Wall clock time and date at job start Tue Mar 31 2020 10:00:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47441 * 2 1 4 4 C 1.34916 * 117.00357 * 180.02562 * 3 2 1 5 5 N 1.29042 * 119.99713 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00164 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46847 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46871 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47244 * 179.97438 * 9 8 7 11 11 C 1.42907 * 114.00040 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.46706 * 30.00243 * 11 10 9 13 13 C 1.50705 * 109.46859 * 270.00171 * 11 10 9 14 14 H 1.07996 * 120.00315 * 299.79672 * 13 11 10 15 15 C 1.37877 * 119.99438 * 119.79297 * 13 11 10 16 16 N 1.31515 * 119.99636 * 187.31578 * 15 13 11 17 17 Si 1.86805 * 120.00507 * 7.31886 * 15 13 11 18 18 H 1.48493 * 109.47123 * 274.98544 * 17 15 13 19 19 H 1.48507 * 109.46564 * 34.98343 * 17 15 13 20 20 H 1.48498 * 109.47252 * 154.98191 * 17 15 13 21 21 C 1.50697 * 109.46983 * 150.00581 * 11 10 9 22 22 C 1.38227 * 120.00302 * 38.53987 * 21 11 10 23 23 C 1.38237 * 119.99981 * 179.78955 * 22 21 11 24 24 C 1.38233 * 119.99927 * 0.44033 * 23 22 21 25 25 C 1.38233 * 119.99964 * 359.81409 * 24 23 22 26 26 C 1.38230 * 120.00011 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47222 * 300.00883 * 1 2 3 29 29 H 1.09001 * 109.46705 * 60.00264 * 1 2 3 30 30 H 1.08994 * 109.47408 * 239.99032 * 2 1 3 31 31 H 1.09001 * 109.46705 * 119.99735 * 2 1 3 32 32 H 0.96999 * 120.00197 * 0.02562 * 5 4 3 33 33 H 1.08996 * 109.47030 * 60.00138 * 6 4 3 34 34 H 1.09000 * 109.47054 * 299.99636 * 6 4 3 35 35 H 1.09001 * 109.47735 * 60.00359 * 7 6 4 36 36 H 1.09005 * 109.47862 * 299.99758 * 7 6 4 37 37 H 1.08996 * 109.46939 * 60.00373 * 8 7 6 38 38 H 1.08994 * 109.47423 * 300.00201 * 8 7 6 39 39 H 1.09009 * 109.46790 * 60.00150 * 9 8 7 40 40 H 1.08994 * 109.47281 * 300.00551 * 9 8 7 41 41 H 0.97001 * 120.00177 * 179.97438 * 16 15 13 42 42 H 1.08000 * 119.99979 * 359.97438 * 22 21 11 43 43 H 1.08003 * 120.00172 * 180.27146 * 23 22 21 44 44 H 1.08004 * 120.00230 * 179.83553 * 24 23 22 45 45 H 1.08001 * 119.99703 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00029 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3439 1.5240 -0.0005 5 7 4.1299 0.5006 -0.0005 6 6 3.9200 2.9166 -0.0012 7 6 5.4478 2.8365 -0.0010 8 6 6.0326 4.2503 -0.0023 9 6 7.5606 4.1702 -0.0016 10 8 8.1068 5.4907 -0.0033 11 6 9.5353 5.5288 -0.0034 12 1 9.9222 4.6481 -0.5161 13 6 10.0374 5.5440 1.4175 14 1 9.7577 6.3493 2.0805 15 6 10.8539 4.5298 1.8709 16 7 11.1750 4.4639 3.1446 17 14 11.5041 3.2492 0.6763 18 1 10.4969 2.1708 0.5101 19 1 11.7676 3.8876 -0.6384 20 1 12.7648 2.6716 1.2076 21 6 10.0046 6.7713 -0.7154 22 6 9.3203 7.9612 -0.5528 23 6 9.7534 9.1019 -1.2025 24 6 10.8655 9.0506 -2.0219 25 6 11.5468 7.8594 -2.1886 26 6 11.1163 6.7197 -1.5355 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8900 32 1 3.7592 -0.3957 -0.0005 33 1 3.5844 3.4490 0.8888 34 1 3.5837 3.4485 -0.8912 35 1 5.7839 2.3039 -0.8908 36 1 5.7838 2.3047 0.8892 37 1 5.6967 4.7832 0.8872 38 1 5.6968 4.7816 -0.8927 39 1 7.8969 3.6371 -0.8909 40 1 7.8961 3.6390 0.8890 41 1 11.7491 3.7501 3.4638 42 1 8.4490 8.0004 0.0841 43 1 9.2213 10.0327 -1.0721 44 1 11.2024 9.9412 -2.5316 45 1 12.4159 7.8194 -2.8285 46 1 11.6483 5.7889 -1.6660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224965213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:59 Heat of formation + Delta-G solvation = -59.386481 kcal Electronic energy + Delta-G solvation = -24041.747592 eV Core-core repulsion = 20510.478821 eV Total energy + Delta-G solvation = -3531.268771 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.04850 -38.64401 -36.95348 -35.54523 -33.31762 -32.51595 -31.75749 -31.06667 -30.18327 -28.96343 -27.01199 -24.70577 -23.17281 -22.55261 -21.82212 -20.90178 -20.15907 -19.91629 -18.42895 -17.15149 -16.69883 -16.22395 -15.66886 -15.56365 -15.50037 -14.76062 -14.41701 -14.07250 -13.85823 -13.56153 -13.29892 -13.17204 -12.96016 -12.77476 -12.68662 -12.32709 -12.12178 -11.92924 -11.88219 -11.47479 -11.29512 -11.24059 -11.08752 -10.97838 -10.60975 -10.42616 -10.34535 -10.12040 -9.93752 -9.77053 -9.73998 -9.37716 -8.74216 -8.42315 -8.21350 -7.76403 -6.23365 -4.24787 2.09857 2.14154 2.19929 2.69003 3.18037 3.24300 3.27104 4.25924 4.27460 4.41406 4.44694 4.48186 4.66319 4.73077 5.06144 5.13985 5.16943 5.31029 5.31304 5.39681 5.53097 5.55494 5.58992 5.61608 5.70953 5.84879 5.95163 6.05021 6.06573 6.15426 6.22056 6.27595 6.33852 6.39561 6.43658 6.60495 6.67891 6.72278 6.77341 6.81654 7.14145 7.24855 7.43872 7.51069 7.74452 8.12658 8.24291 8.50676 8.90202 9.38860 10.89027 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002827 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.504851 B = 9901.129712 C =11118.936393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.371 6.371 4 C 0.352 3.648 5 N -0.738 5.738 6 C -0.049 4.049 7 C -0.098 4.098 8 C -0.117 4.117 9 C 0.071 3.929 10 O -0.395 6.395 11 C 0.213 3.787 12 H 0.031 0.969 13 C -0.520 4.520 14 H 0.081 0.919 15 C 0.080 3.920 16 N -0.882 5.882 17 Si 0.864 3.136 18 H -0.270 1.270 19 H -0.262 1.262 20 H -0.283 1.283 21 C -0.032 4.032 22 C -0.100 4.100 23 C -0.127 4.127 24 C -0.147 4.147 25 C -0.124 4.124 26 C -0.128 4.128 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.334 0.666 33 H 0.096 0.904 34 H 0.094 0.906 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.070 0.930 38 H 0.064 0.936 39 H 0.029 0.971 40 H 0.050 0.950 41 H 0.267 0.733 42 H 0.122 0.878 43 H 0.111 0.889 44 H 0.109 0.891 45 H 0.111 0.889 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.388 -4.441 -8.959 18.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.026 4.026 3 O -0.275 6.275 4 C 0.123 3.877 5 N -0.383 5.383 6 C -0.087 4.087 7 C -0.136 4.136 8 C -0.155 4.155 9 C -0.006 4.006 10 O -0.315 6.315 11 C 0.157 3.843 12 H 0.049 0.951 13 C -0.557 4.557 14 H 0.099 0.901 15 C -0.125 4.125 16 N -0.519 5.519 17 Si 0.691 3.309 18 H -0.195 1.195 19 H -0.188 1.188 20 H -0.209 1.209 21 C -0.033 4.033 22 C -0.118 4.118 23 C -0.145 4.145 24 C -0.165 4.165 25 C -0.143 4.143 26 C -0.146 4.146 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.152 0.848 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.089 0.911 36 H 0.093 0.907 37 H 0.089 0.911 38 H 0.083 0.917 39 H 0.047 0.953 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.129 0.871 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -14.692 -4.259 -8.809 17.652 hybrid contribution -0.119 -1.749 -0.382 1.795 sum -14.811 -6.009 -9.190 18.437 Atomic orbital electron populations 1.21730 0.92125 1.02914 1.03739 1.22682 0.96696 0.82087 1.01176 1.85986 1.24356 1.30095 1.87104 1.25204 0.77750 0.97357 0.87369 1.69598 1.40401 1.02497 1.25769 1.20465 0.96590 0.87144 1.04548 1.21270 0.91350 0.96872 1.04133 1.21521 0.95038 0.96140 1.02752 1.22145 0.92583 0.86372 0.99476 1.87778 1.22716 1.25788 1.95216 1.19035 0.79188 0.90843 0.95226 0.95124 1.21276 1.29954 1.10088 0.94399 0.90053 1.25095 0.95525 0.96952 0.94893 1.69898 1.35652 1.32930 1.13435 0.87076 0.79473 0.82312 0.82055 1.19528 1.18751 1.20861 1.20201 0.94120 0.96532 0.92437 1.20953 0.99896 0.91889 0.99051 1.21059 0.97238 0.97977 0.98253 1.20886 0.97261 0.97367 1.00985 1.20926 0.99701 0.93145 1.00479 1.20974 0.97513 0.98402 0.97759 0.90355 0.91310 0.91357 0.92173 0.92108 0.84752 0.88555 0.88729 0.91090 0.90693 0.91124 0.91744 0.95294 0.93150 0.92247 0.85952 0.87046 0.87256 0.87076 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 10.28 37.16 0.38 -0.46 16 2 C 0.05 0.38 5.53 37.16 0.21 0.59 16 3 O -0.37 -3.96 10.14 -16.47 -0.17 -4.13 16 4 C 0.35 4.12 7.90 -13.45 -0.11 4.01 16 5 N -0.74 -9.39 12.62 32.47 0.41 -8.98 16 6 C -0.05 -0.53 5.81 -27.88 -0.16 -0.70 16 7 C -0.10 -1.31 4.44 -26.73 -0.12 -1.43 16 8 C -0.12 -1.77 5.58 -26.73 -0.15 -1.92 16 9 C 0.07 1.41 5.74 37.16 0.21 1.62 16 10 O -0.39 -9.00 9.24 -35.23 -0.33 -9.32 16 11 C 0.21 5.17 2.28 -29.03 -0.07 5.11 16 12 H 0.03 0.75 4.29 -51.93 -0.22 0.53 16 13 C -0.52 -14.59 9.16 -34.44 -0.32 -14.90 16 14 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 15 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 16 N -0.88 -26.38 13.96 55.43 0.77 -25.61 16 17 Si 0.86 20.86 26.96 -169.99 -4.58 16.28 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 19 H -0.26 -6.00 5.90 56.52 0.33 -5.66 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 21 C -0.03 -0.73 4.96 -104.63 -0.52 -1.25 16 22 C -0.10 -2.05 9.36 -39.59 -0.37 -2.42 16 23 C -0.13 -2.22 10.05 -39.58 -0.40 -2.62 16 24 C -0.15 -2.43 10.05 -39.59 -0.40 -2.82 16 25 C -0.12 -2.18 10.05 -39.59 -0.40 -2.58 16 26 C -0.13 -2.63 9.67 -39.58 -0.38 -3.02 16 27 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.43 7.78 -51.93 -0.40 0.02 16 31 H 0.06 0.45 7.78 -51.93 -0.40 0.04 16 32 H 0.33 3.64 6.64 -40.82 -0.27 3.37 16 33 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 0.98 8.06 -51.93 -0.42 0.56 16 36 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 37 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 38 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.03 0.55 8.08 -51.92 -0.42 0.13 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.12 2.51 7.73 -52.49 -0.41 2.10 16 43 H 0.11 1.62 8.06 -52.48 -0.42 1.19 16 44 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 46 H 0.11 2.29 7.16 -52.49 -0.38 1.92 16 LS Contribution 380.63 15.07 5.74 5.74 Total: -1.00 -31.59 380.63 -8.45 -40.04 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -7.62 Total: 6.61 kcal Atomic # 6 Polarization: -17.95 SS G_CDS: -2.68 Total: -20.63 kcal Atomic # 7 Polarization: -35.77 SS G_CDS: 1.18 Total: -34.58 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.49 Total: -13.45 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.58 Total: 16.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.59 -8.45 -40.04 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224965213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.347 kcal (2) G-P(sol) polarization free energy of solvation -31.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds