Wall clock time and date at job start Tue Mar 31 2020 10:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 109.47185 * 2 1 4 4 C 1.46901 * 109.47320 * 239.99948 * 2 1 3 5 5 C 1.46905 * 109.47041 * 120.00079 * 2 1 3 6 6 C 1.52997 * 109.47314 * 64.35614 * 5 2 1 7 7 H 1.09003 * 109.47124 * 179.69420 * 6 5 2 8 8 C 1.50694 * 109.47215 * 299.69575 * 6 5 2 9 9 H 1.08001 * 120.00448 * 113.99936 * 8 6 5 10 10 C 1.37880 * 120.00244 * 293.99946 * 8 6 5 11 11 N 1.31509 * 120.00297 * 179.97438 * 10 8 6 12 12 Si 1.86808 * 119.99622 * 359.97438 * 10 8 6 13 13 H 1.48501 * 109.46694 * 90.00092 * 12 10 8 14 14 H 1.48494 * 109.46950 * 210.00321 * 12 10 8 15 15 H 1.48504 * 109.46965 * 330.00273 * 12 10 8 16 16 O 1.42905 * 109.46980 * 59.69696 * 6 5 2 17 17 C 1.42891 * 114.00240 * 89.95372 * 16 6 5 18 18 C 1.50698 * 109.47330 * 180.86375 * 17 16 6 19 19 C 1.36376 * 120.17994 * 0.02562 * 18 17 16 20 20 C 1.38908 * 120.35142 * 180.02562 * 19 18 17 21 21 C 1.38947 * 120.70154 * 0.02562 * 20 19 18 22 22 C 1.36339 * 120.34654 * 359.97438 * 21 20 19 23 23 C 1.41814 * 120.18548 * 179.72701 * 18 17 16 24 24 N 1.32507 * 120.33365 * 359.97438 * 23 18 17 25 25 N 1.12395 * 119.99772 * 180.02562 * 24 23 18 26 26 N 8.57202 * 138.81712 * 182.04087 * 2 1 3 27 27 H 1.09003 * 109.47028 * 279.98213 * 1 2 3 28 28 H 1.08998 * 109.47228 * 39.97940 * 1 2 3 29 29 H 1.08997 * 109.46954 * 159.98767 * 1 2 3 30 30 H 1.08995 * 109.47061 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.46792 * 300.00108 * 3 2 1 32 32 H 1.08996 * 109.46738 * 60.00254 * 3 2 1 33 33 H 1.09005 * 109.46655 * 321.07701 * 4 2 1 34 34 H 1.08993 * 109.46902 * 81.07221 * 4 2 1 35 35 H 1.08994 * 109.47544 * 201.07570 * 4 2 1 36 36 H 1.09000 * 109.47429 * 304.35580 * 5 2 1 37 37 H 1.09003 * 109.46648 * 184.35683 * 5 2 1 38 38 H 0.96999 * 120.00159 * 180.02562 * 11 10 8 39 39 H 1.09003 * 109.47604 * 300.86990 * 17 16 6 40 40 H 1.09005 * 109.47091 * 60.86725 * 17 16 6 41 41 H 1.08002 * 119.82902 * 0.02562 * 19 18 17 42 42 H 1.08003 * 119.64968 * 179.97438 * 20 19 18 43 43 H 1.08004 * 119.82333 * 179.97438 * 21 20 19 44 44 H 1.08008 * 120.17798 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9587 1.3850 0.0000 4 6 1.9587 -0.6925 -1.1994 5 6 1.9587 -0.6925 1.1995 6 6 1.5401 -2.1632 1.1459 7 1 1.9081 -2.6782 2.0333 8 6 0.0368 -2.2562 1.0983 9 1 -0.4526 -2.6452 0.2177 10 6 -0.7140 -1.8446 2.1790 11 7 -2.0260 -1.9253 2.1373 12 14 0.1325 -1.1723 3.7026 13 1 0.2942 0.2979 3.5707 14 1 -0.6915 -1.4743 4.9005 15 1 1.4676 -1.8063 3.8474 16 8 2.0924 -2.7733 -0.0224 17 6 3.3847 -3.3490 0.1782 18 6 3.8771 -3.9419 -1.1167 19 6 3.1066 -3.8715 -2.2398 20 6 3.5567 -4.4173 -3.4352 21 6 4.7953 -5.0429 -3.5075 22 6 5.5889 -5.1295 -2.4023 23 6 5.1469 -4.5706 -1.1759 24 7 5.9097 -4.6412 -0.0947 25 7 6.9153 -5.1404 -0.1480 26 7 7.9204 -5.6408 -0.2010 27 1 -0.3633 0.1781 1.0121 28 1 -0.3633 0.7875 -0.6603 29 1 -0.3633 -0.9656 -0.3517 30 1 3.0486 1.3850 0.0005 31 1 1.5953 1.8988 -0.8900 32 1 1.5954 1.8987 0.8900 33 1 1.3260 -1.5562 -1.4040 34 1 1.9295 -0.0112 -2.0497 35 1 2.9839 -1.0240 -1.0345 36 1 1.5330 -0.2258 2.0878 37 1 3.0459 -0.6254 1.2393 38 1 -2.5542 -1.6354 2.8975 39 1 4.0786 -2.5772 0.5115 40 1 3.3207 -4.1311 0.9348 41 1 2.1413 -3.3888 -2.1996 42 1 2.9370 -4.3554 -4.3176 43 1 5.1310 -5.4628 -4.4443 44 1 6.5513 -5.6160 -2.4617 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223686825.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:20:13 Heat of formation + Delta-G solvation = 221.312658 kcal Electronic energy + Delta-G solvation = -26282.202387 eV Core-core repulsion = 22743.628223 eV Total energy + Delta-G solvation = -3538.574163 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.172 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.66377 -42.84141 -40.41737 -38.56825 -37.69009 -35.31224 -33.33492 -31.69316 -31.53866 -29.61398 -29.34383 -27.86761 -27.06514 -25.41367 -24.10919 -23.02866 -22.40192 -20.70939 -19.64150 -19.51080 -19.15272 -18.13331 -17.85969 -17.54837 -17.27450 -16.95175 -16.77885 -16.38556 -16.17085 -15.48834 -15.14577 -15.09319 -14.58378 -14.53514 -14.28266 -13.85767 -13.68923 -13.48116 -13.39438 -13.14460 -12.98116 -12.91520 -12.81839 -12.60144 -12.44117 -12.33777 -12.11192 -11.84793 -11.65223 -11.37260 -11.28738 -10.80867 -10.54833 -9.88953 -8.85527 -8.41953 -6.44181 -0.39328 0.09312 0.36349 1.08242 1.14476 1.31781 1.45647 1.50597 1.67578 2.17893 2.56837 2.76576 2.82382 3.06567 3.17041 3.23960 3.70397 3.73781 3.93171 3.96254 4.05396 4.19367 4.22246 4.27247 4.33772 4.40242 4.44018 4.47951 4.56861 4.59023 4.68734 4.71566 4.77201 4.79832 4.86039 5.01369 5.06789 5.18371 5.22480 5.31800 5.42285 5.46653 5.55320 5.87711 5.93543 6.41781 6.67352 7.13500 8.21552 8.69475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.027 4.027 2 N -0.240 5.240 3 C -0.050 4.050 4 C -0.033 4.033 5 C -0.031 4.031 6 C 0.172 3.828 7 H 0.050 0.950 8 C -0.520 4.520 9 H 0.070 0.930 10 C 0.048 3.952 11 N -0.912 5.912 12 Si 0.880 3.120 13 H -0.234 1.234 14 H -0.319 1.319 15 H -0.237 1.237 16 O -0.366 6.366 17 C 0.100 3.900 18 C -0.059 4.059 19 C -0.077 4.077 20 C -0.121 4.121 21 C -0.094 4.094 22 C -0.188 4.188 23 C 0.083 3.917 24 N -0.321 5.321 25 N 0.275 4.725 26 N -0.138 5.138 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.127 0.873 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.108 0.892 33 H 0.116 0.884 34 H 0.131 0.869 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.145 0.855 38 H 0.270 0.730 39 H 0.087 0.913 40 H 0.054 0.946 41 H 0.158 0.842 42 H 0.151 0.849 43 H 0.144 0.856 44 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.241 10.942 -9.848 17.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 N 0.103 4.897 3 C -0.191 4.191 4 C -0.174 4.174 5 C -0.154 4.154 6 C 0.114 3.886 7 H 0.068 0.932 8 C -0.558 4.558 9 H 0.088 0.912 10 C -0.154 4.154 11 N -0.549 5.549 12 Si 0.706 3.294 13 H -0.159 1.159 14 H -0.248 1.248 15 H -0.161 1.161 16 O -0.285 6.285 17 C 0.024 3.976 18 C -0.065 4.065 19 C -0.095 4.095 20 C -0.141 4.141 21 C -0.113 4.113 22 C -0.212 4.212 23 C -0.020 4.020 24 N -0.220 5.220 25 N 0.280 4.720 26 N -0.126 5.126 27 H 0.100 0.900 28 H 0.135 0.865 29 H 0.146 0.854 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.149 0.851 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.163 0.837 38 H 0.080 0.920 39 H 0.105 0.895 40 H 0.072 0.928 41 H 0.176 0.824 42 H 0.168 0.832 43 H 0.162 0.838 44 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.541 10.873 -9.333 17.789 hybrid contribution -0.194 -0.492 1.339 1.440 sum 10.347 10.381 -7.993 16.695 Atomic orbital electron populations 1.24482 0.76459 1.09187 1.06707 1.45536 1.15180 1.14734 1.14248 1.24345 1.05982 0.79355 1.09381 1.24390 1.05222 1.01564 0.86187 1.24634 1.04214 0.98179 0.88336 1.20247 0.93598 0.87503 0.87274 0.93222 1.20802 0.88672 1.43470 1.02848 0.91207 1.25275 0.94519 0.96322 0.99330 1.69909 1.06327 1.46304 1.32332 0.86948 0.80425 0.81135 0.80887 1.15856 1.24798 1.16070 1.87976 1.32274 1.74641 1.33592 1.21125 0.85428 0.97529 0.93496 1.19368 0.90861 0.99820 0.96445 1.20962 0.99967 0.97842 0.90736 1.21886 0.95824 0.97229 0.99136 1.20966 0.94347 0.97714 0.98262 1.21696 1.01706 1.04288 0.93558 1.18422 0.94220 1.02967 0.86386 1.65208 0.96957 1.32969 1.26842 1.41221 1.04698 1.10136 1.15931 1.87736 0.99315 1.25551 1.00033 0.89985 0.86526 0.85448 0.84888 0.84432 0.87302 0.86602 0.85117 0.86668 0.88241 0.83708 0.92048 0.89521 0.92754 0.82430 0.83161 0.83842 0.86458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 0.29 6.90 127.69 0.88 1.17 16 2 N -0.24 4.47 0.05 ******* -0.07 4.41 16 3 C -0.05 1.33 7.84 127.69 1.00 2.33 16 4 C -0.03 0.69 6.98 127.69 0.89 1.58 16 5 C -0.03 0.37 3.78 86.30 0.33 0.70 16 6 C 0.17 -0.25 1.90 29.85 0.06 -0.19 16 7 H 0.05 0.12 6.43 -2.39 -0.02 0.10 16 8 C -0.52 -4.95 5.88 25.60 0.15 -4.80 16 9 H 0.07 1.10 7.31 -2.91 -0.02 1.08 16 10 C 0.05 0.76 3.90 84.66 0.33 1.09 16 11 N -0.91 -22.41 13.96 21.45 0.30 -22.11 16 12 Si 0.88 9.48 24.08 68.60 1.65 11.13 16 13 H -0.23 -1.03 6.88 99.48 0.68 -0.34 16 14 H -0.32 -6.27 7.11 99.48 0.71 -5.56 16 15 H -0.24 -1.64 6.37 99.48 0.63 -1.00 16 16 O -0.37 1.86 4.46 -148.98 -0.66 1.20 16 17 C 0.10 -0.52 5.09 71.24 0.36 -0.15 16 18 C -0.06 0.23 5.94 -19.42 -0.12 0.11 16 19 C -0.08 0.48 9.33 22.00 0.21 0.69 16 20 C -0.12 0.79 10.06 22.60 0.23 1.02 16 21 C -0.09 0.43 9.98 22.00 0.22 0.64 16 22 C -0.19 0.28 9.44 22.72 0.21 0.50 16 23 C 0.08 -0.07 6.64 40.82 0.27 0.20 16 24 N -0.32 -0.13 10.42 -51.74 -0.54 -0.67 16 25 N 0.28 0.24 9.06 37.02 0.34 0.58 16 26 N -0.14 -0.19 20.42 37.02 0.76 0.57 16 27 H 0.08 -0.33 5.44 -2.39 -0.01 -0.34 16 28 H 0.12 -2.06 7.79 -2.39 -0.02 -2.08 16 29 H 0.13 -0.44 4.49 -2.39 -0.01 -0.45 16 30 H 0.13 -4.03 8.12 -2.39 -0.02 -4.05 16 31 H 0.14 -4.17 7.86 -2.39 -0.02 -4.19 16 32 H 0.11 -2.73 8.14 -2.39 -0.02 -2.75 16 33 H 0.12 -1.75 4.99 -2.38 -0.01 -1.76 16 34 H 0.13 -3.55 7.77 -2.39 -0.02 -3.57 16 35 H 0.11 -2.50 6.65 -2.39 -0.02 -2.52 16 36 H 0.10 -0.90 3.84 -2.39 -0.01 -0.91 16 37 H 0.15 -2.87 7.77 -2.39 -0.02 -2.88 16 38 H 0.27 6.77 8.31 -92.71 -0.77 6.00 16 39 H 0.09 -0.89 7.86 -2.39 -0.02 -0.91 16 40 H 0.05 -0.03 8.10 -2.38 -0.02 -0.05 16 41 H 0.16 -1.41 6.17 -2.91 -0.02 -1.43 16 42 H 0.15 -1.62 8.06 -2.91 -0.02 -1.65 16 43 H 0.14 -1.13 8.06 -2.91 -0.02 -1.16 16 44 H 0.12 -0.20 7.37 -2.91 -0.02 -0.22 16 Total: 0.00 -38.35 336.99 7.71 -30.64 By element: Atomic # 1 Polarization: -31.54 SS G_CDS: 0.92 Total: -30.62 kcal Atomic # 6 Polarization: -0.14 SS G_CDS: 5.02 Total: 4.88 kcal Atomic # 7 Polarization: -18.01 SS G_CDS: 0.78 Total: -17.23 kcal Atomic # 8 Polarization: 1.86 SS G_CDS: -0.66 Total: 1.20 kcal Atomic # 14 Polarization: 9.48 SS G_CDS: 1.65 Total: 11.13 kcal Total: -38.35 7.71 -30.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223686825.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 251.952 kcal (2) G-P(sol) polarization free energy of solvation -38.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 213.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 221.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds