Wall clock time and date at job start Tue Mar 31 2020 10:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47183 * 2 1 4 4 C 1.34709 * 116.99971 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00215 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.39633 * 120.15316 * 179.97438 * 6 4 3 8 8 C 1.37938 * 119.84852 * 180.30600 * 7 6 4 9 9 C 1.38372 * 120.14963 * 359.44003 * 8 7 6 10 10 C 1.50708 * 119.84796 * 180.28044 * 9 8 7 11 11 C 1.52998 * 109.47208 * 270.27845 * 10 9 8 12 12 C 1.53004 * 109.47026 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47090 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00010 * 66.04791 * 13 12 11 15 15 C 1.46901 * 110.99913 * 190.00574 * 13 12 11 16 16 C 1.50692 * 109.47133 * 169.99990 * 15 13 12 17 17 H 1.07998 * 120.00328 * 359.97438 * 16 15 13 18 18 C 1.37886 * 119.99911 * 179.97438 * 16 15 13 19 19 N 1.31505 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99753 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47359 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47132 * 120.00174 * 20 18 16 23 23 H 1.48497 * 109.47197 * 239.99945 * 20 18 16 24 24 C 1.38363 * 120.30454 * 0.56443 * 9 8 7 25 25 C 1.37948 * 120.14806 * 359.71588 * 24 9 8 26 26 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47224 * 299.99983 * 1 2 3 28 28 H 1.09003 * 109.47471 * 60.00245 * 1 2 3 29 29 H 1.09004 * 109.46780 * 239.99718 * 2 1 3 30 30 H 1.09004 * 109.47030 * 120.00059 * 2 1 3 31 31 H 1.08002 * 120.07109 * 0.02562 * 7 6 4 32 32 H 1.07998 * 119.92553 * 179.70097 * 8 7 6 33 33 H 1.09000 * 109.46665 * 30.28514 * 10 9 8 34 34 H 1.08996 * 109.46685 * 150.27641 * 10 9 8 35 35 H 1.09002 * 109.47124 * 300.00037 * 11 10 9 36 36 H 1.09000 * 109.46774 * 60.00463 * 11 10 9 37 37 H 1.09000 * 109.46869 * 300.00682 * 12 11 10 38 38 H 1.09005 * 109.46771 * 60.00166 * 12 11 10 39 39 H 1.08999 * 109.47274 * 60.00135 * 14 13 12 40 40 H 1.09001 * 109.47142 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.47281 * 299.99649 * 14 13 12 42 42 H 1.09004 * 109.46793 * 289.99891 * 15 13 12 43 43 H 1.08998 * 109.47382 * 49.99440 * 15 13 12 44 44 H 0.97005 * 120.00215 * 180.02562 * 19 18 16 45 45 H 1.07997 * 119.93022 * 179.74159 * 24 9 8 46 46 H 1.08004 * 120.07515 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0015 6 6 3.9141 2.9104 -0.0011 7 6 5.2979 3.0970 -0.0012 8 6 5.8184 4.3744 0.0047 9 6 4.9727 5.4695 -0.0012 10 6 5.5487 6.8622 -0.0012 11 6 5.7437 7.3335 1.4413 12 6 6.3291 8.7471 1.4413 13 7 6.5168 9.1993 2.8262 14 6 7.5412 8.3969 3.5078 15 6 6.8510 10.6291 2.8724 16 6 6.7947 11.1123 4.2986 17 1 6.5361 10.4261 5.0915 18 6 7.0734 12.4305 4.5914 19 7 7.3889 13.2660 3.6261 20 14 7.0029 13.0297 6.3593 21 1 6.6263 11.9022 7.2495 22 1 8.3343 13.5526 6.7582 23 1 5.9914 14.1106 6.4757 24 6 3.6005 5.2920 -0.0011 25 6 3.0665 4.0200 -0.0011 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9591 2.2431 -0.0011 32 1 6.8885 4.5201 0.0095 33 1 6.5100 6.8577 -0.5151 34 1 4.8652 7.5380 -0.5150 35 1 4.7823 7.3379 1.9551 36 1 6.4272 6.6575 1.9551 37 1 7.2904 8.7421 0.9275 38 1 5.6459 9.4232 0.9273 39 1 8.4890 8.4914 2.9778 40 1 7.6598 8.7525 4.5313 41 1 7.2346 7.3509 3.5203 42 1 7.8555 10.7803 2.4769 43 1 6.1355 11.1891 2.2705 44 1 7.5853 14.1933 3.8320 45 1 2.9460 6.1510 -0.0015 46 1 1.9952 3.8828 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001208863482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:26 Heat of formation + Delta-G solvation = -76.059557 kcal Electronic energy + Delta-G solvation = -23483.424203 eV Core-core repulsion = 19951.432434 eV Total energy + Delta-G solvation = -3531.991770 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.84935 -39.32901 -37.06524 -36.79667 -34.28424 -32.56926 -32.13035 -31.22227 -30.43965 -27.36336 -26.62979 -24.94263 -23.80955 -22.86734 -22.59788 -21.39154 -20.64272 -19.98685 -18.34203 -17.29097 -16.87806 -16.34992 -15.66283 -15.63953 -14.94106 -14.73536 -14.65890 -14.54777 -14.10841 -13.81875 -13.70394 -13.41242 -13.22974 -13.13324 -12.99274 -12.36674 -12.11965 -12.01811 -11.91874 -11.75507 -11.68926 -11.26484 -11.16340 -10.98549 -10.91394 -10.86328 -10.78013 -10.57068 -10.46415 -10.24229 -9.78938 -9.24430 -9.21101 -8.96840 -8.44005 -7.22779 -6.02768 -4.03843 0.44272 1.13381 2.27765 2.30068 3.30909 3.38272 3.43386 3.52668 4.29854 4.42186 4.51229 4.54765 4.56049 4.61582 4.71390 4.84423 4.99485 5.01314 5.13538 5.22615 5.31739 5.32787 5.34704 5.43717 5.53857 5.56496 5.69741 5.73288 5.81492 5.91301 5.98681 6.02657 6.08911 6.17552 6.20277 6.26561 6.37784 6.51989 6.56439 6.62692 6.77760 7.30134 7.35246 7.44798 7.81160 8.09680 8.21072 8.56542 9.04351 9.60399 11.08199 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.001944 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.138264 B =14400.845700 C =14760.188066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.063 3.937 3 O -0.354 6.354 4 C 0.512 3.488 5 O -0.511 6.511 6 C -0.142 4.142 7 C -0.051 4.051 8 C -0.131 4.131 9 C -0.031 4.031 10 C -0.089 4.089 11 C -0.108 4.108 12 C 0.055 3.945 13 N -0.542 5.542 14 C 0.036 3.964 15 C 0.192 3.808 16 C -0.506 4.506 17 H 0.064 0.936 18 C 0.054 3.946 19 N -0.899 5.899 20 Si 0.898 3.102 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.131 4.131 25 C -0.058 4.058 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.021 0.979 38 H 0.067 0.933 39 H 0.009 0.991 40 H 0.073 0.927 41 H 0.046 0.954 42 H -0.010 1.010 43 H 0.029 0.971 44 H 0.260 0.740 45 H 0.134 0.866 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.334 -23.617 -10.781 27.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.271 6.271 4 C 0.358 3.642 5 O -0.401 6.401 6 C -0.143 4.143 7 C -0.069 4.069 8 C -0.149 4.149 9 C -0.032 4.032 10 C -0.127 4.127 11 C -0.146 4.146 12 C -0.073 4.073 13 N -0.267 5.267 14 C -0.113 4.113 15 C 0.067 3.933 16 C -0.545 4.545 17 H 0.082 0.918 18 C -0.147 4.147 19 N -0.539 5.539 20 Si 0.726 3.274 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.149 4.149 25 C -0.076 4.076 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.153 0.847 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.090 0.910 36 H 0.081 0.919 37 H 0.039 0.961 38 H 0.086 0.914 39 H 0.028 0.972 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.008 0.992 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.152 0.848 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -10.547 -23.802 -10.554 28.092 hybrid contribution 0.816 0.386 0.472 1.018 sum -9.731 -23.416 -10.083 27.289 Atomic orbital electron populations 1.21817 0.92425 1.03079 1.03693 1.23050 0.95451 0.79915 1.02702 1.86545 1.23870 1.32498 1.84232 1.21239 0.80518 0.89973 0.72456 1.90823 1.60421 1.42566 1.46262 1.19042 0.94135 0.89757 1.11347 1.21231 0.93188 0.97990 0.94519 1.21061 1.00409 0.91345 1.02063 1.20354 0.93550 0.96045 0.93203 1.20777 1.01437 0.91639 0.98842 1.21587 1.02198 0.96830 0.93967 1.22052 0.98603 0.95063 0.91618 1.62090 1.45486 1.06527 1.12554 1.22244 0.92198 0.96365 1.00448 1.19738 0.94590 0.81236 0.97785 1.21220 1.45832 0.94580 0.92873 0.91797 1.25003 0.95470 0.96796 0.97468 1.69967 1.47673 1.04573 1.31683 0.86443 0.77507 0.78752 0.84728 1.19656 1.21129 1.21016 1.21128 0.94853 0.97201 1.01712 1.21441 1.00097 0.91551 0.94524 0.90134 0.91317 0.91382 0.91164 0.91111 0.84678 0.84908 0.90655 0.90338 0.91025 0.91941 0.96092 0.91448 0.97223 0.90854 0.93536 0.99208 0.95261 0.93005 0.84830 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.29 37.16 0.38 -0.36 16 2 C 0.06 0.46 6.19 37.16 0.23 0.69 16 3 O -0.35 -3.49 9.47 -40.52 -0.38 -3.88 16 4 C 0.51 5.92 7.90 34.61 0.27 6.19 16 5 O -0.51 -6.99 16.14 -19.24 -0.31 -7.30 16 6 C -0.14 -1.53 5.87 -104.98 -0.62 -2.15 16 7 C -0.05 -0.53 9.60 -39.17 -0.38 -0.91 16 8 C -0.13 -1.30 9.68 -39.64 -0.38 -1.68 16 9 C -0.03 -0.32 5.14 -104.52 -0.54 -0.86 16 10 C -0.09 -0.94 5.34 -27.88 -0.15 -1.08 16 11 C -0.11 -1.45 5.12 -26.73 -0.14 -1.59 16 12 C 0.06 0.95 4.96 -3.82 -0.02 0.93 16 13 N -0.54 -11.67 4.75 -244.37 -1.16 -12.83 16 14 C 0.04 0.70 9.14 60.06 0.55 1.25 16 15 C 0.19 5.02 4.72 -4.98 -0.02 4.99 16 16 C -0.51 -14.31 8.46 -34.44 -0.29 -14.60 16 17 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 18 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 20 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 21 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 24 C -0.13 -1.26 9.68 -39.64 -0.38 -1.64 16 25 C -0.06 -0.55 9.62 -39.17 -0.38 -0.93 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.14 1.32 7.65 -52.49 -0.40 0.92 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.08 0.77 8.08 -51.93 -0.42 0.35 16 35 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.06 0.84 6.55 -51.93 -0.34 0.50 16 37 H 0.02 0.36 8.12 -51.93 -0.42 -0.07 16 38 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 39 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 40 H 0.07 1.54 6.76 -51.93 -0.35 1.19 16 41 H 0.05 0.77 6.47 -51.93 -0.34 0.43 16 42 H -0.01 -0.28 8.12 -51.93 -0.42 -0.70 16 43 H 0.03 0.81 7.93 -51.93 -0.41 0.40 16 44 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 45 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.14 1.08 7.61 -52.48 -0.40 0.68 16 LS Contribution 383.52 15.07 5.78 5.78 Total: -1.00 -32.12 383.52 -9.97 -42.09 By element: Atomic # 1 Polarization: 3.48 SS G_CDS: -7.65 Total: -4.16 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -1.96 Total: -10.30 kcal Atomic # 7 Polarization: -38.44 SS G_CDS: -0.43 Total: -38.87 kcal Atomic # 8 Polarization: -10.49 SS G_CDS: -0.69 Total: -11.18 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -32.12 -9.97 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208863482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.973 kcal (2) G-P(sol) polarization free energy of solvation -32.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds