Wall clock time and date at job start Tue Mar 31 2020 08:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.46891 * 2 1 4 4 C 1.46899 * 110.99966 * 199.66154 * 3 2 1 5 5 C 1.50709 * 109.47140 * 65.29010 * 4 3 2 6 6 H 1.07995 * 119.99736 * 4.95234 * 5 4 3 7 7 C 1.37874 * 120.00018 * 184.95117 * 5 4 3 8 8 N 1.31525 * 120.00018 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99993 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47183 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46724 * 120.00440 * 9 7 5 12 12 H 1.48504 * 109.47166 * 240.00104 * 9 7 5 13 13 C 1.46900 * 111.00111 * 75.70689 * 3 2 1 14 14 C 1.53008 * 109.47008 * 199.80421 * 13 3 2 15 15 H 1.08997 * 109.46961 * 306.00955 * 14 13 3 16 16 C 1.53004 * 109.46948 * 66.01129 * 14 13 3 17 17 C 1.52998 * 109.47009 * 186.00818 * 14 13 3 18 18 C 1.50697 * 109.47084 * 175.00516 * 17 14 13 19 19 C 1.38260 * 119.92457 * 269.97511 * 18 17 14 20 20 C 1.38240 * 120.13861 * 179.79360 * 19 18 17 21 21 C 1.38546 * 120.03255 * 0.43239 * 20 19 18 22 22 C 1.39268 * 119.82278 * 359.56954 * 21 20 19 23 23 C 1.38229 * 119.93186 * 90.00103 * 18 17 14 24 24 O 1.36503 * 108.63978 * 180.24813 * 22 21 20 25 25 C 1.43987 * 105.48191 * 342.72462 * 24 22 21 26 26 O 1.36492 * 131.53300 * 179.87902 * 21 20 19 27 27 H 1.08995 * 109.47433 * 184.66779 * 1 2 3 28 28 H 1.08993 * 109.47345 * 304.67349 * 1 2 3 29 29 H 1.09011 * 109.46987 * 64.67024 * 1 2 3 30 30 H 1.08993 * 109.46967 * 240.00342 * 2 1 3 31 31 H 1.08992 * 109.46770 * 119.99635 * 2 1 3 32 32 H 1.09004 * 109.47429 * 185.29189 * 4 3 2 33 33 H 1.08999 * 109.47232 * 305.29599 * 4 3 2 34 34 H 0.96999 * 119.99671 * 180.02562 * 8 7 5 35 35 H 1.09004 * 109.47094 * 79.80932 * 13 3 2 36 36 H 1.09000 * 109.47161 * 319.80658 * 13 3 2 37 37 H 1.08996 * 109.46951 * 185.55990 * 16 14 13 38 38 H 1.09007 * 109.46750 * 305.55702 * 16 14 13 39 39 H 1.08999 * 109.47232 * 65.55894 * 16 14 13 40 40 H 1.09001 * 109.47523 * 55.00107 * 17 14 13 41 41 H 1.09003 * 109.47072 * 295.00655 * 17 14 13 42 42 H 1.07997 * 119.92549 * 0.04258 * 19 18 17 43 43 H 1.08002 * 119.98079 * 180.33025 * 20 19 18 44 44 H 1.08002 * 119.98788 * 359.97438 * 23 18 17 45 45 H 1.09006 * 110.57085 * 268.54829 * 25 24 22 46 46 H 1.08996 * 110.57231 * 145.67975 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4127 1.4509 -0.4614 5 6 3.4838 1.0286 -1.9064 6 1 2.5764 0.8172 -2.4524 7 6 4.7073 0.9121 -2.5311 8 7 5.8125 1.1690 -1.8660 9 14 4.7955 0.3879 -4.3219 10 1 3.4224 0.1594 -4.8390 11 1 5.4526 1.4553 -5.1183 12 1 5.5817 -0.8671 -4.4323 13 6 1.8759 1.9942 1.3290 14 6 1.9150 3.5182 1.1983 15 1 2.8181 3.8140 0.6646 16 6 0.6851 3.9953 0.4233 17 6 1.9161 4.1496 2.5919 18 6 2.0781 5.6426 2.4668 19 6 3.3428 6.2015 2.4655 20 6 3.4967 7.5701 2.3466 21 6 2.3825 8.3863 2.2375 22 6 1.1087 7.8233 2.2388 23 6 0.9621 6.4505 2.3541 24 8 0.1890 8.8245 2.1155 25 6 0.8924 10.0357 2.4492 26 8 2.2610 9.7402 2.1134 27 1 -0.3634 -1.0242 0.0836 28 1 -0.3634 0.5846 0.8451 29 1 -0.3633 0.4397 -0.9290 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5137 0.8900 32 1 3.7802 2.4724 -0.3629 33 1 4.0275 0.7837 0.1427 34 1 6.6733 1.0874 -2.3057 35 1 2.6927 1.6635 1.9705 36 1 0.9247 1.6913 1.7666 37 1 0.7619 5.0677 0.2444 38 1 0.6308 3.4708 -0.5308 39 1 -0.2136 3.7872 1.0039 40 1 2.7421 3.7421 3.1749 41 1 0.9737 3.9271 3.0924 42 1 4.2123 5.5670 2.5534 43 1 4.4859 8.0035 2.3405 44 1 -0.0245 6.0113 2.3554 45 1 0.7975 10.2530 3.5132 46 1 0.5232 10.8698 1.8526 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208220524.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:39 Heat of formation + Delta-G solvation = -47.295959 kcal Electronic energy + Delta-G solvation = -25095.644615 eV Core-core repulsion = 21564.900129 eV Total energy + Delta-G solvation = -3530.744486 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.33 seconds Orbital eigenvalues (eV) -42.22899 -38.75489 -37.24506 -36.37371 -34.46531 -32.56258 -30.79680 -30.38735 -29.60032 -27.02790 -26.83893 -25.57031 -24.42058 -22.98629 -22.39684 -22.08076 -20.30875 -19.11037 -17.99608 -17.56074 -17.36969 -16.50775 -16.22081 -15.05386 -14.89206 -14.55571 -14.41898 -14.21705 -14.03138 -13.92299 -13.60197 -13.44004 -13.07704 -13.03273 -12.58558 -12.27615 -12.24739 -12.00130 -11.93942 -11.49988 -11.25264 -11.05580 -11.04649 -10.96106 -10.65163 -10.58964 -10.46841 -10.39964 -10.11289 -9.97758 -9.60928 -9.10147 -8.83609 -8.40873 -8.03426 -7.15132 -6.00511 -4.00956 1.10744 1.19716 2.65635 3.32074 3.32133 3.39835 3.44644 3.53659 4.43524 4.44740 4.47104 4.65772 4.80108 4.95863 5.03890 5.09511 5.23279 5.31767 5.35517 5.46620 5.58177 5.60290 5.75585 5.84738 5.96723 6.00607 6.03081 6.06781 6.10339 6.13879 6.20136 6.23256 6.34849 6.38829 6.45322 6.52821 6.59320 6.76860 6.85818 6.86786 6.94442 7.06623 7.36240 7.42720 7.86119 8.16495 8.27100 8.61622 9.08203 9.63297 11.10249 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015497 B = 0.003266 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.321734 B = 8572.390365 C = 9519.708992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.056 3.944 3 N -0.535 5.535 4 C 0.192 3.808 5 C -0.504 4.504 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.894 3.106 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.286 1.286 13 C 0.061 3.939 14 C -0.079 4.079 15 H 0.079 0.921 16 C -0.136 4.136 17 C -0.075 4.075 18 C -0.056 4.056 19 C -0.105 4.105 20 C -0.096 4.096 21 C 0.018 3.982 22 C 0.029 3.971 23 C -0.094 4.094 24 O -0.311 6.311 25 C 0.214 3.786 26 O -0.312 6.312 27 H 0.044 0.956 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.085 0.915 31 H 0.015 0.985 32 H 0.029 0.971 33 H -0.009 1.009 34 H 0.260 0.740 35 H 0.023 0.977 36 H 0.059 0.941 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.140 0.860 43 H 0.134 0.866 44 H 0.134 0.866 45 H 0.080 0.920 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.455 12.083 12.282 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.072 4.072 3 N -0.259 5.259 4 C 0.067 3.933 5 C -0.543 4.543 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.212 1.212 13 C -0.068 4.068 14 C -0.098 4.098 15 H 0.098 0.902 16 C -0.193 4.193 17 C -0.113 4.113 18 C -0.056 4.056 19 C -0.123 4.123 20 C -0.115 4.115 21 C -0.026 4.026 22 C -0.015 4.015 23 C -0.113 4.113 24 O -0.227 6.227 25 C 0.102 3.898 26 O -0.228 6.228 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.103 0.897 31 H 0.033 0.967 32 H 0.047 0.953 33 H 0.009 0.991 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.060 0.940 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.158 0.842 43 H 0.152 0.848 44 H 0.152 0.848 45 H 0.098 0.902 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.633 12.527 11.797 19.720 hybrid contribution 0.664 -0.363 -0.399 0.855 sum -8.969 12.164 11.398 18.929 Atomic orbital electron populations 1.21786 0.96789 0.99770 1.01624 1.21939 0.94033 0.90461 1.00754 1.62037 1.25159 1.16525 1.22182 1.19749 0.81644 0.96666 0.95251 1.21219 0.92362 1.44798 0.95935 0.91853 1.24984 0.95718 0.95760 0.98167 1.69971 0.97564 1.49843 1.36472 0.86497 0.78076 0.78088 0.85102 1.19669 1.21067 1.21193 1.22062 0.99308 0.93846 0.91590 1.21090 1.00403 0.94702 0.93638 0.90231 1.21743 0.96093 0.99989 1.01486 1.20706 1.02731 0.89232 0.98588 1.19672 0.91808 0.96028 0.98115 1.20921 0.97680 0.93263 1.00441 1.20069 0.96478 0.92316 1.02591 1.19772 0.94957 0.82759 1.05111 1.19761 0.86490 0.91111 1.04145 1.19962 1.00146 0.88097 1.03091 1.87351 1.34384 1.15248 1.85757 1.25559 0.74612 0.88649 1.01008 1.87340 1.29930 1.19781 1.85793 0.93720 0.93635 0.92461 0.89690 0.96678 0.95283 0.99082 0.93077 0.95874 0.92297 0.93819 0.90771 0.94043 0.90669 0.90992 0.84232 0.84847 0.84823 0.90211 0.85453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.21 10.07 37.16 0.37 -1.84 16 2 C 0.06 1.08 5.52 -3.82 -0.02 1.06 16 3 N -0.53 -11.05 3.77 -236.06 -0.89 -11.94 16 4 C 0.19 4.87 4.55 -4.97 -0.02 4.85 16 5 C -0.50 -13.96 8.11 -34.44 -0.28 -14.24 16 6 H 0.06 1.75 7.45 -52.49 -0.39 1.36 16 7 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 8 N -0.90 -26.50 13.29 55.43 0.74 -25.77 16 9 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 10 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.06 1.03 4.19 -3.82 -0.02 1.02 16 14 C -0.08 -1.23 2.44 -90.61 -0.22 -1.45 16 15 H 0.08 1.46 6.65 -51.93 -0.35 1.12 16 16 C -0.14 -2.06 8.53 37.16 0.32 -1.74 16 17 C -0.07 -0.92 4.84 -27.89 -0.13 -1.05 16 18 C -0.06 -0.70 4.72 -104.62 -0.49 -1.19 16 19 C -0.10 -1.29 9.69 -39.57 -0.38 -1.67 16 20 C -0.10 -1.18 10.06 -39.47 -0.40 -1.57 16 21 C 0.02 0.24 7.15 -39.08 -0.28 -0.04 16 22 C 0.03 0.39 7.15 -39.09 -0.28 0.11 16 23 C -0.09 -1.19 8.11 -39.47 -0.32 -1.51 16 24 O -0.31 -3.88 11.40 -45.70 -0.52 -4.40 16 25 C 0.21 1.96 8.89 101.05 0.90 2.86 16 26 O -0.31 -3.88 11.40 -45.66 -0.52 -4.40 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.66 6.66 -51.93 -0.35 0.31 16 29 H 0.06 0.92 8.14 -51.92 -0.42 0.50 16 30 H 0.08 1.82 6.61 -51.93 -0.34 1.48 16 31 H 0.01 0.28 8.00 -51.93 -0.42 -0.14 16 32 H 0.03 0.78 6.58 -51.93 -0.34 0.44 16 33 H -0.01 -0.24 8.13 -51.93 -0.42 -0.66 16 34 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 35 H 0.02 0.41 8.00 -51.93 -0.42 -0.01 16 36 H 0.06 0.90 6.44 -51.93 -0.33 0.56 16 37 H 0.04 0.65 6.64 -51.93 -0.34 0.30 16 38 H 0.07 1.31 7.64 -51.93 -0.40 0.91 16 39 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 41 H 0.07 0.78 8.08 -51.93 -0.42 0.36 16 42 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 43 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.13 1.51 8.04 -52.49 -0.42 1.09 16 45 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 46 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 368.34 15.07 5.55 5.55 Total: -1.00 -30.98 368.34 -9.47 -40.45 By element: Atomic # 1 Polarization: 6.34 SS G_CDS: -7.45 Total: -1.11 kcal Atomic # 6 Polarization: -13.62 SS G_CDS: -1.36 Total: -14.98 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: -0.15 Total: -37.71 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -1.04 Total: -8.80 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -30.98 -9.47 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208220524.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.848 kcal (2) G-P(sol) polarization free energy of solvation -30.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.33 seconds