Wall clock time and date at job start Tue Mar 31 2020 09:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42904 * 109.47651 * 2 1 4 4 C 1.35892 * 117.00326 * 179.97438 * 3 2 1 5 5 C 1.38734 * 120.05681 * 179.97438 * 4 3 2 6 6 C 1.38148 * 119.94638 * 180.02562 * 5 4 3 7 7 C 1.38268 * 120.05182 * 0.02665 * 6 5 4 8 8 C 1.50705 * 119.93964 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46748 * 90.00305 * 8 7 6 10 10 O 1.42906 * 109.46646 * 180.02562 * 9 8 7 11 11 C 1.42903 * 113.99676 * 180.02562 * 10 9 8 12 12 C 1.53514 * 114.17081 * 149.99722 * 11 10 9 13 13 N 1.47483 * 87.92777 * 87.61994 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.38259 * 120.11469 * 0.25354 * 7 6 5 25 25 C 1.38152 * 120.05677 * 359.44545 * 24 7 6 26 26 H 1.09003 * 109.46739 * 299.99816 * 1 2 3 27 27 H 1.09001 * 109.47327 * 59.99651 * 1 2 3 28 28 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47240 * 240.00258 * 2 1 3 30 30 H 1.09001 * 109.47327 * 120.00349 * 2 1 3 31 31 H 1.07995 * 120.02511 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.96945 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47253 * 330.00089 * 8 7 6 34 34 H 1.08994 * 109.46969 * 210.00099 * 8 7 6 35 35 H 1.09000 * 109.47420 * 59.99886 * 9 8 7 36 36 H 1.08994 * 109.47218 * 299.99642 * 9 8 7 37 37 H 1.08997 * 113.25538 * 17.04389 * 11 10 9 38 38 H 1.09000 * 113.47331 * 332.85672 * 12 11 10 39 39 H 1.08997 * 113.47627 * 202.38796 * 12 11 10 40 40 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 41 41 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 44 44 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 45 45 H 1.08002 * 119.97451 * 179.70744 * 24 7 6 46 46 H 1.07994 * 120.03065 * 180.25524 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2551 2.9850 0.0001 7 6 6.0962 1.8876 0.0000 8 6 7.5903 2.0851 -0.0005 9 6 8.0963 2.1521 1.4418 10 8 9.5130 2.3400 1.4413 11 6 10.0897 2.4158 2.7466 12 6 11.5336 1.9008 2.8267 13 7 11.9814 3.2586 2.4649 14 6 13.1533 3.6550 3.2570 15 6 13.7293 4.9304 2.6982 16 1 13.2710 5.3996 1.8402 17 6 14.8422 5.4981 3.2818 18 7 15.4007 4.9266 4.3263 19 14 15.5566 7.0787 2.5886 20 1 16.7413 7.4795 3.3894 21 1 15.9633 6.8609 1.1771 22 1 14.5328 8.1527 2.6486 23 6 10.7372 3.7696 3.0698 24 6 5.5690 0.6095 -0.0053 25 6 4.1998 0.4258 0.0009 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2286 3.6641 -0.0004 32 1 5.6693 3.9824 0.0001 33 1 7.8337 3.0149 -0.5147 34 1 8.0669 1.2503 -0.5143 35 1 7.8529 1.2223 1.9559 36 1 7.6198 2.9869 1.9556 37 1 9.4350 2.0326 3.5292 38 1 11.7694 1.1504 2.0721 39 1 11.8317 1.5983 3.8305 40 1 13.9051 2.8668 3.2130 41 1 12.8545 3.8145 4.2931 42 1 16.1838 5.3257 4.7366 43 1 10.8228 3.9658 4.1386 44 1 10.2981 4.6030 2.5214 45 1 6.2281 -0.2461 -0.0101 46 1 3.7884 -0.5727 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225068208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:43 Heat of formation + Delta-G solvation = -26.838543 kcal Electronic energy + Delta-G solvation = -23473.305421 eV Core-core repulsion = 19943.448035 eV Total energy + Delta-G solvation = -3529.857386 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.48998 -39.52567 -38.24633 -36.50069 -33.26940 -32.72109 -31.79758 -31.17783 -29.19883 -27.78376 -25.36751 -25.00058 -24.47398 -23.39846 -22.27439 -21.66633 -20.95610 -19.36119 -18.60740 -16.63861 -16.50143 -16.41155 -16.24953 -15.57798 -15.35351 -15.18636 -14.66078 -14.45911 -13.91512 -13.85648 -13.79877 -13.68513 -13.38446 -13.24299 -13.01849 -12.40308 -12.31873 -12.10731 -11.97348 -11.73849 -11.62562 -11.47458 -11.10933 -11.05176 -10.92902 -10.87488 -10.59911 -10.46950 -10.16622 -9.59718 -9.28236 -9.21382 -9.08994 -8.38547 -8.35689 -7.74412 -5.99401 -4.00032 1.06682 1.12435 2.81952 3.37294 3.40160 3.40430 3.44528 3.78433 4.40905 4.44454 4.46856 4.56419 4.62373 4.75465 4.79381 4.87252 4.95340 4.99537 5.05224 5.12032 5.26236 5.30153 5.32802 5.35184 5.36349 5.40943 5.47713 5.55898 5.68801 5.81893 5.86575 5.99689 6.01556 6.07030 6.07934 6.21922 6.30774 6.43367 6.45854 6.50413 6.73625 7.09077 7.21565 7.53329 7.72071 7.92672 8.17398 8.52989 9.07685 9.63778 11.11728 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.001854 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.185678 B =15101.143485 C =15485.226870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.124 3.876 5 C -0.151 4.151 6 C -0.073 4.073 7 C -0.115 4.115 8 C -0.075 4.075 9 C 0.066 3.934 10 O -0.350 6.350 11 C 0.056 3.944 12 C -0.007 4.007 13 N -0.455 5.455 14 C 0.156 3.844 15 C -0.503 4.503 16 H 0.063 0.937 17 C 0.053 3.947 18 N -0.902 5.902 19 Si 0.900 3.100 20 H -0.288 1.288 21 H -0.276 1.276 22 H -0.277 1.277 23 C -0.008 4.008 24 C -0.074 4.074 25 C -0.208 4.208 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.045 0.955 36 H 0.048 0.952 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.069 0.931 40 H 0.028 0.972 41 H 0.002 0.998 42 H 0.261 0.739 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.725 -11.532 -7.082 31.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.079 3.921 5 C -0.169 4.169 6 C -0.091 4.091 7 C -0.115 4.115 8 C -0.112 4.112 9 C -0.011 4.011 10 O -0.269 6.269 11 C -0.003 4.003 12 C -0.137 4.137 13 N -0.178 5.178 14 C 0.030 3.970 15 C -0.542 4.542 16 H 0.081 0.919 17 C -0.148 4.148 18 N -0.542 5.542 19 Si 0.728 3.272 20 H -0.214 1.214 21 H -0.201 1.201 22 H -0.203 1.203 23 C -0.138 4.138 24 C -0.092 4.092 25 C -0.227 4.227 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.148 0.852 32 H 0.150 0.850 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.046 0.954 41 H 0.020 0.980 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.097 0.903 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -28.399 -11.177 -7.811 31.503 hybrid contribution 0.365 0.408 0.922 1.072 sum -28.034 -10.769 -6.890 30.812 Atomic orbital electron populations 1.21778 0.92716 1.02890 1.03568 1.22777 0.95888 0.82016 1.01417 1.86063 1.19176 1.29278 1.88725 1.19006 0.82162 0.94234 0.96736 1.20437 0.95220 0.94806 1.06448 1.20958 0.92000 0.99039 0.97126 1.19697 0.95336 0.93083 1.03386 1.20406 0.90122 1.04215 0.96502 1.22484 0.82397 0.99648 0.96540 1.87965 1.19350 1.93156 1.26407 1.23293 0.94179 0.98143 0.84635 1.24035 0.92714 0.96573 1.00349 1.69030 1.02194 1.01267 1.45344 1.20294 0.88400 0.97061 0.91275 1.21089 1.11534 1.07430 1.14101 0.91883 1.25010 0.96820 0.97858 0.95078 1.69950 1.22173 1.40054 1.22000 0.86525 0.78331 0.83309 0.79044 1.21375 1.20133 1.20281 1.24219 0.93545 0.97246 0.98758 1.20892 0.94211 0.96904 0.97204 1.21216 0.94314 0.97959 1.09174 0.91485 0.91500 0.90346 0.92046 0.92024 0.85202 0.85010 0.89900 0.90162 0.93636 0.93383 0.91215 0.90141 0.91273 0.95359 0.98007 0.92930 0.91308 0.90308 0.85599 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.67 10.28 37.15 0.38 -0.29 16 2 C 0.05 0.33 5.46 37.15 0.20 0.53 16 3 O -0.32 -2.96 10.14 -19.40 -0.20 -3.15 16 4 C 0.12 1.21 6.69 -39.21 -0.26 0.95 16 5 C -0.15 -1.44 9.99 -39.43 -0.39 -1.84 16 6 C -0.07 -0.70 9.69 -39.60 -0.38 -1.08 16 7 C -0.11 -1.13 5.13 -104.60 -0.54 -1.67 16 8 C -0.08 -0.80 5.71 -27.88 -0.16 -0.96 16 9 C 0.07 0.81 5.76 37.16 0.21 1.02 16 10 O -0.35 -5.70 10.39 -35.23 -0.37 -6.07 16 11 C 0.06 0.92 4.66 -26.20 -0.12 0.80 16 12 C -0.01 -0.13 7.52 -7.53 -0.06 -0.19 16 13 N -0.46 -10.55 6.32 -246.08 -1.55 -12.10 16 14 C 0.16 4.22 4.57 -4.98 -0.02 4.20 16 15 C -0.50 -14.85 9.39 -34.44 -0.32 -15.18 16 16 H 0.06 1.87 7.81 -52.49 -0.41 1.46 16 17 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 18 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16 19 Si 0.90 22.30 29.54 -169.99 -5.02 17.28 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 C -0.01 -0.16 7.55 -7.54 -0.06 -0.21 16 24 C -0.07 -0.67 9.69 -39.61 -0.38 -1.06 16 25 C -0.21 -1.83 9.04 -39.43 -0.36 -2.18 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 28 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 30 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 31 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 34 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.94 7.88 -51.93 -0.41 0.54 16 38 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 39 H 0.07 1.22 7.91 -51.93 -0.41 0.81 16 40 H 0.03 0.81 8.08 -51.92 -0.42 0.39 16 41 H 0.00 0.06 7.30 -51.93 -0.38 -0.32 16 42 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 43 H 0.07 1.32 7.42 -51.93 -0.39 0.94 16 44 H 0.08 1.55 8.14 -51.93 -0.42 1.12 16 45 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 46 H 0.13 0.84 6.30 -52.49 -0.33 0.51 16 LS Contribution 381.26 15.07 5.75 5.75 Total: -1.00 -33.17 381.26 -10.75 -43.92 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.74 Total: -3.30 kcal Atomic # 6 Polarization: -13.35 SS G_CDS: -2.36 Total: -15.71 kcal Atomic # 7 Polarization: -37.90 SS G_CDS: -0.82 Total: -38.72 kcal Atomic # 8 Polarization: -8.66 SS G_CDS: -0.56 Total: -9.23 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.17 -10.75 -43.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225068208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.085 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds