Wall clock time and date at job start Tue Mar 31 2020 10:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45198 * 109.47365 * 2 1 4 4 C 1.34230 * 117.00113 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00064 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00037 * 179.97438 * 4 3 2 7 7 N 1.46897 * 109.47610 * 180.02562 * 6 4 3 8 8 C 1.46902 * 110.99878 * 66.04506 * 7 6 4 9 9 C 1.50703 * 109.46792 * 62.85642 * 8 7 6 10 10 H 1.07997 * 120.00399 * 3.38898 * 9 8 7 11 11 C 1.37882 * 119.99758 * 183.38045 * 9 8 7 12 12 N 1.31508 * 120.00072 * 354.66478 * 11 9 8 13 13 Si 1.86803 * 119.99739 * 174.66250 * 11 9 8 14 14 H 1.48496 * 109.47273 * 94.98643 * 13 11 9 15 15 H 1.48503 * 109.46943 * 214.98681 * 13 11 9 16 16 H 1.48504 * 109.47088 * 334.98706 * 13 11 9 17 17 C 1.46890 * 111.00681 * 190.00238 * 7 6 4 18 18 C 1.50699 * 109.47744 * 163.97787 * 17 7 6 19 19 C 1.38229 * 120.00275 * 275.48679 * 18 17 7 20 20 C 1.38233 * 120.00355 * 179.75939 * 19 18 17 21 21 C 1.50698 * 120.00417 * 180.25090 * 20 19 18 22 22 C 1.38237 * 119.99749 * 0.48712 * 20 19 18 23 23 C 1.38238 * 119.99872 * 359.78855 * 22 20 19 24 24 C 1.50697 * 119.99912 * 179.97438 * 23 22 20 25 25 C 1.38237 * 119.99631 * 95.75013 * 18 17 7 26 26 H 1.09002 * 109.47192 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.46988 * 299.99881 * 1 2 3 28 28 H 1.08998 * 109.46836 * 60.00225 * 1 2 3 29 29 H 1.08999 * 109.47431 * 239.99544 * 2 1 3 30 30 H 1.09005 * 109.47196 * 119.99955 * 2 1 3 31 31 H 1.09001 * 109.47480 * 300.00792 * 6 4 3 32 32 H 1.09004 * 109.47230 * 60.00381 * 6 4 3 33 33 H 1.09002 * 109.47491 * 182.85805 * 8 7 6 34 34 H 1.08997 * 109.47154 * 302.86342 * 8 7 6 35 35 H 0.97003 * 119.99668 * 179.97438 * 12 11 9 36 36 H 1.09005 * 109.47474 * 283.97888 * 17 7 6 37 37 H 1.09006 * 109.47219 * 43.97993 * 17 7 6 38 38 H 1.08003 * 119.99828 * 359.97438 * 19 18 17 39 39 H 1.08998 * 109.46926 * 270.23637 * 21 20 19 40 40 H 1.08998 * 109.47008 * 30.23852 * 21 20 19 41 41 H 1.09003 * 109.47336 * 150.23646 * 21 20 19 42 42 H 1.08001 * 120.00152 * 179.76784 * 22 20 19 43 43 H 1.09001 * 109.47125 * 269.97303 * 24 23 22 44 44 H 1.08999 * 109.47849 * 29.97453 * 24 23 22 45 45 H 1.09006 * 109.47423 * 149.98051 * 24 23 22 46 46 H 1.07998 * 120.00158 * 0.02562 * 25 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0807 0.5866 0.0005 6 6 3.9208 2.9373 0.0000 7 7 5.3877 2.8605 0.0001 8 6 5.8844 2.2764 -1.2529 9 6 5.5054 3.1677 -2.4075 10 1 4.9992 4.1038 -2.2236 11 6 5.8050 2.7881 -3.6987 12 7 6.5130 1.7016 -3.9172 13 14 5.2053 3.8172 -5.1377 14 1 6.2718 4.7663 -5.5461 15 1 4.8720 2.9265 -6.2783 16 1 3.9951 4.5768 -4.7327 17 6 5.9842 4.1817 0.2378 18 6 7.4325 4.0176 0.6206 19 6 7.7754 3.7626 1.9352 20 6 9.1035 3.6072 2.2854 21 6 9.4770 3.3236 3.7176 22 6 10.0896 3.7169 1.3228 23 6 9.7471 3.9775 0.0091 24 6 10.8220 4.0976 -1.0402 25 6 8.4185 4.1276 -0.3421 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 3.5852 3.4690 -0.8904 32 1 3.5845 3.4700 0.8896 33 1 6.9695 2.1843 -1.2059 34 1 5.4419 1.2904 -1.3947 35 1 6.7235 1.4344 -4.8256 36 1 5.9140 4.7807 -0.6702 37 1 5.4494 4.6818 1.0453 38 1 7.0053 3.6814 2.6880 39 1 9.6331 4.2644 4.2455 40 1 8.6736 2.7659 4.1989 41 1 10.3943 2.7355 3.7443 42 1 11.1275 3.5992 1.5971 43 1 11.1468 5.1357 -1.1105 44 1 11.6695 3.4696 -0.7658 45 1 10.4272 3.7745 -2.0035 46 1 8.1509 4.3315 -1.3683 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204523582.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:22 Heat of formation + Delta-G solvation = -69.423740 kcal Electronic energy + Delta-G solvation = -25470.039017 eV Core-core repulsion = 21938.334998 eV Total energy + Delta-G solvation = -3531.704019 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.90170 -39.14978 -36.92260 -35.57977 -33.08866 -32.63780 -31.94192 -31.44559 -28.01397 -27.36724 -26.51769 -26.15271 -24.37828 -23.05445 -21.67042 -20.25479 -20.21009 -19.35388 -17.16356 -16.57880 -16.20675 -15.72321 -15.53565 -15.20619 -14.71460 -14.55582 -14.08101 -13.89502 -13.59222 -13.37005 -13.04648 -12.92574 -12.70919 -12.47369 -12.33745 -12.30872 -12.19509 -11.94742 -11.68365 -11.37491 -11.22620 -11.13268 -11.07733 -10.91588 -10.79442 -10.54726 -10.41421 -10.36046 -10.11173 -9.98028 -9.76760 -9.38502 -8.40023 -8.09957 -7.99302 -7.25903 -6.02929 -4.12236 1.88307 1.92310 2.94857 3.12207 3.24220 3.32588 3.34154 4.21448 4.37950 5.06541 5.08372 5.13691 5.16589 5.21152 5.26780 5.30994 5.42021 5.45949 5.59628 5.65016 5.72753 5.76804 5.81699 5.87003 5.90090 5.90379 5.94765 6.04791 6.07080 6.09325 6.14953 6.20489 6.24752 6.43816 6.67033 6.73324 6.94744 7.01197 7.11513 7.22094 7.30066 7.57935 7.60101 7.92770 7.96748 8.20450 8.26913 8.52686 8.98449 9.53234 11.01912 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.005293 C = 0.003738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.376424 B = 5288.646146 C = 7489.145473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.369 6.369 4 C 0.465 3.535 5 O -0.483 6.483 6 C 0.070 3.930 7 N -0.523 5.523 8 C 0.177 3.823 9 C -0.557 4.557 10 H 0.056 0.944 11 C 0.070 3.930 12 N -0.882 5.882 13 Si 0.882 3.118 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 C 0.096 3.904 18 C -0.051 4.051 19 C -0.108 4.108 20 C -0.098 4.098 21 C -0.107 4.107 22 C -0.129 4.129 23 C -0.090 4.090 24 C -0.111 4.111 25 C -0.096 4.096 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.038 0.962 34 H 0.051 0.949 35 H 0.262 0.738 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.115 0.885 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.069 0.931 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 3.423 10.779 11.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.307 3.693 5 O -0.368 6.368 6 C -0.059 4.059 7 N -0.248 5.248 8 C 0.052 3.948 9 C -0.596 4.596 10 H 0.074 0.926 11 C -0.134 4.134 12 N -0.519 5.519 13 Si 0.710 3.290 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 C -0.032 4.032 18 C -0.052 4.052 19 C -0.126 4.126 20 C -0.098 4.098 21 C -0.164 4.164 22 C -0.148 4.148 23 C -0.090 4.090 24 C -0.168 4.168 25 C -0.114 4.114 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.056 0.944 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.080 0.920 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.079 0.921 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.088 0.912 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.289 2.648 11.020 11.406 hybrid contribution -0.518 0.720 -1.741 1.954 sum -1.807 3.367 9.279 10.035 Atomic orbital electron populations 1.21779 0.93228 1.02457 1.03226 1.22871 0.94758 0.81186 1.02370 1.86469 1.25642 1.31561 1.85088 1.23733 0.79737 0.93268 0.72586 1.90636 1.59797 1.42973 1.43370 1.21402 0.91427 0.89795 1.03252 1.62324 1.01844 1.20737 1.39919 1.20017 0.96988 0.95790 0.81974 1.21721 1.39475 1.06062 0.92353 0.92567 1.24914 0.94740 0.95012 0.98712 1.69977 1.37109 1.23949 1.20904 0.86740 0.79245 0.80282 0.82737 1.20673 1.21126 1.19873 1.20931 0.90796 0.91308 1.00128 1.19696 0.95098 0.97548 0.92818 1.20787 0.94988 1.00848 0.96009 1.19740 0.93506 1.01135 0.95452 1.20705 1.01593 1.01159 0.92957 1.20737 0.98254 1.03199 0.92563 1.19834 0.94751 1.00104 0.94352 1.20746 0.96737 1.01366 0.97946 1.21139 0.91524 0.98903 0.99853 0.90706 0.91786 0.91586 0.91414 0.91714 0.89701 0.88893 0.94386 0.93115 0.92845 0.92093 0.91973 0.86725 0.91890 0.91865 0.92126 0.87085 0.91848 0.92177 0.91191 0.85300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.44 10.22 -39.26 -0.40 -6.85 16 4 C 0.47 9.42 7.66 36.00 0.28 9.70 16 5 O -0.48 -11.42 14.07 -18.74 -0.26 -11.69 16 6 C 0.07 1.33 5.37 -4.98 -0.03 1.31 16 7 N -0.52 -11.19 4.39 -238.97 -1.05 -12.24 16 8 C 0.18 4.60 4.57 -4.97 -0.02 4.58 16 9 C -0.56 -14.75 7.33 -34.44 -0.25 -15.00 16 10 H 0.06 1.43 5.95 -52.49 -0.31 1.12 16 11 C 0.07 1.92 5.45 -17.82 -0.10 1.83 16 12 N -0.88 -25.88 13.29 55.43 0.74 -25.14 16 13 Si 0.88 20.96 29.54 -169.99 -5.02 15.94 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 16 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 17 C 0.10 1.79 4.94 -4.98 -0.02 1.77 16 18 C -0.05 -0.95 4.90 -104.63 -0.51 -1.47 16 19 C -0.11 -1.81 9.38 -39.59 -0.37 -2.18 16 20 C -0.10 -1.52 5.88 -104.62 -0.62 -2.13 16 21 C -0.11 -1.27 10.01 36.00 0.36 -0.91 16 22 C -0.13 -2.02 9.36 -39.58 -0.37 -2.39 16 23 C -0.09 -1.54 5.88 -104.62 -0.62 -2.16 16 24 C -0.11 -1.62 10.01 36.00 0.36 -1.26 16 25 C -0.10 -1.84 8.15 -39.58 -0.32 -2.17 16 26 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 30 H 0.06 0.90 8.13 -51.93 -0.42 0.48 16 31 H 0.09 1.67 6.55 -51.93 -0.34 1.33 16 32 H 0.09 1.41 7.86 -51.93 -0.41 1.00 16 33 H 0.04 1.08 6.59 -51.93 -0.34 0.74 16 34 H 0.05 1.50 5.84 -51.93 -0.30 1.20 16 35 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.06 1.22 6.09 -51.93 -0.32 0.90 16 37 H 0.06 0.98 7.79 -51.93 -0.40 0.57 16 38 H 0.11 1.75 8.06 -52.48 -0.42 1.33 16 39 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 41 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.04 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 45 H 0.07 1.10 8.09 -51.93 -0.42 0.68 16 46 H 0.13 2.70 8.06 -52.49 -0.42 2.28 16 LS Contribution 376.71 15.07 5.68 5.68 Total: -1.00 -31.58 376.71 -9.41 -40.99 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -7.47 Total: 3.85 kcal Atomic # 6 Polarization: -8.92 SS G_CDS: -1.62 Total: -10.55 kcal Atomic # 7 Polarization: -37.07 SS G_CDS: -0.31 Total: -37.38 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.67 Total: -18.53 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.58 -9.41 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204523582.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.430 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds