Wall clock time and date at job start Tue Mar 31 2020 09:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42904 * 109.47651 * 2 1 4 4 C 1.35892 * 117.00326 * 179.97438 * 3 2 1 5 5 C 1.38734 * 120.05681 * 179.97438 * 4 3 2 6 6 C 1.38148 * 119.94638 * 180.02562 * 5 4 3 7 7 C 1.38268 * 120.05182 * 0.02665 * 6 5 4 8 8 C 1.50705 * 119.93964 * 179.97438 * 7 6 5 9 9 C 1.53004 * 109.46748 * 90.00305 * 8 7 6 10 10 O 1.42906 * 109.46646 * 180.02562 * 9 8 7 11 11 C 1.42903 * 113.99676 * 180.02562 * 10 9 8 12 12 C 1.53514 * 114.17081 * 149.99722 * 11 10 9 13 13 N 1.47483 * 87.92777 * 87.61994 * 12 11 10 14 14 C 1.46903 * 110.99717 * 138.70421 * 13 12 11 15 15 C 1.50694 * 109.47066 * 169.99804 * 14 13 12 16 16 H 1.08000 * 120.00563 * 359.97438 * 15 14 13 17 17 C 1.37885 * 119.99902 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99913 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99766 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46985 * 179.97438 * 19 17 15 21 21 H 1.48494 * 109.47276 * 299.99832 * 19 17 15 22 22 H 1.48498 * 109.47150 * 60.00043 * 19 17 15 23 23 C 1.47480 * 87.83900 * 27.00973 * 13 12 11 24 24 C 1.38259 * 120.11469 * 0.25354 * 7 6 5 25 25 C 1.38152 * 120.05677 * 359.44545 * 24 7 6 26 26 H 1.09003 * 109.46739 * 299.99816 * 1 2 3 27 27 H 1.09001 * 109.47327 * 59.99651 * 1 2 3 28 28 H 1.08998 * 109.47293 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47240 * 240.00258 * 2 1 3 30 30 H 1.09001 * 109.47327 * 120.00349 * 2 1 3 31 31 H 1.07995 * 120.02511 * 0.02562 * 5 4 3 32 32 H 1.07998 * 119.96945 * 180.02562 * 6 5 4 33 33 H 1.09000 * 109.47253 * 330.00089 * 8 7 6 34 34 H 1.08994 * 109.46969 * 210.00099 * 8 7 6 35 35 H 1.09000 * 109.47420 * 59.99886 * 9 8 7 36 36 H 1.08994 * 109.47218 * 299.99642 * 9 8 7 37 37 H 1.08997 * 113.25538 * 17.04389 * 11 10 9 38 38 H 1.09000 * 113.47331 * 332.85672 * 12 11 10 39 39 H 1.08997 * 113.47627 * 202.38796 * 12 11 10 40 40 H 1.09007 * 109.47052 * 49.99488 * 14 13 12 41 41 H 1.09003 * 109.46808 * 290.00181 * 14 13 12 42 42 H 0.97001 * 119.99646 * 179.97438 * 18 17 15 43 43 H 1.09004 * 113.47132 * 87.75237 * 23 13 12 44 44 H 1.09000 * 113.47538 * 218.21976 * 23 13 12 45 45 H 1.08002 * 119.97451 * 179.70744 * 24 7 6 46 46 H 1.07994 * 120.03065 * 180.25524 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8852 2.8067 0.0000 6 6 5.2551 2.9850 0.0001 7 6 6.0962 1.8876 0.0000 8 6 7.5903 2.0851 -0.0005 9 6 8.0963 2.1521 1.4418 10 8 9.5130 2.3400 1.4413 11 6 10.0897 2.4158 2.7466 12 6 11.5336 1.9008 2.8267 13 7 11.9814 3.2586 2.4649 14 6 13.1533 3.6550 3.2570 15 6 13.7293 4.9304 2.6982 16 1 13.2710 5.3996 1.8402 17 6 14.8422 5.4981 3.2818 18 7 15.4007 4.9266 4.3263 19 14 15.5566 7.0787 2.5886 20 1 16.7413 7.4795 3.3894 21 1 15.9633 6.8609 1.1771 22 1 14.5328 8.1527 2.6486 23 6 10.7372 3.7696 3.0698 24 6 5.5690 0.6095 -0.0053 25 6 4.1998 0.4258 0.0009 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2286 3.6641 -0.0004 32 1 5.6693 3.9824 0.0001 33 1 7.8337 3.0149 -0.5147 34 1 8.0669 1.2503 -0.5143 35 1 7.8529 1.2223 1.9559 36 1 7.6198 2.9869 1.9556 37 1 9.4350 2.0326 3.5292 38 1 11.7694 1.1504 2.0721 39 1 11.8317 1.5983 3.8305 40 1 13.9051 2.8668 3.2130 41 1 12.8545 3.8145 4.2931 42 1 16.1838 5.3257 4.7366 43 1 10.8228 3.9658 4.1386 44 1 10.2981 4.6030 2.5214 45 1 6.2281 -0.2461 -0.0101 46 1 3.7884 -0.5727 0.0009 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225068208.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:42 Heat of formation + Delta-G solvation = -48.296686 kcal Electronic energy + Delta-G solvation = -23474.235916 eV Core-core repulsion = 19943.448035 eV Total energy + Delta-G solvation = -3530.787881 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.17833 -40.99419 -38.97767 -37.72744 -35.02879 -33.90150 -32.41620 -31.81455 -31.00768 -28.71086 -27.10899 -26.71043 -25.02884 -24.22975 -23.60012 -22.88259 -21.71530 -20.81577 -19.22614 -18.57418 -17.76614 -17.16490 -17.03546 -17.02305 -16.40778 -16.23754 -16.19736 -15.55169 -15.16626 -15.08803 -14.87075 -14.45575 -14.38138 -14.24179 -13.91011 -13.66998 -13.39318 -13.27407 -13.17190 -12.83676 -12.73198 -12.58369 -12.43959 -12.32229 -12.27148 -12.08457 -11.83747 -11.60611 -11.54004 -11.45019 -11.23988 -10.62190 -10.37425 -9.95456 -9.54230 -9.05745 -8.23349 -6.33696 0.38392 0.41228 1.38810 1.42603 1.50892 2.27028 2.39099 2.49099 2.83691 3.08275 3.46281 3.49817 3.82026 3.93602 3.99059 4.05659 4.05861 4.09101 4.23299 4.30617 4.36327 4.42105 4.48095 4.48430 4.52319 4.56883 4.63526 4.68483 4.73395 4.86703 4.92140 4.93968 4.94963 5.00191 5.04611 5.12159 5.16218 5.21124 5.34115 5.40282 5.58526 5.70901 5.80650 5.83661 6.09542 6.36079 6.46992 6.50912 6.80313 7.35767 8.87423 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.037265 B = 0.001854 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.185678 B =15101.143485 C =15485.226870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.113 3.887 5 C -0.164 4.164 6 C -0.079 4.079 7 C -0.124 4.124 8 C -0.068 4.068 9 C 0.063 3.937 10 O -0.373 6.373 11 C 0.084 3.916 12 C -0.010 4.010 13 N -0.486 5.486 14 C 0.172 3.828 15 C -0.530 4.530 16 H 0.054 0.946 17 C 0.003 3.997 18 N -0.932 5.932 19 Si 0.971 3.029 20 H -0.278 1.278 21 H -0.270 1.270 22 H -0.268 1.268 23 C -0.014 4.014 24 C -0.077 4.077 25 C -0.210 4.210 26 H 0.061 0.939 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.053 0.947 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.000 1.000 41 H -0.016 1.016 42 H 0.266 0.734 43 H 0.070 0.930 44 H 0.072 0.928 45 H 0.142 0.858 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.112 -12.063 -7.440 33.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 O -0.250 6.250 4 C 0.068 3.932 5 C -0.182 4.182 6 C -0.097 4.097 7 C -0.124 4.124 8 C -0.105 4.105 9 C -0.013 4.013 10 O -0.292 6.292 11 C 0.025 3.975 12 C -0.139 4.139 13 N -0.209 5.209 14 C 0.045 3.955 15 C -0.568 4.568 16 H 0.072 0.928 17 C -0.195 4.195 18 N -0.573 5.573 19 Si 0.795 3.205 20 H -0.203 1.203 21 H -0.195 1.195 22 H -0.193 1.193 23 C -0.143 4.143 24 C -0.095 4.095 25 C -0.228 4.228 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.118 0.882 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.154 0.846 32 H 0.157 0.843 33 H 0.093 0.907 34 H 0.100 0.900 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.018 0.982 41 H 0.002 0.998 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.160 0.840 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -29.814 -11.723 -8.177 33.063 hybrid contribution 0.695 0.504 1.009 1.325 sum -29.118 -11.219 -7.168 32.017 Atomic orbital electron populations 1.21809 0.91643 1.04142 1.03129 1.23048 0.96807 0.80820 1.02260 1.86052 1.18960 1.31280 1.88662 1.19213 0.82664 0.94610 0.96719 1.20612 0.95466 0.95341 1.06830 1.21095 0.92078 0.99504 0.97052 1.19670 0.94729 0.93630 1.04380 1.20320 0.90702 1.03938 0.95588 1.22703 0.80160 1.00683 0.97771 1.87941 1.21806 1.93064 1.26347 1.23045 0.93628 0.94887 0.85901 1.24119 0.94430 0.94472 1.00915 1.68948 1.02074 1.04460 1.45381 1.19965 0.89442 0.95410 0.90727 1.21404 1.12419 1.08736 1.14272 0.92767 1.25926 0.96953 1.01440 0.95224 1.70063 1.22564 1.41641 1.23005 0.85417 0.77808 0.78825 0.78449 1.20284 1.19518 1.19287 1.24284 0.92400 0.99124 0.98526 1.21113 0.94658 0.97103 0.96631 1.21446 0.94145 0.98707 1.08513 0.91953 0.91900 0.88239 0.91120 0.91165 0.84634 0.84274 0.90665 0.89966 0.91892 0.92886 0.87209 0.89779 0.90368 0.98153 0.99799 0.92538 0.91200 0.90928 0.84037 0.83610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 71.98 0.74 -0.36 16 2 C 0.05 0.47 5.46 71.98 0.39 0.87 16 3 O -0.33 -5.90 10.14 -92.33 -0.94 -6.83 16 4 C 0.11 2.08 6.69 22.51 0.15 2.23 16 5 C -0.16 -3.03 9.99 22.37 0.22 -2.81 16 6 C -0.08 -1.44 9.69 22.26 0.22 -1.22 16 7 C -0.12 -2.26 5.13 -19.85 -0.10 -2.36 16 8 C -0.07 -1.35 5.71 29.85 0.17 -1.18 16 9 C 0.06 1.39 5.76 71.98 0.41 1.81 16 10 O -0.37 -11.49 10.39 -148.98 -1.55 -13.03 16 11 C 0.08 2.59 4.66 30.94 0.14 2.74 16 12 C -0.01 -0.37 7.52 83.58 0.63 0.26 16 13 N -0.49 -22.77 6.32 -932.85 -5.89 -28.67 16 14 C 0.17 9.58 4.57 85.55 0.39 9.97 16 15 C -0.53 -31.97 9.39 25.60 0.24 -31.72 16 16 H 0.05 3.28 7.81 -2.91 -0.02 3.26 16 17 C 0.00 0.16 5.46 84.66 0.46 0.62 16 18 N -0.93 -57.23 13.29 21.45 0.28 -56.95 16 19 Si 0.97 45.81 29.54 68.60 2.03 47.83 16 20 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 21 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 23 C -0.01 -0.53 7.55 83.58 0.63 0.10 16 24 C -0.08 -1.25 9.69 22.25 0.22 -1.04 16 25 C -0.21 -3.29 9.04 22.37 0.20 -3.09 16 26 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 28 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.07 0.60 7.66 -2.39 -0.02 0.58 16 30 H 0.07 0.60 7.66 -2.39 -0.02 0.59 16 31 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 32 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 33 H 0.07 1.59 8.08 -2.39 -0.02 1.57 16 34 H 0.08 1.58 8.08 -2.39 -0.02 1.56 16 35 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 36 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 2.57 7.88 -2.39 -0.02 2.55 16 38 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.08 2.72 7.91 -2.39 -0.02 2.70 16 40 H 0.00 0.02 8.08 -2.38 -0.02 0.00 16 41 H -0.02 -0.91 7.30 -2.39 -0.02 -0.93 16 42 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 43 H 0.07 2.68 7.42 -2.39 -0.02 2.67 16 44 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 45 H 0.14 1.78 8.06 -2.91 -0.02 1.76 16 46 H 0.15 1.60 6.30 -2.91 -0.02 1.58 16 Total: -1.00 -71.79 381.26 -0.01 -71.80 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.94 Total: 11.05 kcal Atomic # 6 Polarization: -30.32 SS G_CDS: 5.12 Total: -25.20 kcal Atomic # 7 Polarization: -80.01 SS G_CDS: -5.61 Total: -85.62 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -2.48 Total: -19.87 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.83 kcal Total: -71.79 -0.01 -71.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225068208.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.504 kcal (2) G-P(sol) polarization free energy of solvation -71.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds