Wall clock time and date at job start Tue Mar 31 2020 10:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45196 * 109.47183 * 2 1 4 4 C 1.34709 * 116.99971 * 180.02562 * 3 2 1 5 5 O 1.21471 * 120.00215 * 0.02562 * 4 3 2 6 6 C 1.47723 * 120.00179 * 179.97438 * 4 3 2 7 7 C 1.39633 * 120.15316 * 179.97438 * 6 4 3 8 8 C 1.37938 * 119.84852 * 180.30600 * 7 6 4 9 9 C 1.38372 * 120.14963 * 359.44003 * 8 7 6 10 10 C 1.50708 * 119.84796 * 180.28044 * 9 8 7 11 11 C 1.52998 * 109.47208 * 270.27845 * 10 9 8 12 12 C 1.53004 * 109.47026 * 179.97438 * 11 10 9 13 13 N 1.46897 * 109.47090 * 180.02562 * 12 11 10 14 14 C 1.46895 * 111.00010 * 66.04791 * 13 12 11 15 15 C 1.46901 * 110.99913 * 190.00574 * 13 12 11 16 16 C 1.50692 * 109.47133 * 169.99990 * 15 13 12 17 17 H 1.07998 * 120.00328 * 359.97438 * 16 15 13 18 18 C 1.37886 * 119.99911 * 179.97438 * 16 15 13 19 19 N 1.31505 * 119.99907 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99753 * 179.97438 * 18 16 15 21 21 H 1.48501 * 109.47359 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47132 * 120.00174 * 20 18 16 23 23 H 1.48497 * 109.47197 * 239.99945 * 20 18 16 24 24 C 1.38363 * 120.30454 * 0.56443 * 9 8 7 25 25 C 1.37948 * 120.14806 * 359.71588 * 24 9 8 26 26 H 1.09004 * 109.47419 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.47224 * 299.99983 * 1 2 3 28 28 H 1.09003 * 109.47471 * 60.00245 * 1 2 3 29 29 H 1.09004 * 109.46780 * 239.99718 * 2 1 3 30 30 H 1.09004 * 109.47030 * 120.00059 * 2 1 3 31 31 H 1.08002 * 120.07109 * 0.02562 * 7 6 4 32 32 H 1.07998 * 119.92553 * 179.70097 * 8 7 6 33 33 H 1.09000 * 109.46665 * 30.28514 * 10 9 8 34 34 H 1.08996 * 109.46685 * 150.27641 * 10 9 8 35 35 H 1.09002 * 109.47124 * 300.00037 * 11 10 9 36 36 H 1.09000 * 109.46774 * 60.00463 * 11 10 9 37 37 H 1.09000 * 109.46869 * 300.00682 * 12 11 10 38 38 H 1.09005 * 109.46771 * 60.00166 * 12 11 10 39 39 H 1.08999 * 109.47274 * 60.00135 * 14 13 12 40 40 H 1.09001 * 109.47142 * 180.02562 * 14 13 12 41 41 H 1.09006 * 109.47281 * 299.99649 * 14 13 12 42 42 H 1.09004 * 109.46793 * 289.99891 * 15 13 12 43 43 H 1.08998 * 109.47382 * 49.99440 * 15 13 12 44 44 H 0.97005 * 120.00215 * 180.02562 * 19 18 16 45 45 H 1.07997 * 119.93022 * 179.74159 * 24 9 8 46 46 H 1.08004 * 120.07515 * 179.97438 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3494 1.5454 -0.0005 5 8 4.0894 0.5821 -0.0015 6 6 3.9141 2.9104 -0.0011 7 6 5.2979 3.0970 -0.0012 8 6 5.8184 4.3744 0.0047 9 6 4.9727 5.4695 -0.0012 10 6 5.5487 6.8622 -0.0012 11 6 5.7437 7.3335 1.4413 12 6 6.3291 8.7471 1.4413 13 7 6.5168 9.1993 2.8262 14 6 7.5412 8.3969 3.5078 15 6 6.8510 10.6291 2.8724 16 6 6.7947 11.1123 4.2986 17 1 6.5361 10.4261 5.0915 18 6 7.0734 12.4305 4.5914 19 7 7.3889 13.2660 3.6261 20 14 7.0029 13.0297 6.3593 21 1 6.6263 11.9022 7.2495 22 1 8.3343 13.5526 6.7582 23 1 5.9914 14.1106 6.4757 24 6 3.6005 5.2920 -0.0011 25 6 3.0665 4.0200 -0.0011 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 5.9591 2.2431 -0.0011 32 1 6.8885 4.5201 0.0095 33 1 6.5100 6.8577 -0.5151 34 1 4.8652 7.5380 -0.5150 35 1 4.7823 7.3379 1.9551 36 1 6.4272 6.6575 1.9551 37 1 7.2904 8.7421 0.9275 38 1 5.6459 9.4232 0.9273 39 1 8.4890 8.4914 2.9778 40 1 7.6598 8.7525 4.5313 41 1 7.2346 7.3509 3.5203 42 1 7.8555 10.7803 2.4769 43 1 6.1355 11.1891 2.2705 44 1 7.5853 14.1933 3.8320 45 1 2.9460 6.1510 -0.0015 46 1 1.9952 3.8828 -0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001208863482.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:01:26 Heat of formation + Delta-G solvation = -93.268689 kcal Electronic energy + Delta-G solvation = -23484.170447 eV Core-core repulsion = 19951.432434 eV Total energy + Delta-G solvation = -3532.738013 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67157 -40.12417 -38.55404 -37.70157 -35.51183 -34.44702 -32.78345 -31.95951 -31.52066 -29.19311 -27.95179 -26.37476 -24.76196 -23.75529 -23.46523 -22.64348 -21.59101 -21.43843 -19.13186 -18.49331 -18.10107 -17.62795 -16.85692 -16.61687 -16.49250 -15.92853 -15.76991 -15.44649 -15.23093 -15.08237 -14.77768 -14.42993 -14.29115 -14.04656 -13.86655 -13.61817 -13.25740 -13.15311 -12.98967 -12.89989 -12.72875 -12.61337 -12.54740 -12.37792 -12.30451 -12.11194 -12.04673 -11.82665 -11.60985 -11.56971 -11.35391 -11.17123 -10.61920 -9.98852 -9.81825 -8.98684 -8.20198 -6.30162 -0.37084 0.39099 1.41469 1.42125 1.43367 1.55864 1.57663 2.40930 2.74027 3.12219 3.36242 3.56935 3.80560 3.85520 3.99060 3.99199 4.05853 4.11583 4.32379 4.35806 4.38030 4.44443 4.45417 4.60847 4.68697 4.73743 4.75548 4.85031 4.87340 4.91718 4.98028 5.05169 5.09893 5.10475 5.18746 5.24996 5.26891 5.31117 5.33298 5.41737 5.45268 5.63929 5.66904 5.87306 6.06957 6.35349 6.61318 6.68340 6.86788 7.39674 8.91009 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026784 B = 0.001944 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.138264 B =14400.845700 C =14760.188066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 O -0.355 6.355 4 C 0.512 3.488 5 O -0.540 6.540 6 C -0.156 4.156 7 C -0.060 4.060 8 C -0.131 4.131 9 C -0.037 4.037 10 C -0.080 4.080 11 C -0.094 4.094 12 C 0.054 3.946 13 N -0.552 5.552 14 C 0.040 3.960 15 C 0.205 3.795 16 C -0.524 4.524 17 H 0.063 0.937 18 C 0.000 4.000 19 N -0.935 5.935 20 Si 0.970 3.030 21 H -0.264 1.264 22 H -0.278 1.278 23 H -0.278 1.278 24 C -0.133 4.133 25 C -0.055 4.055 26 H 0.101 0.899 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.136 0.864 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.023 0.977 38 H 0.062 0.938 39 H 0.009 0.991 40 H 0.053 0.947 41 H 0.081 0.919 42 H -0.039 1.039 43 H 0.005 0.995 44 H 0.264 0.736 45 H 0.150 0.850 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.289 -24.452 -10.360 28.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.020 4.020 3 O -0.272 6.272 4 C 0.360 3.640 5 O -0.432 6.432 6 C -0.157 4.157 7 C -0.078 4.078 8 C -0.149 4.149 9 C -0.038 4.038 10 C -0.118 4.118 11 C -0.132 4.132 12 C -0.074 4.074 13 N -0.277 5.277 14 C -0.109 4.109 15 C 0.079 3.921 16 C -0.562 4.562 17 H 0.081 0.919 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.795 3.205 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.204 1.204 24 C -0.150 4.150 25 C -0.073 4.073 26 H 0.119 0.881 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.153 0.847 32 H 0.165 0.835 33 H 0.103 0.897 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.042 0.958 38 H 0.081 0.919 39 H 0.028 0.972 40 H 0.072 0.928 41 H 0.099 0.901 42 H -0.021 1.021 43 H 0.023 0.977 44 H 0.073 0.927 45 H 0.167 0.833 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.522 -24.659 -10.142 29.046 hybrid contribution 1.081 0.590 0.282 1.263 sum -10.441 -24.069 -9.860 28.028 Atomic orbital electron populations 1.21834 0.90223 1.04485 1.03814 1.23337 0.97156 0.78811 1.02681 1.86545 1.22916 1.33996 1.83720 1.21437 0.80886 0.90004 0.71710 1.90801 1.61113 1.43464 1.47859 1.19192 0.94600 0.89822 1.12048 1.21330 0.93244 0.98386 0.94813 1.21233 1.01235 0.90964 1.01483 1.20370 0.93907 0.95757 0.93726 1.20668 1.02369 0.91933 0.96821 1.21433 1.01497 0.94127 0.96144 1.22163 0.98921 0.97234 0.89098 1.62020 1.45929 1.04208 1.15496 1.22236 0.91910 0.97727 0.98988 1.19400 0.92139 0.84197 0.96363 1.21531 1.45932 0.95034 0.93752 0.91908 1.25932 0.94839 0.96946 1.02098 1.70088 1.48363 1.05025 1.34046 0.85320 0.77754 0.78297 0.79153 1.18760 1.20418 1.20362 1.21354 0.94953 0.97711 1.01024 1.21602 1.00784 0.91146 0.93817 0.88086 0.91280 0.91110 0.91120 0.91307 0.84651 0.83473 0.89669 0.89444 0.91574 0.91648 0.95834 0.91943 0.97212 0.92808 0.90074 1.02129 0.97725 0.92692 0.83274 0.83071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 10.29 71.98 0.74 -0.44 16 2 C 0.05 0.75 6.19 71.98 0.45 1.20 16 3 O -0.36 -6.74 9.47 -56.19 -0.53 -7.27 16 4 C 0.51 11.67 7.90 70.33 0.56 12.22 16 5 O -0.54 -14.89 16.14 19.93 0.32 -14.57 16 6 C -0.16 -3.22 5.87 -20.10 -0.12 -3.34 16 7 C -0.06 -1.18 9.60 22.54 0.22 -0.97 16 8 C -0.13 -2.36 9.68 22.23 0.22 -2.15 16 9 C -0.04 -0.68 5.14 -19.80 -0.10 -0.78 16 10 C -0.08 -1.49 5.34 29.85 0.16 -1.33 16 11 C -0.09 -2.34 5.12 30.60 0.16 -2.18 16 12 C 0.05 1.81 4.96 86.31 0.43 2.23 16 13 N -0.55 -23.71 4.75 -927.06 -4.41 -28.11 16 14 C 0.04 1.51 9.14 127.69 1.17 2.68 16 15 C 0.21 11.03 4.72 85.55 0.40 11.44 16 16 C -0.52 -29.97 8.46 25.60 0.22 -29.75 16 17 H 0.06 3.53 7.12 -2.91 -0.02 3.51 16 18 C 0.00 -0.02 5.46 84.66 0.46 0.44 16 19 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 20 Si 0.97 44.39 29.54 68.60 2.03 46.42 16 21 H -0.26 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 23 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 24 C -0.13 -2.26 9.68 22.23 0.22 -2.04 16 25 C -0.06 -0.97 9.62 22.54 0.22 -0.75 16 26 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 27 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 28 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 31 H 0.14 2.61 7.65 -2.91 -0.02 2.59 16 32 H 0.15 2.15 8.06 -2.91 -0.02 2.12 16 33 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.09 1.50 8.08 -2.39 -0.02 1.48 16 35 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.06 1.59 6.55 -2.39 -0.02 1.58 16 37 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 38 H 0.06 2.13 7.93 -2.38 -0.02 2.11 16 39 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 40 H 0.05 2.24 6.76 -2.39 -0.02 2.23 16 41 H 0.08 2.52 6.47 -2.38 -0.02 2.50 16 42 H -0.04 -2.27 8.12 -2.38 -0.02 -2.29 16 43 H 0.00 0.27 7.93 -2.39 -0.02 0.25 16 44 H 0.26 14.92 8.31 -92.70 -0.77 14.15 16 45 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.15 2.10 7.61 -2.91 -0.02 2.08 16 Total: -1.00 -69.50 383.52 4.01 -65.49 By element: Atomic # 1 Polarization: 6.76 SS G_CDS: 0.94 Total: 7.70 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 5.38 Total: -13.52 kcal Atomic # 7 Polarization: -80.12 SS G_CDS: -4.12 Total: -84.24 kcal Atomic # 8 Polarization: -21.64 SS G_CDS: -0.21 Total: -21.85 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -69.50 4.01 -65.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001208863482.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.783 kcal (2) G-P(sol) polarization free energy of solvation -69.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds