Wall clock time and date at job start Tue Mar 31 2020 10:10:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47062 * 2 1 4 4 C 1.34228 * 116.99913 * 179.97438 * 3 2 1 5 5 O 1.20828 * 119.99916 * 0.02562 * 4 3 2 6 6 C 1.50696 * 120.00201 * 180.02562 * 4 3 2 7 7 N 1.46899 * 109.47396 * 180.02562 * 6 4 3 8 8 C 1.46900 * 110.99786 * 66.04222 * 7 6 4 9 9 C 1.50707 * 109.47130 * 62.53632 * 8 7 6 10 10 H 1.07996 * 119.99700 * 5.12894 * 9 8 7 11 11 C 1.37872 * 119.99696 * 185.13577 * 9 8 7 12 12 N 1.31517 * 120.00276 * 359.97438 * 11 9 8 13 13 Si 1.86806 * 119.99634 * 179.97438 * 11 9 8 14 14 H 1.48493 * 109.47179 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.46875 * 120.00239 * 13 11 9 16 16 H 1.48503 * 109.47245 * 239.99665 * 13 11 9 17 17 C 1.46896 * 111.00200 * 189.99636 * 7 6 4 18 18 C 1.53004 * 109.47457 * 164.03974 * 17 7 6 19 19 H 1.09001 * 109.46820 * 56.75438 * 18 17 7 20 20 C 1.52995 * 109.47228 * 296.75699 * 18 17 7 21 21 C 1.50702 * 109.47380 * 176.75253 * 18 17 7 22 22 C 1.38231 * 119.99922 * 59.72608 * 21 18 17 23 23 C 1.38235 * 119.99991 * 179.81119 * 22 21 18 24 24 C 1.38229 * 119.99881 * 0.39738 * 23 22 21 25 25 C 1.38239 * 120.00055 * 359.85630 * 24 23 22 26 26 C 1.38233 * 120.00046 * 359.95896 * 25 24 23 27 27 H 1.08999 * 109.47148 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47151 * 299.99764 * 1 2 3 29 29 H 1.09000 * 109.47027 * 60.00334 * 1 2 3 30 30 H 1.08996 * 109.47099 * 239.99842 * 2 1 3 31 31 H 1.09001 * 109.46937 * 120.00212 * 2 1 3 32 32 H 1.09000 * 109.47111 * 59.99889 * 6 4 3 33 33 H 1.09002 * 109.46946 * 299.99745 * 6 4 3 34 34 H 1.09008 * 109.46627 * 182.52889 * 8 7 6 35 35 H 1.08991 * 109.47732 * 302.52953 * 8 7 6 36 36 H 0.97005 * 119.99723 * 180.02562 * 12 11 9 37 37 H 1.08996 * 109.47353 * 284.04346 * 17 7 6 38 38 H 1.09000 * 109.46980 * 44.04340 * 17 7 6 39 39 H 1.09006 * 109.47584 * 59.99285 * 20 18 17 40 40 H 1.08997 * 109.47551 * 179.97438 * 20 18 17 41 41 H 1.09001 * 109.47006 * 299.99624 * 20 18 17 42 42 H 1.08004 * 119.99885 * 0.02562 * 22 21 18 43 43 H 1.08001 * 119.99832 * 180.23493 * 23 22 21 44 44 H 1.08004 * 120.00304 * 179.83738 * 24 23 22 45 45 H 1.08008 * 119.99986 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.00383 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 0.0005 5 8 4.0808 0.5866 0.0005 6 6 3.9208 2.9373 0.0012 7 7 5.3878 2.8605 0.0010 8 6 5.8842 2.2774 -1.2525 9 6 5.4983 3.1657 -2.4072 10 1 5.0134 4.1126 -2.2214 11 6 5.7643 2.7693 -3.7007 12 7 6.3552 1.6163 -3.9269 13 14 5.2853 3.8700 -5.1320 14 1 4.6399 5.1029 -4.6139 15 1 6.5003 4.2348 -5.9040 16 1 4.3357 3.1475 -6.0159 17 6 5.9842 4.1815 0.2397 18 6 7.4551 4.0147 0.6265 19 1 7.9767 3.4648 -0.1568 20 6 7.5517 3.2416 1.9432 21 6 8.0877 5.3723 0.7936 22 6 7.5890 6.2565 1.7318 23 6 8.1717 7.5003 1.8878 24 6 9.2479 7.8630 1.0998 25 6 9.7433 6.9808 0.1578 26 6 9.1630 5.7356 0.0045 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5139 0.8900 32 1 3.5845 3.4692 0.8912 33 1 3.5852 3.4697 -0.8888 34 1 6.9699 2.1907 -1.2079 35 1 5.4463 1.2891 -1.3922 36 1 6.5426 1.3377 -4.8369 37 1 5.9129 4.7816 -0.6674 38 1 5.4502 4.6805 1.0484 39 1 7.0941 2.2596 1.8224 40 1 8.5995 3.1223 2.2186 41 1 7.0301 3.7915 2.7266 42 1 6.7462 5.9742 2.3455 43 1 7.7844 8.1896 2.6235 44 1 9.7015 8.8358 1.2197 45 1 10.5839 7.2644 -0.4582 46 1 9.5497 5.0465 -0.7316 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207911483.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:10:31 Heat of formation + Delta-G solvation = -65.041284 kcal Electronic energy + Delta-G solvation = -25438.043713 eV Core-core repulsion = 21906.529732 eV Total energy + Delta-G solvation = -3531.513981 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.89080 -39.25407 -37.20238 -35.77626 -33.76983 -32.36801 -31.52520 -30.68527 -29.18287 -27.92357 -26.67814 -24.62572 -23.22267 -22.90781 -22.22968 -21.30931 -19.99289 -19.05509 -17.13843 -16.73834 -16.46632 -16.19290 -15.44788 -15.27390 -14.85282 -14.67428 -14.27953 -14.06412 -13.63884 -13.40847 -13.22569 -12.96008 -12.75761 -12.64204 -12.57362 -12.28163 -11.92587 -11.73454 -11.50615 -11.38011 -11.14780 -11.08658 -10.97198 -10.88338 -10.67984 -10.47633 -10.31554 -10.10312 -10.06884 -9.92237 -9.66939 -9.36917 -8.69659 -8.43307 -8.38138 -7.25583 -6.02796 -4.12196 1.60507 1.62694 2.95914 3.12545 3.24885 3.33479 3.35861 4.02644 4.39057 4.84582 5.07308 5.08962 5.12606 5.14767 5.25026 5.27628 5.32497 5.40240 5.46915 5.52079 5.72663 5.75933 5.79468 5.86051 5.87934 5.91143 5.96178 6.05672 6.13538 6.20269 6.24351 6.32115 6.43531 6.63108 6.65388 6.71307 6.71814 6.85561 6.96359 7.06383 7.21705 7.25655 7.58930 7.90868 7.95519 8.20346 8.27841 8.53505 8.98716 9.53957 11.02170 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010897 B = 0.004651 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.885449 B = 6019.094377 C = 7761.527681 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.466 3.534 5 O -0.484 6.484 6 C 0.072 3.928 7 N -0.526 5.526 8 C 0.176 3.824 9 C -0.555 4.555 10 H 0.057 0.943 11 C 0.068 3.932 12 N -0.885 5.885 13 Si 0.884 3.116 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.284 1.284 17 C 0.072 3.928 18 C -0.048 4.048 19 H 0.087 0.913 20 C -0.130 4.130 21 C -0.059 4.059 22 C -0.117 4.117 23 C -0.124 4.124 24 C -0.135 4.135 25 C -0.121 4.121 26 C -0.113 4.113 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.031 0.969 35 H 0.056 0.944 36 H 0.261 0.739 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.073 0.927 40 H 0.041 0.959 41 H 0.045 0.955 42 H 0.120 0.880 43 H 0.116 0.884 44 H 0.114 0.886 45 H 0.117 0.883 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.721 5.974 11.056 12.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.307 3.693 5 O -0.369 6.369 6 C -0.058 4.058 7 N -0.251 5.251 8 C 0.051 3.949 9 C -0.594 4.594 10 H 0.075 0.925 11 C -0.135 4.135 12 N -0.523 5.523 13 Si 0.712 3.288 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.210 1.210 17 C -0.056 4.056 18 C -0.067 4.067 19 H 0.105 0.895 20 C -0.187 4.187 21 C -0.060 4.060 22 C -0.135 4.135 23 C -0.142 4.142 24 C -0.153 4.153 25 C -0.139 4.139 26 C -0.131 4.131 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.102 0.898 34 H 0.049 0.951 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.092 0.908 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.137 0.863 43 H 0.134 0.866 44 H 0.132 0.868 45 H 0.135 0.865 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -2.308 5.196 11.302 12.651 hybrid contribution -0.402 0.988 -1.773 2.069 sum -2.710 6.184 9.529 11.678 Atomic orbital electron populations 1.21780 0.93260 1.02446 1.03216 1.22868 0.94742 0.81197 1.02364 1.86470 1.25688 1.31548 1.85073 1.23749 0.79724 0.93276 0.72519 1.90629 1.59797 1.42971 1.43457 1.21380 0.91519 0.89705 1.03168 1.62263 1.01947 1.21484 1.39395 1.20021 0.96350 0.96253 0.82258 1.21772 1.40352 1.05036 0.92213 0.92520 1.24923 0.94938 0.94881 0.98771 1.69973 1.41462 1.20228 1.20655 0.86670 0.78357 0.80887 0.82920 1.19790 1.20908 1.20989 1.21949 0.93151 0.90764 0.99710 1.20132 0.96023 0.91433 0.99094 0.89478 1.21697 1.00214 1.01319 0.95490 1.20042 0.95019 0.96120 0.94773 1.21013 1.00021 0.93730 0.98689 1.21068 0.96780 0.96627 0.99724 1.21039 0.97648 0.99388 0.97190 1.21112 1.00070 0.94245 0.98505 1.21193 0.96259 0.96598 0.99095 0.90716 0.91796 0.91600 0.91399 0.91719 0.89000 0.89792 0.95058 0.92643 0.92887 0.92920 0.92858 0.90774 0.93987 0.93626 0.86251 0.86630 0.86755 0.86508 0.85914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 10.29 37.16 0.38 -1.20 16 2 C 0.06 0.90 6.19 37.16 0.23 1.13 16 3 O -0.37 -6.43 10.22 -39.25 -0.40 -6.83 16 4 C 0.47 9.34 7.66 36.00 0.28 9.61 16 5 O -0.48 -11.21 14.07 -18.75 -0.26 -11.48 16 6 C 0.07 1.35 5.37 -4.98 -0.03 1.32 16 7 N -0.53 -10.86 3.78 -237.52 -0.90 -11.76 16 8 C 0.18 4.49 4.62 -4.97 -0.02 4.47 16 9 C -0.55 -14.84 7.33 -34.44 -0.25 -15.09 16 10 H 0.06 1.48 5.95 -52.49 -0.31 1.17 16 11 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 12 N -0.88 -26.11 13.29 55.43 0.74 -25.37 16 13 Si 0.88 21.30 29.54 -169.99 -5.02 16.28 16 14 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 16 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 17 C 0.07 1.31 3.97 -3.82 -0.02 1.30 16 18 C -0.05 -0.82 2.56 -91.77 -0.23 -1.05 16 19 H 0.09 1.71 6.36 -51.93 -0.33 1.38 16 20 C -0.13 -2.01 8.88 37.15 0.33 -1.68 16 21 C -0.06 -0.91 4.78 -104.62 -0.50 -1.41 16 22 C -0.12 -1.60 8.75 -39.58 -0.35 -1.94 16 23 C -0.12 -1.53 10.05 -39.59 -0.40 -1.93 16 24 C -0.13 -1.65 10.05 -39.58 -0.40 -2.05 16 25 C -0.12 -1.61 10.05 -39.58 -0.40 -2.01 16 26 C -0.11 -1.72 9.67 -39.58 -0.38 -2.11 16 27 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 1.05 8.13 -51.93 -0.42 0.63 16 31 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 32 H 0.09 1.40 7.86 -51.93 -0.41 1.00 16 33 H 0.08 1.68 6.57 -51.93 -0.34 1.34 16 34 H 0.03 0.85 6.59 -51.92 -0.34 0.51 16 35 H 0.06 1.60 5.85 -51.93 -0.30 1.30 16 36 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 37 H 0.05 1.08 6.18 -51.93 -0.32 0.76 16 38 H 0.05 0.84 7.16 -51.93 -0.37 0.47 16 39 H 0.07 1.28 7.70 -51.93 -0.40 0.88 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.04 0.63 7.40 -51.93 -0.38 0.24 16 42 H 0.12 1.48 7.14 -52.48 -0.37 1.10 16 43 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 44 H 0.11 1.12 8.06 -52.48 -0.42 0.69 16 45 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 46 H 0.12 1.86 7.95 -52.49 -0.42 1.44 16 LS Contribution 371.92 15.07 5.60 5.60 Total: -1.00 -31.13 371.92 -9.34 -40.47 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.25 Total: 3.93 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -1.85 Total: -10.84 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: -0.16 Total: -37.14 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.67 Total: -18.31 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -31.13 -9.34 -40.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207911483.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.567 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds