Wall clock time and date at job start Tue Mar 31 2020 10:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 109.47185 * 2 1 4 4 C 1.46901 * 109.47320 * 239.99948 * 2 1 3 5 5 C 1.46905 * 109.47041 * 120.00079 * 2 1 3 6 6 C 1.52997 * 109.47314 * 64.35614 * 5 2 1 7 7 H 1.09003 * 109.47124 * 179.69420 * 6 5 2 8 8 C 1.50694 * 109.47215 * 299.69575 * 6 5 2 9 9 H 1.08001 * 120.00448 * 113.99936 * 8 6 5 10 10 C 1.37880 * 120.00244 * 293.99946 * 8 6 5 11 11 N 1.31509 * 120.00297 * 179.97438 * 10 8 6 12 12 Si 1.86808 * 119.99622 * 359.97438 * 10 8 6 13 13 H 1.48501 * 109.46694 * 90.00092 * 12 10 8 14 14 H 1.48494 * 109.46950 * 210.00321 * 12 10 8 15 15 H 1.48504 * 109.46965 * 330.00273 * 12 10 8 16 16 O 1.42905 * 109.46980 * 59.69696 * 6 5 2 17 17 C 1.42891 * 114.00240 * 89.95372 * 16 6 5 18 18 C 1.50698 * 109.47330 * 180.86375 * 17 16 6 19 19 C 1.36376 * 120.17994 * 0.02562 * 18 17 16 20 20 C 1.38908 * 120.35142 * 180.02562 * 19 18 17 21 21 C 1.38947 * 120.70154 * 0.02562 * 20 19 18 22 22 C 1.36339 * 120.34654 * 359.97438 * 21 20 19 23 23 C 1.41814 * 120.18548 * 179.72701 * 18 17 16 24 24 N 1.32507 * 120.33365 * 359.97438 * 23 18 17 25 25 N 1.12395 * 119.99772 * 180.02562 * 24 23 18 26 26 N 8.57202 * 138.81712 * 182.04087 * 2 1 3 27 27 H 1.09003 * 109.47028 * 279.98213 * 1 2 3 28 28 H 1.08998 * 109.47228 * 39.97940 * 1 2 3 29 29 H 1.08997 * 109.46954 * 159.98767 * 1 2 3 30 30 H 1.08995 * 109.47061 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46792 * 300.00108 * 3 2 1 32 32 H 1.08996 * 109.46738 * 60.00254 * 3 2 1 33 33 H 1.09005 * 109.46655 * 321.07701 * 4 2 1 34 34 H 1.08993 * 109.46902 * 81.07221 * 4 2 1 35 35 H 1.08994 * 109.47544 * 201.07570 * 4 2 1 36 36 H 1.09000 * 109.47429 * 304.35580 * 5 2 1 37 37 H 1.09003 * 109.46648 * 184.35683 * 5 2 1 38 38 H 0.96999 * 120.00159 * 180.02562 * 11 10 8 39 39 H 1.09003 * 109.47604 * 300.86990 * 17 16 6 40 40 H 1.09005 * 109.47091 * 60.86725 * 17 16 6 41 41 H 1.08002 * 119.82902 * 0.02562 * 19 18 17 42 42 H 1.08003 * 119.64968 * 179.97438 * 20 19 18 43 43 H 1.08004 * 119.82333 * 179.97438 * 21 20 19 44 44 H 1.08008 * 120.17798 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6925 1.1995 6 6 1.5401 -2.1632 1.1459 7 1 1.9081 -2.6782 2.0333 8 6 0.0368 -2.2562 1.0983 9 1 -0.4526 -2.6452 0.2177 10 6 -0.7140 -1.8446 2.1790 11 7 -2.0260 -1.9253 2.1373 12 14 0.1325 -1.1723 3.7026 13 1 0.2942 0.2979 3.5707 14 1 -0.6915 -1.4743 4.9005 15 1 1.4676 -1.8063 3.8474 16 8 2.0924 -2.7733 -0.0224 17 6 3.3847 -3.3490 0.1782 18 6 3.8771 -3.9419 -1.1167 19 6 3.1066 -3.8715 -2.2398 20 6 3.5567 -4.4173 -3.4352 21 6 4.7953 -5.0429 -3.5075 22 6 5.5889 -5.1295 -2.4023 23 6 5.1469 -4.5706 -1.1759 24 7 5.9097 -4.6412 -0.0947 25 7 6.9153 -5.1404 -0.1480 26 7 7.9204 -5.6408 -0.2010 27 1 -0.3633 0.1781 1.0121 28 1 -0.3633 0.7875 -0.6603 29 1 -0.3633 -0.9656 -0.3517 30 1 3.0486 1.3850 0.0005 31 1 1.5953 1.8988 -0.8900 32 1 1.5954 1.8987 0.8900 33 1 1.3260 -1.5562 -1.4040 34 1 1.9295 -0.0112 -2.0497 35 1 2.9839 -1.0240 -1.0345 36 1 1.5330 -0.2258 2.0878 37 1 3.0459 -0.6254 1.2393 38 1 -2.5542 -1.6354 2.8975 39 1 4.0786 -2.5772 0.5115 40 1 3.3207 -4.1311 0.9348 41 1 2.1413 -3.3888 -2.1996 42 1 2.9370 -4.3554 -4.3176 43 1 5.1310 -5.4628 -4.4443 44 1 6.5513 -5.6160 -2.4617 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223686825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:14 Heat of formation + Delta-G solvation = 224.566505 kcal Electronic energy + Delta-G solvation = -26282.061289 eV Core-core repulsion = 22743.628223 eV Total energy + Delta-G solvation = -3538.433066 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.172 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.70496 -43.35647 -40.55845 -38.70821 -37.77593 -35.05650 -33.36645 -31.80275 -31.67301 -30.24760 -29.89513 -28.13492 -27.14044 -25.53934 -24.40813 -23.15199 -22.56926 -20.82095 -19.63390 -19.53782 -19.21366 -18.46687 -18.23971 -17.82984 -17.49842 -17.09234 -16.90184 -16.59185 -16.15387 -15.59479 -15.27387 -15.17675 -14.99878 -14.72027 -14.31390 -14.23503 -14.13954 -13.93566 -13.77704 -13.52183 -13.39888 -13.15226 -13.05651 -12.70639 -12.51497 -12.47447 -12.06791 -11.75319 -11.46872 -11.42939 -11.09824 -10.71407 -10.31711 -10.04064 -8.95085 -7.91212 -5.98729 -0.49952 0.05386 0.20807 0.49691 1.43424 1.51736 1.63280 1.72121 1.92016 2.35489 2.46991 2.50932 2.61270 2.62415 2.65462 3.23927 3.28074 3.33999 3.54723 3.59760 3.63454 3.66104 3.73148 3.81013 3.84642 3.90542 4.00736 4.02924 4.14954 4.21135 4.27404 4.36638 4.41716 4.43808 4.54317 4.85020 4.85546 4.93532 5.05635 5.08752 5.31243 5.37125 5.59839 5.75306 6.06810 6.68781 7.11603 7.57513 8.18282 9.17052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.248 5.248 3 C -0.046 4.046 4 C -0.029 4.029 5 C -0.039 4.039 6 C 0.174 3.826 7 H 0.066 0.934 8 C -0.560 4.560 9 H 0.102 0.898 10 C 0.085 3.915 11 N -0.845 5.845 12 Si 0.847 3.153 13 H -0.271 1.271 14 H -0.267 1.267 15 H -0.258 1.258 16 O -0.374 6.374 17 C 0.100 3.900 18 C -0.059 4.059 19 C -0.077 4.077 20 C -0.125 4.125 21 C -0.087 4.087 22 C -0.178 4.178 23 C 0.103 3.897 24 N -0.322 5.322 25 N 0.276 4.724 26 N -0.126 5.126 27 H 0.110 0.890 28 H 0.082 0.918 29 H 0.163 0.837 30 H 0.109 0.891 31 H 0.114 0.886 32 H 0.110 0.890 33 H 0.140 0.860 34 H 0.095 0.905 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.284 0.716 39 H 0.061 0.939 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 8.834 -8.095 14.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 N 0.095 4.905 3 C -0.188 4.188 4 C -0.169 4.169 5 C -0.161 4.161 6 C 0.116 3.884 7 H 0.084 0.916 8 C -0.596 4.596 9 H 0.120 0.880 10 C -0.125 4.125 11 N -0.476 5.476 12 Si 0.673 3.327 13 H -0.197 1.197 14 H -0.192 1.192 15 H -0.182 1.182 16 O -0.293 6.293 17 C 0.023 3.977 18 C -0.065 4.065 19 C -0.095 4.095 20 C -0.145 4.145 21 C -0.105 4.105 22 C -0.202 4.202 23 C 0.000 4.000 24 N -0.219 5.219 25 N 0.281 4.719 26 N -0.114 5.114 27 H 0.129 0.871 28 H 0.100 0.900 29 H 0.181 0.819 30 H 0.127 0.873 31 H 0.133 0.867 32 H 0.129 0.871 33 H 0.158 0.842 34 H 0.114 0.886 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.164 0.836 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 8.139 8.743 -7.546 14.129 hybrid contribution 0.527 0.236 0.961 1.122 sum 8.667 8.979 -6.585 14.110 Atomic orbital electron populations 1.24862 0.74462 1.09979 1.07958 1.45678 1.16881 1.12864 1.15115 1.24089 1.04486 0.81991 1.08219 1.24318 1.05656 1.01322 0.85652 1.25040 1.01733 1.02219 0.87155 1.20520 0.96535 0.84130 0.87224 0.91615 1.20667 0.86122 1.47587 1.05210 0.88043 1.24864 0.94811 0.95465 0.97369 1.69747 1.04422 1.41297 1.32127 0.87434 0.81275 0.78882 0.85080 1.19750 1.19229 1.18234 1.87937 1.31881 1.74520 1.34958 1.21113 0.85182 0.97262 0.94114 1.19294 0.91214 1.00008 0.95999 1.20771 0.99734 0.98029 0.90963 1.21597 0.96051 0.98399 0.98462 1.20714 0.94131 0.97674 0.97991 1.21576 1.01422 1.04051 0.93168 1.18260 0.93649 1.01764 0.86336 1.65213 0.97015 1.33201 1.26491 1.41218 1.04670 1.10022 1.16030 1.87743 0.99067 1.24872 0.99706 0.87121 0.89956 0.81922 0.87276 0.86724 0.87121 0.84197 0.88624 0.87477 0.87201 0.87945 0.90424 0.92128 0.90778 0.83646 0.85168 0.85262 0.86240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.18 6.90 60.06 0.41 0.59 16 2 N -0.25 2.02 0.05 -395.63 -0.02 2.00 16 3 C -0.05 0.52 7.84 60.06 0.47 0.99 16 4 C -0.03 0.26 6.98 60.07 0.42 0.68 16 5 C -0.04 0.20 3.78 -3.82 -0.01 0.18 16 6 C 0.17 -0.10 1.90 -27.89 -0.05 -0.16 16 7 H 0.07 0.08 6.43 -51.93 -0.33 -0.25 16 8 C -0.56 -2.09 5.88 -34.44 -0.20 -2.30 16 9 H 0.10 0.63 7.31 -52.49 -0.38 0.25 16 10 C 0.09 0.55 3.90 -17.82 -0.07 0.48 16 11 N -0.84 -8.47 13.96 55.43 0.77 -7.70 16 12 Si 0.85 4.10 24.08 -169.99 -4.09 0.01 16 13 H -0.27 -0.76 6.88 56.52 0.39 -0.37 16 14 H -0.27 -2.13 7.11 56.52 0.40 -1.73 16 15 H -0.26 -1.00 6.37 56.52 0.36 -0.64 16 16 O -0.37 0.83 4.46 -35.23 -0.16 0.68 16 17 C 0.10 -0.21 5.09 36.00 0.18 -0.02 16 18 C -0.06 0.09 5.94 -103.93 -0.62 -0.53 16 19 C -0.08 0.19 9.33 -40.00 -0.37 -0.18 16 20 C -0.12 0.31 10.06 -39.07 -0.39 -0.08 16 21 C -0.09 0.15 9.98 -40.00 -0.40 -0.25 16 22 C -0.18 0.11 9.44 -38.89 -0.37 -0.25 16 23 C 0.10 -0.03 6.64 -84.83 -0.56 -0.59 16 24 N -0.32 -0.07 10.42 32.29 0.34 0.26 16 25 N 0.28 0.08 9.06 60.35 0.55 0.62 16 26 N -0.13 -0.05 20.42 60.35 1.23 1.18 16 27 H 0.11 -0.27 5.44 -51.93 -0.28 -0.55 16 28 H 0.08 -0.66 7.79 -51.93 -0.40 -1.07 16 29 H 0.16 -0.42 4.49 -51.93 -0.23 -0.65 16 30 H 0.11 -1.37 8.12 -51.93 -0.42 -1.79 16 31 H 0.11 -1.47 7.86 -51.93 -0.41 -1.88 16 32 H 0.11 -1.21 8.14 -51.93 -0.42 -1.63 16 33 H 0.14 -0.99 4.99 -51.93 -0.26 -1.25 16 34 H 0.10 -1.10 7.77 -51.93 -0.40 -1.51 16 35 H 0.11 -0.97 6.65 -51.93 -0.35 -1.31 16 36 H 0.11 -0.39 3.84 -51.93 -0.20 -0.59 16 37 H 0.10 -0.79 7.77 -51.93 -0.40 -1.19 16 38 H 0.28 2.82 8.31 -40.82 -0.34 2.48 16 39 H 0.06 -0.24 7.86 -51.93 -0.41 -0.64 16 40 H 0.07 -0.03 8.10 -51.93 -0.42 -0.45 16 41 H 0.15 -0.56 6.17 -52.49 -0.32 -0.88 16 42 H 0.13 -0.56 8.06 -52.48 -0.42 -0.98 16 43 H 0.13 -0.44 8.06 -52.48 -0.42 -0.86 16 44 H 0.12 -0.12 7.37 -52.48 -0.39 -0.51 16 LS Contribution 336.99 15.07 5.08 5.08 Total: 0.00 -13.38 336.99 -3.94 -17.32 By element: Atomic # 1 Polarization: -11.94 SS G_CDS: -6.08 Total: -18.01 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -1.56 Total: -1.44 kcal Atomic # 7 Polarization: -6.50 SS G_CDS: 2.87 Total: -3.63 kcal Atomic # 8 Polarization: 0.83 SS G_CDS: -0.16 Total: 0.68 kcal Atomic # 14 Polarization: 4.10 SS G_CDS: -4.09 Total: 0.01 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -13.38 -3.94 -17.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223686825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 241.884 kcal (2) G-P(sol) polarization free energy of solvation -13.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 228.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -17.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 224.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds