Wall clock time and date at job start Tue Mar 31 2020 09:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42910 * 109.46934 * 2 1 4 4 C 1.35900 * 116.99736 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05191 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94066 * 179.74366 * 5 4 3 7 7 C 1.38265 * 120.05858 * 0.25737 * 6 5 4 8 8 C 1.50698 * 119.94632 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46996 * 89.99880 * 8 7 6 10 10 O 1.42904 * 109.47280 * 180.02562 * 9 8 7 11 11 C 1.42898 * 113.99922 * 180.02562 * 10 9 8 12 12 H 1.09001 * 110.88454 * 26.12547 * 11 10 9 13 13 C 1.55159 * 111.00157 * 149.99878 * 11 10 9 14 14 C 1.54327 * 102.94282 * 153.57788 * 13 11 10 15 15 N 1.47028 * 107.26705 * 337.80945 * 14 13 11 16 16 C 1.36940 * 125.64543 * 178.90048 * 15 14 13 17 17 H 1.07999 * 119.99851 * 174.88131 * 16 15 14 18 18 C 1.38813 * 119.99791 * 354.87778 * 16 15 14 19 19 N 1.31619 * 120.00168 * 7.06483 * 18 16 15 20 20 Si 1.86804 * 119.99537 * 187.07187 * 18 16 15 21 21 H 1.48498 * 109.47364 * 94.98714 * 20 18 16 22 22 H 1.48500 * 109.46707 * 214.98602 * 20 18 16 23 23 H 1.48497 * 109.47217 * 334.98329 * 20 18 16 24 24 C 1.47421 * 108.70572 * 358.93694 * 15 14 13 25 25 C 1.38263 * 120.11011 * 359.97438 * 7 6 5 26 26 C 1.38148 * 120.05719 * 359.97438 * 25 7 6 27 27 H 1.08999 * 109.47236 * 300.00588 * 1 2 3 28 28 H 1.09000 * 109.46615 * 60.00211 * 1 2 3 29 29 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47431 * 240.00084 * 2 1 3 31 31 H 1.08999 * 109.47051 * 119.99477 * 2 1 3 32 32 H 1.07995 * 120.02789 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.97107 * 180.27395 * 6 5 4 34 34 H 1.08998 * 109.47178 * 209.99945 * 8 7 6 35 35 H 1.09005 * 109.47107 * 330.00216 * 8 7 6 36 36 H 1.08998 * 109.47210 * 300.00046 * 9 8 7 37 37 H 1.09005 * 109.46918 * 60.00221 * 9 8 7 38 38 H 1.08993 * 110.72168 * 271.94287 * 13 11 10 39 39 H 1.09005 * 110.72121 * 35.21576 * 13 11 10 40 40 H 1.08994 * 109.88195 * 97.22237 * 14 13 11 41 41 H 1.09003 * 109.88200 * 218.39646 * 14 13 11 42 42 H 0.96998 * 119.99845 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.37113 * 265.29450 * 24 15 14 44 44 H 1.08997 * 110.36653 * 142.96641 * 24 15 14 45 45 H 1.07995 * 119.97349 * 179.97438 * 25 7 6 46 46 H 1.07993 * 120.03046 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0000 6 6 5.2549 2.9852 0.0059 7 6 6.0962 1.8880 0.0070 8 6 7.5901 2.0854 0.0128 9 6 8.0904 2.1496 1.4573 10 8 9.5070 2.3374 1.4630 11 6 10.0784 2.4106 2.7707 12 1 9.4633 1.8753 3.4940 13 6 11.5339 1.8730 2.7725 14 6 12.1773 2.6214 3.9589 15 7 11.3778 3.8322 4.1964 16 6 11.6053 4.7588 5.1787 17 1 11.0101 5.6590 5.2202 18 6 12.6009 4.5409 6.1212 19 7 13.4169 3.5163 5.9916 20 14 12.7824 5.7018 7.5734 21 1 12.0484 5.1520 8.7414 22 1 14.2203 5.8457 7.9153 23 1 12.2228 7.0306 7.2178 24 6 10.2902 3.8832 3.2025 25 6 5.5690 0.6098 0.0026 26 6 4.1998 0.4261 -0.0022 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2284 3.6643 -0.0004 33 1 5.6692 3.9827 0.0100 34 1 8.0689 1.2517 -0.5008 35 1 7.8356 3.0164 -0.4983 36 1 7.6117 2.9833 1.9709 37 1 7.8449 1.2186 1.9685 38 1 11.5472 0.7965 2.9427 39 1 12.0386 2.1232 1.8393 40 1 12.1651 1.9891 4.8466 41 1 13.2025 2.8968 3.7113 42 1 14.1124 3.3639 6.6504 43 1 10.5861 4.4904 2.3471 44 1 9.3815 4.2803 3.6546 45 1 6.2281 -0.2457 0.0030 46 1 3.7885 -0.5725 -0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225071325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:48 Heat of formation + Delta-G solvation = -42.781581 kcal Electronic energy + Delta-G solvation = -23886.503987 eV Core-core repulsion = 20355.955259 eV Total energy + Delta-G solvation = -3530.548728 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.43943 -38.54894 -37.92065 -35.95380 -33.26135 -32.19184 -31.63357 -31.12698 -29.20729 -28.00166 -26.81966 -24.50600 -24.27420 -23.27166 -22.22306 -20.99982 -20.22572 -20.00062 -18.56386 -16.96849 -16.55977 -16.45171 -16.34747 -15.45220 -15.12511 -14.68953 -14.65264 -14.29363 -13.94537 -13.79332 -13.65266 -13.63765 -13.14452 -12.93392 -12.52483 -12.39540 -12.14994 -12.06787 -11.82670 -11.66088 -11.59123 -11.24122 -11.02098 -10.94847 -10.87039 -10.79149 -10.61163 -10.17406 -10.06785 -9.75192 -9.69200 -9.23165 -9.00297 -8.55610 -8.30711 -6.81057 -5.70554 -3.03153 1.11653 1.17482 2.86475 3.41659 3.46295 3.47667 3.49099 3.97651 4.45339 4.48596 4.53051 4.61134 4.66832 4.80213 4.88806 4.99052 5.07328 5.16111 5.27919 5.31845 5.34128 5.43540 5.46342 5.53888 5.56572 5.57910 5.61088 5.74683 5.80905 5.85922 5.95951 5.97496 6.08551 6.12792 6.31798 6.47949 6.52418 6.54927 6.57708 6.72660 6.76495 7.13709 7.57571 7.64714 7.67534 7.84965 8.27554 9.23294 9.83727 10.50187 11.41593 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.002123 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.846370 B =13188.165206 C =13722.716967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.318 6.318 4 C 0.123 3.877 5 C -0.150 4.150 6 C -0.073 4.073 7 C -0.115 4.115 8 C -0.075 4.075 9 C 0.068 3.932 10 O -0.381 6.381 11 C 0.073 3.927 12 H 0.066 0.934 13 C -0.139 4.139 14 C 0.177 3.823 15 N -0.605 5.605 16 C -0.228 4.228 17 H 0.078 0.922 18 C -0.008 4.008 19 N -0.921 5.921 20 Si 0.911 3.089 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C 0.120 3.880 25 C -0.074 4.074 26 C -0.208 4.208 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.130 0.870 33 H 0.132 0.868 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.048 0.952 37 H 0.045 0.955 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.044 0.956 42 H 0.252 0.748 43 H 0.027 0.973 44 H 0.037 0.963 45 H 0.126 0.874 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.152 -8.852 -14.511 27.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.232 6.232 4 C 0.078 3.922 5 C -0.169 4.169 6 C -0.091 4.091 7 C -0.115 4.115 8 C -0.112 4.112 9 C -0.009 4.009 10 O -0.300 6.300 11 C 0.015 3.985 12 H 0.084 0.916 13 C -0.178 4.178 14 C 0.053 3.947 15 N -0.332 5.332 16 C -0.356 4.356 17 H 0.096 0.904 18 C -0.205 4.205 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.206 1.206 24 C -0.007 4.007 25 C -0.092 4.092 26 C -0.226 4.226 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.097 0.903 35 H 0.099 0.901 36 H 0.066 0.934 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.085 0.915 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.045 0.955 44 H 0.055 0.945 45 H 0.144 0.856 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -22.053 -8.670 -14.506 27.783 hybrid contribution 0.038 0.261 1.075 1.107 sum -22.015 -8.409 -13.431 27.125 Atomic orbital electron populations 1.21778 0.92732 1.02874 1.03558 1.22777 0.95877 0.82037 1.01418 1.86065 1.19183 1.29255 1.88744 1.19003 0.82153 0.94236 0.96767 1.20432 0.95220 0.94802 1.06444 1.20949 0.92007 0.99021 0.97142 1.19700 0.95382 0.93091 1.03333 1.20418 0.90195 1.03881 0.96691 1.22421 0.82522 0.99807 0.96122 1.87844 1.19686 1.93768 1.28657 1.23406 0.94630 0.97654 0.82817 0.91615 1.23005 0.94118 0.99560 1.01104 1.21177 0.93932 0.86989 0.92628 1.44370 1.29714 1.25063 1.34096 1.19074 1.15173 0.98683 1.02701 0.90377 1.24838 0.98119 0.98401 0.99113 1.69976 1.20203 1.30491 1.36132 0.86100 0.76967 0.79894 0.82847 1.21628 1.21745 1.20609 1.21892 0.92115 0.93871 0.92774 1.20886 0.94217 0.96902 0.97213 1.21210 0.94313 0.97954 1.09164 0.91463 0.91532 0.90359 0.92071 0.91999 0.85206 0.85030 0.90324 0.90108 0.93357 0.93687 0.91959 0.91491 0.93267 0.93764 0.93732 0.95498 0.94480 0.85619 0.85608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.05 0.36 5.46 37.16 0.20 0.56 16 3 O -0.32 -3.15 10.14 -19.43 -0.20 -3.35 16 4 C 0.12 1.29 6.69 -39.22 -0.26 1.03 16 5 C -0.15 -1.54 9.99 -39.43 -0.39 -1.94 16 6 C -0.07 -0.75 9.69 -39.61 -0.38 -1.13 16 7 C -0.11 -1.21 5.13 -104.60 -0.54 -1.75 16 8 C -0.07 -0.83 5.71 -27.88 -0.16 -0.99 16 9 C 0.07 0.93 5.76 37.16 0.21 1.14 16 10 O -0.38 -6.49 10.15 -35.23 -0.36 -6.85 16 11 C 0.07 1.40 3.54 -24.58 -0.09 1.31 16 12 H 0.07 1.22 7.83 -51.93 -0.41 0.82 16 13 C -0.14 -2.79 6.69 -24.89 -0.17 -2.96 16 14 C 0.18 4.45 5.38 -3.06 -0.02 4.44 16 15 N -0.60 -16.08 3.39 -170.07 -0.58 -16.66 16 16 C -0.23 -6.53 10.27 -15.06 -0.15 -6.69 16 17 H 0.08 2.16 7.84 -52.49 -0.41 1.75 16 18 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 19 N -0.92 -27.45 10.36 55.49 0.57 -26.88 16 20 Si 0.91 22.38 29.56 -169.99 -5.02 17.36 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C 0.12 2.66 6.97 -2.53 -0.02 2.64 16 25 C -0.07 -0.73 9.69 -39.61 -0.38 -1.11 16 26 C -0.21 -1.97 9.04 -39.43 -0.36 -2.33 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.05 16 31 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 33 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 34 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 35 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.05 1.34 7.30 -51.93 -0.38 0.96 16 41 H 0.04 1.21 7.61 -51.93 -0.40 0.82 16 42 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 46 H 0.13 0.93 6.30 -52.49 -0.33 0.60 16 LS Contribution 374.80 15.07 5.65 5.65 Total: -1.00 -32.10 374.80 -9.91 -42.02 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -7.77 Total: -2.82 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: -2.22 Total: -8.47 kcal Atomic # 7 Polarization: -43.53 SS G_CDS: 0.00 Total: -43.54 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: -0.55 Total: -10.20 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.10 -9.91 -42.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225071325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.766 kcal (2) G-P(sol) polarization free energy of solvation -32.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds