Wall clock time and date at job start Tue Mar 31 2020 10:00:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47441 * 2 1 4 4 C 1.34916 * 117.00357 * 180.02562 * 3 2 1 5 5 N 1.29042 * 119.99713 * 359.97438 * 4 3 2 6 6 C 1.50704 * 120.00164 * 179.97438 * 4 3 2 7 7 C 1.52996 * 109.46847 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46871 * 179.97438 * 7 6 4 9 9 C 1.53003 * 109.47260 * 179.97438 * 8 7 6 10 10 O 1.42898 * 109.47244 * 179.97438 * 9 8 7 11 11 C 1.42907 * 114.00040 * 180.02562 * 10 9 8 12 12 H 1.08999 * 109.46706 * 30.00243 * 11 10 9 13 13 C 1.50705 * 109.46859 * 270.00171 * 11 10 9 14 14 H 1.07996 * 120.00315 * 299.79672 * 13 11 10 15 15 C 1.37877 * 119.99438 * 119.79297 * 13 11 10 16 16 N 1.31515 * 119.99636 * 187.31578 * 15 13 11 17 17 Si 1.86805 * 120.00507 * 7.31886 * 15 13 11 18 18 H 1.48493 * 109.47123 * 274.98544 * 17 15 13 19 19 H 1.48507 * 109.46564 * 34.98343 * 17 15 13 20 20 H 1.48498 * 109.47252 * 154.98191 * 17 15 13 21 21 C 1.50697 * 109.46983 * 150.00581 * 11 10 9 22 22 C 1.38227 * 120.00302 * 38.53987 * 21 11 10 23 23 C 1.38237 * 119.99981 * 179.78955 * 22 21 11 24 24 C 1.38233 * 119.99927 * 0.44033 * 23 22 21 25 25 C 1.38233 * 119.99964 * 359.81409 * 24 23 22 26 26 C 1.38230 * 120.00011 * 359.97438 * 25 24 23 27 27 H 1.08997 * 109.47349 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47222 * 300.00883 * 1 2 3 29 29 H 1.09001 * 109.46705 * 60.00264 * 1 2 3 30 30 H 1.08994 * 109.47408 * 239.99032 * 2 1 3 31 31 H 1.09001 * 109.46705 * 119.99735 * 2 1 3 32 32 H 0.96999 * 120.00197 * 0.02562 * 5 4 3 33 33 H 1.08996 * 109.47030 * 60.00138 * 6 4 3 34 34 H 1.09000 * 109.47054 * 299.99636 * 6 4 3 35 35 H 1.09001 * 109.47735 * 60.00359 * 7 6 4 36 36 H 1.09005 * 109.47862 * 299.99758 * 7 6 4 37 37 H 1.08996 * 109.46939 * 60.00373 * 8 7 6 38 38 H 1.08994 * 109.47423 * 300.00201 * 8 7 6 39 39 H 1.09009 * 109.46790 * 60.00150 * 9 8 7 40 40 H 1.08994 * 109.47281 * 300.00551 * 9 8 7 41 41 H 0.97001 * 120.00177 * 179.97438 * 16 15 13 42 42 H 1.08000 * 119.99979 * 359.97438 * 22 21 11 43 43 H 1.08003 * 120.00172 * 180.27146 * 23 22 21 44 44 H 1.08004 * 120.00230 * 179.83553 * 24 23 22 45 45 H 1.08001 * 119.99703 * 180.02562 * 25 24 23 46 46 H 1.08002 * 120.00029 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3439 1.5240 -0.0005 5 7 4.1299 0.5006 -0.0005 6 6 3.9200 2.9166 -0.0012 7 6 5.4478 2.8365 -0.0010 8 6 6.0326 4.2503 -0.0023 9 6 7.5606 4.1702 -0.0016 10 8 8.1068 5.4907 -0.0033 11 6 9.5353 5.5288 -0.0034 12 1 9.9222 4.6481 -0.5161 13 6 10.0374 5.5440 1.4175 14 1 9.7577 6.3493 2.0805 15 6 10.8539 4.5298 1.8709 16 7 11.1750 4.4639 3.1446 17 14 11.5041 3.2492 0.6763 18 1 10.4969 2.1708 0.5101 19 1 11.7676 3.8876 -0.6384 20 1 12.7648 2.6716 1.2076 21 6 10.0046 6.7713 -0.7154 22 6 9.3203 7.9612 -0.5528 23 6 9.7534 9.1019 -1.2025 24 6 10.8655 9.0506 -2.0219 25 6 11.5468 7.8594 -2.1886 26 6 11.1163 6.7197 -1.5355 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8898 31 1 1.8932 -0.5138 0.8900 32 1 3.7592 -0.3957 -0.0005 33 1 3.5844 3.4490 0.8888 34 1 3.5837 3.4485 -0.8912 35 1 5.7839 2.3039 -0.8908 36 1 5.7838 2.3047 0.8892 37 1 5.6967 4.7832 0.8872 38 1 5.6968 4.7816 -0.8927 39 1 7.8969 3.6371 -0.8909 40 1 7.8961 3.6390 0.8890 41 1 11.7491 3.7501 3.4638 42 1 8.4490 8.0004 0.0841 43 1 9.2213 10.0327 -1.0721 44 1 11.2024 9.9412 -2.5316 45 1 12.4159 7.8194 -2.8285 46 1 11.6483 5.7889 -1.6660 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224965213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:58 Heat of formation + Delta-G solvation = -79.930222 kcal Electronic energy + Delta-G solvation = -24042.638435 eV Core-core repulsion = 20510.478821 eV Total energy + Delta-G solvation = -3532.159614 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.85731 -40.20067 -38.54610 -36.66364 -34.93033 -34.04779 -32.64086 -32.39785 -31.63028 -30.15679 -28.89829 -25.84389 -24.57665 -23.78352 -23.21790 -22.20266 -21.67742 -20.89054 -19.35429 -19.22638 -17.68961 -17.45818 -17.41466 -16.81312 -16.48722 -16.30556 -16.01938 -15.35356 -15.23697 -14.90503 -14.73452 -14.29858 -14.24696 -14.11725 -13.75164 -13.66266 -13.42373 -13.21789 -12.99545 -12.84829 -12.60972 -12.52600 -12.29965 -12.22041 -11.98722 -11.87508 -11.81463 -11.75256 -11.44739 -11.22422 -10.86055 -10.84871 -10.60442 -10.18723 -9.67057 -9.38602 -8.42086 -6.49089 0.62821 0.67186 1.24634 1.25811 1.31429 1.34998 1.92704 2.21261 2.77068 3.11472 3.19113 3.45817 3.86551 3.92309 4.04332 4.06810 4.14165 4.19228 4.26963 4.30222 4.36823 4.40914 4.43125 4.52355 4.65793 4.70402 4.76945 4.80955 4.83678 4.88131 4.92866 4.98526 5.06976 5.12298 5.24852 5.29951 5.32671 5.37105 5.42136 5.51936 5.63173 5.71345 5.75907 5.93165 6.10623 6.29125 6.53749 6.72095 7.20337 7.28182 8.74593 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.002827 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.504851 B = 9901.129712 C =11118.936393 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.040 3.960 3 O -0.379 6.379 4 C 0.353 3.647 5 N -0.765 5.765 6 C -0.047 4.047 7 C -0.087 4.087 8 C -0.105 4.105 9 C 0.062 3.938 10 O -0.403 6.403 11 C 0.219 3.781 12 H 0.031 0.969 13 C -0.527 4.527 14 H 0.031 0.969 15 C 0.026 3.974 16 N -0.932 5.932 17 Si 0.923 3.077 18 H -0.261 1.261 19 H -0.240 1.240 20 H -0.276 1.276 21 C -0.070 4.070 22 C -0.120 4.120 23 C -0.123 4.123 24 C -0.134 4.134 25 C -0.120 4.120 26 C -0.147 4.147 27 H 0.099 0.901 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.340 0.660 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.067 0.933 36 H 0.054 0.946 37 H 0.068 0.932 38 H 0.083 0.917 39 H 0.039 0.961 40 H 0.020 0.980 41 H 0.270 0.730 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.154 0.846 45 H 0.148 0.852 46 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.851 -3.785 -11.965 20.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 O -0.282 6.282 4 C 0.125 3.875 5 N -0.411 5.411 6 C -0.085 4.085 7 C -0.125 4.125 8 C -0.142 4.142 9 C -0.014 4.014 10 O -0.323 6.323 11 C 0.163 3.837 12 H 0.048 0.952 13 C -0.564 4.564 14 H 0.050 0.950 15 C -0.173 4.173 16 N -0.571 5.571 17 Si 0.745 3.255 18 H -0.186 1.186 19 H -0.164 1.164 20 H -0.201 1.201 21 C -0.070 4.070 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.138 4.138 26 C -0.165 4.165 27 H 0.118 0.882 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.159 0.841 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.086 0.914 36 H 0.073 0.927 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.057 0.943 40 H 0.039 0.961 41 H 0.080 0.920 42 H 0.125 0.875 43 H 0.162 0.838 44 H 0.171 0.829 45 H 0.165 0.835 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -15.183 -3.596 -11.829 19.580 hybrid contribution -0.053 -1.843 0.558 1.926 sum -15.235 -5.439 -11.271 19.716 Atomic orbital electron populations 1.21759 0.90450 1.04284 1.03598 1.22967 0.98017 0.80914 1.01630 1.85981 1.23567 1.31832 1.86860 1.25254 0.78299 0.97329 0.86597 1.69621 1.41209 1.03246 1.27053 1.20446 0.94393 0.87324 1.06301 1.21101 0.93354 0.95102 1.02976 1.21448 0.91547 0.97628 1.03590 1.22411 0.95606 0.84943 0.98482 1.87750 1.21925 1.27496 1.95099 1.18858 0.79554 0.92276 0.92996 0.95169 1.21401 1.30208 1.08672 0.96165 0.95026 1.25916 0.95672 0.99211 0.96535 1.70039 1.37134 1.34374 1.15571 0.86125 0.79068 0.79645 0.80620 1.18607 1.16390 1.20130 1.20188 0.95958 0.96209 0.94680 1.20984 1.00006 0.92825 1.00053 1.21427 0.97620 0.97931 0.97133 1.21414 0.95792 0.98513 0.99494 1.21351 1.00450 0.92275 0.99683 1.21117 0.97127 0.99815 0.98440 0.88245 0.91557 0.91347 0.91549 0.91861 0.84068 0.87283 0.86473 0.91450 0.92679 0.91313 0.89790 0.94273 0.96120 0.92031 0.87482 0.83807 0.82857 0.83473 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.04 0.57 5.53 71.98 0.40 0.97 16 3 O -0.38 -7.61 10.14 -81.85 -0.83 -8.44 16 4 C 0.35 7.93 7.90 88.52 0.70 8.63 16 5 N -0.76 -19.15 12.62 -166.06 -2.09 -21.24 16 6 C -0.05 -0.95 5.81 29.85 0.17 -0.78 16 7 C -0.09 -2.31 4.44 30.59 0.14 -2.17 16 8 C -0.10 -3.15 5.58 30.60 0.17 -2.98 16 9 C 0.06 2.53 5.74 71.98 0.41 2.94 16 10 O -0.40 -19.00 9.24 -148.98 -1.38 -20.38 16 11 C 0.22 11.01 2.28 29.10 0.07 11.07 16 12 H 0.03 1.49 4.29 -2.39 -0.01 1.48 16 13 C -0.53 -31.27 9.16 25.60 0.23 -31.03 16 14 H 0.03 2.12 8.06 -2.91 -0.02 2.09 16 15 C 0.03 1.55 5.47 84.65 0.46 2.01 16 16 N -0.93 -58.49 13.96 21.45 0.30 -58.19 16 17 Si 0.92 43.80 26.96 68.60 1.85 45.65 16 18 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.24 -10.45 5.90 99.48 0.59 -9.87 16 20 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 21 C -0.07 -3.17 4.96 -19.87 -0.10 -3.27 16 22 C -0.12 -4.96 9.36 22.27 0.21 -4.75 16 23 C -0.12 -3.98 10.05 22.27 0.22 -3.76 16 24 C -0.13 -3.85 10.05 22.27 0.22 -3.62 16 25 C -0.12 -3.77 10.05 22.27 0.22 -3.55 16 26 C -0.15 -5.84 9.67 22.27 0.22 -5.62 16 27 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 28 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.07 0.87 7.78 -2.39 -0.02 0.85 16 31 H 0.06 0.87 7.78 -2.39 -0.02 0.85 16 32 H 0.34 7.29 6.64 -92.71 -0.62 6.68 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.07 1.83 8.06 -2.39 -0.02 1.81 16 36 H 0.05 1.67 8.06 -2.38 -0.02 1.65 16 37 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.04 1.49 8.08 -2.38 -0.02 1.47 16 40 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 42 H 0.11 4.58 7.73 -2.91 -0.02 4.56 16 43 H 0.14 3.64 8.06 -2.91 -0.02 3.62 16 44 H 0.15 3.11 8.06 -2.91 -0.02 3.08 16 45 H 0.15 3.54 8.06 -2.91 -0.02 3.51 16 46 H 0.11 4.34 7.16 -2.91 -0.02 4.32 16 Total: -1.00 -73.02 380.63 2.56 -70.47 By element: Atomic # 1 Polarization: 28.48 SS G_CDS: 0.22 Total: 28.70 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 4.49 Total: -36.57 kcal Atomic # 7 Polarization: -77.64 SS G_CDS: -1.80 Total: -79.43 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -2.21 Total: -28.82 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 1.85 Total: 45.65 kcal Total: -73.02 2.56 -70.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224965213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.465 kcal (2) G-P(sol) polarization free energy of solvation -73.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds