Wall clock time and date at job start Tue Mar 31 2020 10:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35904 * 116.99764 * 2 1 4 4 C 1.38763 * 120.05501 * 0.02562 * 3 2 1 5 5 C 1.38118 * 119.93960 * 180.02562 * 4 3 2 6 6 C 1.38283 * 120.06249 * 359.97438 * 5 4 3 7 7 C 1.38247 * 120.10849 * 0.02729 * 6 5 4 8 8 C 1.38167 * 120.05774 * 359.97438 * 7 6 5 9 9 C 1.50696 * 120.02827 * 179.97438 * 8 7 6 10 10 C 1.52995 * 109.47333 * 265.00106 * 9 8 7 11 11 C 1.53003 * 109.47425 * 179.97438 * 10 9 8 12 12 O 1.42894 * 109.47300 * 180.02562 * 11 10 9 13 13 C 1.42904 * 114.00074 * 180.02562 * 12 11 10 14 14 H 1.09001 * 110.63745 * 333.14355 * 13 12 11 15 15 C 1.55152 * 110.71923 * 210.00215 * 13 12 11 16 16 C 1.54914 * 101.57876 * 206.13428 * 15 13 12 17 17 N 1.47418 * 104.83245 * 37.01100 * 16 15 13 18 18 C 1.36937 * 125.65070 * 155.90942 * 17 16 15 19 19 H 1.08002 * 120.00114 * 342.04630 * 18 17 16 20 20 C 1.38814 * 120.00310 * 162.04237 * 18 17 16 21 21 N 1.31621 * 119.99836 * 156.31410 * 20 18 17 22 22 Si 1.86796 * 119.99991 * 336.31605 * 20 18 17 23 23 H 1.48497 * 109.47291 * 84.66842 * 22 20 18 24 24 H 1.48504 * 109.47027 * 204.67305 * 22 20 18 25 25 H 1.48500 * 109.47031 * 324.66911 * 22 20 18 26 26 C 1.47026 * 108.70477 * 335.86904 * 17 16 15 27 27 H 1.09001 * 109.47633 * 60.00291 * 1 2 3 28 28 H 1.09005 * 109.47251 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47574 * 299.99880 * 1 2 3 30 30 H 1.07997 * 120.02299 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.96527 * 180.25076 * 5 4 3 32 32 H 1.07995 * 119.94922 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.97159 * 179.97438 * 7 6 5 34 34 H 1.08998 * 109.46989 * 25.00636 * 9 8 7 35 35 H 1.09006 * 109.46938 * 145.00703 * 9 8 7 36 36 H 1.08998 * 109.47516 * 300.00208 * 10 9 8 37 37 H 1.08997 * 109.46885 * 60.00258 * 10 9 8 38 38 H 1.08998 * 109.46968 * 300.00574 * 11 10 9 39 39 H 1.08997 * 109.46854 * 60.00269 * 11 10 9 40 40 H 1.09001 * 111.00738 * 324.20177 * 15 13 12 41 41 H 1.08997 * 111.01046 * 88.06225 * 15 13 12 42 42 H 1.09002 * 110.36268 * 155.84721 * 16 15 13 43 43 H 1.08994 * 110.36521 * 278.05700 * 16 15 13 44 44 H 0.96996 * 119.99517 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.88364 * 241.64580 * 26 17 16 46 46 H 1.08995 * 109.87946 * 120.47515 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2912 2.3754 0.0005 5 6 1.9207 3.6048 0.0000 6 6 3.3017 3.6759 -0.0005 7 6 4.0558 2.5173 -0.0011 8 6 3.4310 1.2849 -0.0006 9 6 4.2537 0.0223 -0.0018 10 6 4.4252 -0.4733 -1.4391 11 6 5.2610 -1.7549 -1.4404 12 8 5.4216 -2.2175 -2.7828 13 6 6.1910 -3.4164 -2.8963 14 1 6.8886 -3.5055 -2.0635 15 6 6.9454 -3.4581 -4.2514 16 6 7.1081 -4.9832 -4.4698 17 7 5.8579 -5.5732 -3.9581 18 6 5.3324 -6.7804 -4.3347 19 1 5.6614 -7.2508 -5.2495 20 6 4.3770 -7.3996 -3.5405 21 7 3.5448 -8.2707 -4.0706 22 14 4.2723 -6.9965 -1.7196 23 1 3.4450 -5.7781 -1.5291 24 1 3.6513 -8.1347 -0.9955 25 1 5.6373 -6.7563 -1.1865 26 6 5.2689 -4.6513 -2.9758 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2127 2.3203 0.0014 31 1 1.3337 4.5114 0.0045 32 1 3.7920 4.6382 -0.0005 33 1 5.1343 2.5754 -0.0019 34 1 5.2329 0.2263 0.4315 35 1 3.7473 -0.7418 0.5880 36 1 3.4460 -0.6773 -1.8724 37 1 4.9315 0.2907 -2.0289 38 1 6.2401 -1.5505 -1.0072 39 1 4.7551 -2.5191 -0.8504 40 1 6.3473 -3.0114 -5.0456 41 1 7.9163 -2.9689 -4.1733 42 1 7.2254 -5.2040 -5.5308 43 1 7.9640 -5.3576 -3.9083 44 1 2.8770 -8.7031 -3.5158 45 1 5.2125 -5.1352 -2.0007 46 1 4.2731 -4.3501 -3.3007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224411668.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:28:21 Heat of formation + Delta-G solvation = -34.074592 kcal Electronic energy + Delta-G solvation = -24675.653662 eV Core-core repulsion = 21145.482497 eV Total energy + Delta-G solvation = -3530.171165 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.49877 -38.60926 -37.68077 -36.37801 -34.48296 -32.31508 -30.81119 -30.29760 -29.45817 -27.85548 -27.52032 -25.79254 -24.07803 -22.38100 -22.24386 -21.15818 -20.63462 -20.19252 -18.23097 -17.05970 -16.63414 -16.48309 -15.99151 -15.97835 -15.72729 -15.23971 -14.75347 -14.35417 -14.11656 -13.93659 -13.41243 -13.23754 -13.17797 -13.00623 -12.61267 -12.39631 -12.22107 -12.12746 -11.97210 -11.70978 -11.43582 -11.37006 -11.20650 -11.07083 -11.00768 -10.75646 -10.63368 -10.50383 -10.17993 -9.99061 -9.40806 -9.10796 -9.00283 -8.56718 -8.37017 -7.02328 -5.91522 -3.19598 1.05001 1.19048 3.06421 3.39442 3.46342 3.49032 3.52951 3.88294 4.48199 4.53864 4.59373 4.75384 4.82382 4.91026 4.95289 4.99572 5.05193 5.12976 5.22486 5.27781 5.29324 5.34201 5.37293 5.41760 5.47139 5.52664 5.54762 5.63003 5.70252 5.87617 5.95366 6.02316 6.08943 6.15608 6.23364 6.26004 6.30450 6.34669 6.44632 6.53612 6.58187 6.72238 6.84177 7.16065 7.61317 7.75148 8.34694 8.87092 9.73153 10.21837 11.25069 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017680 B = 0.003082 C = 0.002752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.290126 B = 9083.052252 C =10172.346935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.131 3.869 4 C -0.209 4.209 5 C -0.087 4.087 6 C -0.158 4.158 7 C -0.079 4.079 8 C -0.109 4.109 9 C -0.070 4.070 10 C -0.109 4.109 11 C 0.061 3.939 12 O -0.375 6.375 13 C 0.077 3.923 14 H 0.066 0.934 15 C -0.126 4.126 16 C 0.133 3.867 17 N -0.608 5.608 18 C -0.241 4.241 19 H 0.094 0.906 20 C 0.021 3.979 21 N -0.907 5.907 22 Si 0.886 3.114 23 H -0.285 1.285 24 H -0.303 1.303 25 H -0.281 1.281 26 C 0.102 3.898 27 H 0.055 0.945 28 H 0.102 0.898 29 H 0.053 0.947 30 H 0.127 0.873 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.129 0.871 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.048 0.952 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.053 0.947 43 H 0.026 0.974 44 H 0.263 0.737 45 H 0.024 0.976 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.341 24.809 10.558 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.086 3.914 4 C -0.227 4.227 5 C -0.105 4.105 6 C -0.176 4.176 7 C -0.097 4.097 8 C -0.110 4.110 9 C -0.107 4.107 10 C -0.146 4.146 11 C -0.016 4.016 12 O -0.294 6.294 13 C 0.019 3.981 14 H 0.084 0.916 15 C -0.165 4.165 16 C 0.008 3.992 17 N -0.336 5.336 18 C -0.368 4.368 19 H 0.112 0.888 20 C -0.177 4.177 21 N -0.551 5.551 22 Si 0.718 3.282 23 H -0.213 1.213 24 H -0.232 1.232 25 H -0.208 1.208 26 C -0.023 4.023 27 H 0.074 0.926 28 H 0.120 0.880 29 H 0.072 0.928 30 H 0.145 0.855 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.087 0.913 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.098 0.902 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.073 0.927 45 H 0.042 0.958 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.516 24.494 10.384 26.648 hybrid contribution -0.418 0.146 1.403 1.471 sum -1.934 24.641 11.787 27.383 Atomic orbital electron populations 1.23085 0.78345 1.04289 1.01118 1.86137 1.21322 1.26530 1.88286 1.18918 0.91886 0.84399 0.96228 1.21239 1.00028 0.92414 1.09047 1.20913 0.94730 0.96879 0.97960 1.21036 0.93924 0.98367 1.04269 1.20929 0.99957 0.91009 0.97853 1.19237 0.90535 0.95908 1.05315 1.20342 0.98912 0.94253 0.97219 1.21433 1.01078 0.96070 0.96030 1.22511 0.98541 0.95837 0.84723 1.87895 1.73873 1.41629 1.26010 1.23148 0.92295 0.84532 0.98155 0.91633 1.22861 0.99207 0.97907 0.96499 1.21616 0.89345 0.89889 0.98386 1.44673 1.22024 1.18722 1.48194 1.18673 1.19261 0.94217 1.04677 0.88834 1.24944 0.97363 0.97429 0.97978 1.69863 1.18559 1.31581 1.35081 0.86901 0.77317 0.75906 0.88073 1.21261 1.23172 1.20810 1.22062 0.97139 0.89800 0.93347 0.92592 0.87980 0.92808 0.85534 0.85979 0.85960 0.85328 0.90937 0.90369 0.90779 0.91262 0.93635 0.93401 0.90244 0.91218 0.92833 0.95664 0.92746 0.95828 0.93124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -3.66 9.63 -19.44 -0.19 -3.85 16 3 C 0.13 1.49 6.66 -39.21 -0.26 1.23 16 4 C -0.21 -1.97 9.04 -39.43 -0.36 -2.33 16 5 C -0.09 -0.73 10.04 -39.61 -0.40 -1.13 16 6 C -0.16 -1.33 10.04 -39.56 -0.40 -1.73 16 7 C -0.08 -0.74 9.68 -39.60 -0.38 -1.12 16 8 C -0.11 -1.20 5.15 -104.48 -0.54 -1.74 16 9 C -0.07 -0.76 5.07 -27.89 -0.14 -0.91 16 10 C -0.11 -1.39 5.57 -26.73 -0.15 -1.54 16 11 C 0.06 0.89 5.77 37.16 0.21 1.10 16 12 O -0.38 -6.74 10.07 -35.23 -0.35 -7.10 16 13 C 0.08 1.45 3.45 -24.90 -0.09 1.36 16 14 H 0.07 1.12 7.82 -51.93 -0.41 0.72 16 15 C -0.13 -2.20 6.81 -24.58 -0.17 -2.37 16 16 C 0.13 2.72 7.23 -2.53 -0.02 2.70 16 17 N -0.61 -15.59 3.21 -170.07 -0.55 -16.13 16 18 C -0.24 -7.13 10.56 -15.06 -0.16 -7.29 16 19 H 0.09 2.87 8.06 -52.49 -0.42 2.45 16 20 C 0.02 0.65 5.43 -17.43 -0.09 0.55 16 21 N -0.91 -28.76 13.97 55.49 0.78 -27.99 16 22 Si 0.89 23.69 24.39 -169.99 -4.15 19.54 16 23 H -0.29 -7.46 6.84 56.52 0.39 -7.07 16 24 H -0.30 -8.09 7.11 56.52 0.40 -7.69 16 25 H -0.28 -7.39 6.87 56.52 0.39 -7.00 16 26 C 0.10 2.41 4.93 -3.06 -0.02 2.40 16 27 H 0.06 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.35 7.66 -51.93 -0.40 -0.05 16 30 H 0.13 0.95 6.30 -52.49 -0.33 0.62 16 31 H 0.12 0.74 8.06 -52.48 -0.42 0.32 16 32 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 33 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 35 H 0.08 0.91 7.69 -51.93 -0.40 0.51 16 36 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 38 H 0.05 0.57 8.11 -51.93 -0.42 0.15 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.26 7.89 8.31 -40.82 -0.34 7.55 16 45 H 0.02 0.60 3.53 -51.93 -0.18 0.42 16 46 H 0.05 1.30 8.06 -51.93 -0.42 0.88 16 LS Contribution 367.89 15.07 5.54 5.54 Total: -1.00 -34.24 367.89 -8.48 -42.72 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -7.61 Total: -3.15 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -1.96 Total: -9.59 kcal Atomic # 7 Polarization: -44.35 SS G_CDS: 0.23 Total: -44.12 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: -0.54 Total: -10.95 kcal Atomic # 14 Polarization: 23.69 SS G_CDS: -4.15 Total: 19.54 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.24 -8.48 -42.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224411668.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.644 kcal (2) G-P(sol) polarization free energy of solvation -34.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds