99705 * 180.02562 * 20 19 18 22 22 C 1.38251 * 120.00044 * 359.97438 * 20 19 18 23 23 C 1.38210 * 120.00174 * 0.27606 * 22 20 19 24 24 C 1.38213 * 119.99779 * 80.02282 * 18 17 7 25 25 C 1.50696 * 120.00119 * 359.97438 * 24 18 17 26 26 H 1.09001 * 109.47142 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47370 * 300.00377 * 1 2 3 28 28 H 1.09000 * 109.46951 * 60.00408 * 1 2 3 29 29 H 1.08998 * 109.47370 * 239.99623 * 2 1 3 30 30 H 1.09000 * 109.46951 * 119.99592 * 2 1 3 31 31 H 1.09000 * 109.46759 * 54.26763 * 6 4 3 32 32 H 1.09007 * 109.46968 * 294.27574 * 6 4 3 33 33 H 1.08993 * 109.47102 * 55.44185 * 8 7 6 34 34 H 1.09000 * 109.47016 * 175.44615 * 8 7 6 35 35 H 0.96995 * 119.99860 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.47257 * 70.00191 * 17 7 6 37 37 H 1.09005 * 109.46942 * 309.99417 * 17 7 6 38 38 H 1.08000 * 119.99992 * 0.02562 * 19 18 17 39 39 H 1.09003 * 109.47020 * 269.97509 * 21 20 19 40 40 H 1.08997 * 109.47435 * 29.98547 * 21 20 19 41 41 H 1.09008 * 109.46893 * 149.98004 * 21 20 19 42 42 H 1.08004 * 119.99988 * 179.97438 * 22 20 19 43 43 H 1.08000 * 120.00149 * 179.72183 * 23 22 20 44 44 H 1.09000 * 109.46939 * 90.00347 * 25 24 18 45 45 H 1.09007 * 109.47079 * 210.00336 * 25 24 18 46 46 H 1.09004 * 109.47400 * 330.00323 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9374 0.0000 7 7 5.3813 2.8632 0.1390 8 6 5.7609 2.4679 1.5019 9 6 5.3306 3.5368 2.4732 10 1 4.7503 4.3793 2.1269 11 6 5.6778 3.4393 3.8040 12 7 6.3841 2.4132 4.2258 13 14 5.1438 4.7638 5.0081 14 1 3.6613 4.8451 5.0292 15 1 5.6410 4.4275 6.3664 16 1 5.7053 6.0721 4.5859 17 6 6.0109 4.1368 -0.2345 18 6 7.5045 3.9535 -0.3173 19 6 8.3096 4.3552 0.7324 20 6 9.6792 4.1865 0.6567 21 6 10.5567 4.6239 1.8012 22 6 10.2442 3.6156 -0.4685 23 6 9.4400 3.2187 -1.5201 24 6 8.0695 3.3842 -1.4429 25 6 7.1920 2.9464 -2.5871 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5047 3.5030 0.8337 32 1 3.6697 3.4341 -0.9373 33 1 5.2725 1.5275 1.7568 34 1 6.8423 2.3421 1.5558 35 1 6.6280 2.3444 5.1620 36 1 5.7787 4.8912 0.5172 37 1 5.6302 4.4600 -1.2034 38 1 7.8681 4.8001 1.6120 39 1 10.8597 5.6602 1.6513 40 1 10.0034 4.5387 2.7364 41 1 11.4418 3.9891 1.8437 42 1 11.3146 3.4842 -0.5279 43 1 9.8818 2.7768 -2.4010 44 1 7.0708 3.7719 -3.2885 45 1 7.6545 2.1012 -3.0970 46 1 6.2159 2.6493 -2.2035 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203752088.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:12 Heat of formation + Delta-G solvation = -84.611138 kcal Electronic energy + Delta-G solvation = -25855.245237 eV Core-core repulsion = 22322.882643 eV Total energy + Delta-G solvation = -3532.362594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.44030 -40.55623 -38.40020 -37.19212 -34.90504 -34.32690 -32.77169 -32.25953 -30.07659 -29.60347 -28.49000 -26.21940 -25.48571 -24.38290 -23.29690 -22.56749 -21.54005 -20.53814 -18.85862 -18.37620 -17.68626 -17.17059 -16.74950 -16.51012 -16.45830 -16.20238 -15.64860 -15.47762 -14.92869 -14.63114 -14.52432 -14.12847 -13.93206 -13.79854 -13.56949 -13.49159 -13.39169 -13.20693 -12.97713 -12.85458 -12.71188 -12.63037 -12.58511 -12.46101 -12.35302 -12.19418 -12.05466 -11.73736 -11.65587 -11.49836 -11.46093 -11.24225 -10.57160 -9.54559 -9.15226 -9.00289 -8.12053 -6.31583 0.57110 0.65038 1.35264 1.36585 1.37326 1.44769 1.74024 2.36930 2.90123 3.13506 3.50440 3.92447 4.01427 4.02874 4.05369 4.14516 4.16612 4.31144 4.33589 4.37033 4.46533 4.51144 4.61166 4.73568 4.76575 4.82956 4.87147 4.89630 4.94452 4.97293 5.02699 5.05410 5.16072 5.25095 5.25624 5.37351 5.40239 5.53540 5.56121 5.68698 5.79824 5.85295 5.89886 6.05952 6.20609 6.31227 6.41066 6.87911 6.96057 7.39020 8.90739 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010344 B = 0.005725 C = 0.003999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.243439 B = 4890.023623 C = 7000.097786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.052 3.948 3 O -0.365 6.365 4 C 0.465 3.535 5 O -0.526 6.526 6 C 0.065 3.935 7 N -0.523 5.523 8 C 0.213 3.787 9 C -0.552 4.552 10 H 0.066 0.934 11 C 0.017 3.983 12 N -0.924 5.924 13 Si 0.949 3.051 14 H -0.268 1.268 15 H -0.288 1.288 16 H -0.266 1.266 17 C 0.105 3.895 18 C -0.079 4.079 19 C -0.110 4.110 20 C -0.116 4.116 21 C -0.106 4.106 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.084 4.084 25 C -0.109 4.109 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.076 0.924 29 H 0.070 0.930 30 H 0.051 0.949 31 H 0.079 0.921 32 H 0.141 0.859 33 H -0.010 1.010 34 H 0.007 0.993 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.082 0.918 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.142 0.858 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.068 0.932 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.620 2.985 -12.459 13.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.021 4.021 3 O -0.283 6.283 4 C 0.309 3.691 5 O -0.414 6.414 6 C -0.064 4.064 7 N -0.247 5.247 8 C 0.087 3.913 9 C -0.591 4.591 10 H 0.084 0.916 11 C -0.183 4.183 12 N -0.563 5.563 13 Si 0.774 3.226 14 H -0.193 1.193 15 H -0.214 1.214 16 H -0.190 1.190 17 C -0.021 4.021 18 C -0.079 4.079 19 C -0.129 4.129 20 C -0.116 4.116 21 C -0.163 4.163 22 C -0.143 4.143 23 C -0.149 4.149 24 C -0.084 4.084 25 C -0.165 4.165 26 H 0.119 0.881 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.158 0.842 33 H 0.008 0.992 34 H 0.025 0.975 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.101 0.899 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.160 0.840 43 H 0.161 0.839 44 H 0.102 0.898 45 H 0.087 0.913 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.201 2.215 -12.633 13.013 hybrid contribution -0.308 0.597 2.077 2.183 sum -2.509 2.812 -10.556 11.209 Atomic orbital electron populations 1.21798 0.89813 1.04376 1.03780 1.23229 0.97408 0.79616 1.01882 1.86474 1.24056 1.33437 1.84291 1.24068 0.80362 0.93287 0.71417 1.90623 1.61074 1.44116 1.45603 1.21592 0.89992 0.89517 1.05318 1.62097 1.05226 1.29854 1.27488 1.19264 0.95064 0.93837 0.83161 1.21896 1.34558 1.08496 0.94105 0.91560 1.25739 0.94877 0.97432 1.00216 1.70106 1.38816 1.31275 1.16142 0.85754 0.78954 0.79895 0.78032 1.19348 1.21375 1.19043 1.20914 0.90498 0.90197 1.00531 1.19675 0.95129 0.99101 0.94030 1.21028 0.93788 1.00520 0.97588 1.20131 0.93869 1.00352 0.97231 1.20729 0.98520 1.02135 0.94884 1.21207 1.00569 0.99408 0.93157 1.21256 0.92867 1.01223 0.99583 1.20017 0.94721 0.97693 0.96016 1.20789 0.99271 1.01341 0.95100 0.88084 0.91743 0.90501 0.91114 0.93093 0.90301 0.84171 0.99211 0.97487 0.92945 0.94220 0.88367 0.88526 0.89919 0.93690 0.90350 0.84043 0.83876 0.89786 0.91314 0.91449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 10.29 71.98 0.74 -1.87 16 2 C 0.05 1.45 6.19 71.98 0.45 1.89 16 3 O -0.37 -12.28 10.22 -51.38 -0.53 -12.80 16 4 C 0.47 18.42 7.54 71.23 0.54 18.95 16 5 O -0.53 -24.75 14.91 21.95 0.33 -24.42 16 6 C 0.06 2.36 5.42 85.56 0.46 2.82 16 7 N -0.52 -22.19 3.63 -909.93 -3.31 -25.50 16 8 C 0.21 11.49 4.53 85.56 0.39 11.87 16 9 C -0.55 -29.73 7.32 25.60 0.19 -29.54 16 10 H 0.07 3.37 5.97 -2.91 -0.02 3.35 16 11 C 0.02 0.96 5.46 84.66 0.46 1.42 16 12 N -0.92 -56.04 13.29 21.45 0.28 -55.75 16 13 Si 0.95 43.44 29.54 68.60 2.03 45.47 16 14 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 15 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 16 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 17 C 0.11 3.91 4.00 85.56 0.34 4.25 16 18 C -0.08 -3.03 4.57 -19.86 -0.09 -3.12 16 19 C -0.11 -4.54 8.40 22.27 0.19 -4.35 16 20 C -0.12 -4.11 5.88 -19.87 -0.12 -4.23 16 21 C -0.11 -3.21 10.01 71.24 0.71 -2.49 16 22 C -0.13 -3.83 9.70 22.27 0.22 -3.62 16 23 C -0.13 -3.94 9.70 22.27 0.22 -3.72 16 24 C -0.08 -2.79 5.88 -19.87 -0.12 -2.91 16 25 C -0.11 -2.96 9.26 71.23 0.66 -2.30 16 26 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.86 8.13 -2.39 -0.02 1.84 16 30 H 0.05 1.57 8.13 -2.39 -0.02 1.55 16 31 H 0.08 3.04 6.40 -2.39 -0.02 3.02 16 32 H 0.14 3.78 7.81 -2.38 -0.02 3.76 16 33 H -0.01 -0.64 6.58 -2.39 -0.02 -0.65 16 34 H 0.01 0.42 6.69 -2.39 -0.02 0.41 16 35 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 36 H 0.04 1.60 6.22 -2.39 -0.01 1.58 16 37 H 0.10 2.90 7.00 -2.38 -0.02 2.88 16 38 H 0.10 4.45 8.04 -2.91 -0.02 4.43 16 39 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 40 H 0.04 1.54 8.09 -2.39 -0.02 1.52 16 41 H 0.08 2.03 8.09 -2.38 -0.02 2.01 16 42 H 0.14 3.38 8.06 -2.91 -0.02 3.36 16 43 H 0.14 3.33 8.06 -2.91 -0.02 3.31 16 44 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 45 H 0.07 1.69 8.09 -2.38 -0.02 1.67 16 46 H 0.07 2.07 6.35 -2.38 -0.02 2.05 16 Total: -1.00 -71.37 373.78 5.00 -66.37 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.96 Total: 23.58 kcal Atomic # 6 Polarization: -22.18 SS G_CDS: 5.23 Total: -16.94 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -3.02 Total: -81.25 kcal Atomic # 8 Polarization: -37.03 SS G_CDS: -0.20 Total: -37.22 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.47 kcal Total: -71.37 5.00 -66.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203752088.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.239 kcal (2) G-P(sol) polarization free energy of solvation -71.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.372 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds