Wall clock time and date at job start Tue Mar 31 2020 09:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42910 * 109.46934 * 2 1 4 4 C 1.35900 * 116.99736 * 179.97438 * 3 2 1 5 5 C 1.38731 * 120.05191 * 179.97438 * 4 3 2 6 6 C 1.38145 * 119.94066 * 179.74366 * 5 4 3 7 7 C 1.38265 * 120.05858 * 0.25737 * 6 5 4 8 8 C 1.50698 * 119.94632 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.46996 * 89.99880 * 8 7 6 10 10 O 1.42904 * 109.47280 * 180.02562 * 9 8 7 11 11 C 1.42898 * 113.99922 * 180.02562 * 10 9 8 12 12 H 1.09001 * 110.88454 * 26.12547 * 11 10 9 13 13 C 1.55159 * 111.00157 * 149.99878 * 11 10 9 14 14 C 1.54327 * 102.94282 * 153.57788 * 13 11 10 15 15 N 1.47028 * 107.26705 * 337.80945 * 14 13 11 16 16 C 1.36940 * 125.64543 * 178.90048 * 15 14 13 17 17 H 1.07999 * 119.99851 * 174.88131 * 16 15 14 18 18 C 1.38813 * 119.99791 * 354.87778 * 16 15 14 19 19 N 1.31619 * 120.00168 * 7.06483 * 18 16 15 20 20 Si 1.86804 * 119.99537 * 187.07187 * 18 16 15 21 21 H 1.48498 * 109.47364 * 94.98714 * 20 18 16 22 22 H 1.48500 * 109.46707 * 214.98602 * 20 18 16 23 23 H 1.48497 * 109.47217 * 334.98329 * 20 18 16 24 24 C 1.47421 * 108.70572 * 358.93694 * 15 14 13 25 25 C 1.38263 * 120.11011 * 359.97438 * 7 6 5 26 26 C 1.38148 * 120.05719 * 359.97438 * 25 7 6 27 27 H 1.08999 * 109.47236 * 300.00588 * 1 2 3 28 28 H 1.09000 * 109.46615 * 60.00211 * 1 2 3 29 29 H 1.08996 * 109.46756 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47431 * 240.00084 * 2 1 3 31 31 H 1.08999 * 109.47051 * 119.99477 * 2 1 3 32 32 H 1.07995 * 120.02789 * 0.02562 * 5 4 3 33 33 H 1.08006 * 119.97107 * 180.27395 * 6 5 4 34 34 H 1.08998 * 109.47178 * 209.99945 * 8 7 6 35 35 H 1.09005 * 109.47107 * 330.00216 * 8 7 6 36 36 H 1.08998 * 109.47210 * 300.00046 * 9 8 7 37 37 H 1.09005 * 109.46918 * 60.00221 * 9 8 7 38 38 H 1.08993 * 110.72168 * 271.94287 * 13 11 10 39 39 H 1.09005 * 110.72121 * 35.21576 * 13 11 10 40 40 H 1.08994 * 109.88195 * 97.22237 * 14 13 11 41 41 H 1.09003 * 109.88200 * 218.39646 * 14 13 11 42 42 H 0.96998 * 119.99845 * 180.02562 * 19 18 16 43 43 H 1.08993 * 110.37113 * 265.29450 * 24 15 14 44 44 H 1.08997 * 110.36653 * 142.96641 * 24 15 14 45 45 H 1.07995 * 119.97349 * 179.97438 * 25 7 6 46 46 H 1.07993 * 120.03046 * 180.02562 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0000 6 6 5.2549 2.9852 0.0059 7 6 6.0962 1.8880 0.0070 8 6 7.5901 2.0854 0.0128 9 6 8.0904 2.1496 1.4573 10 8 9.5070 2.3374 1.4630 11 6 10.0784 2.4106 2.7707 12 1 9.4633 1.8753 3.4940 13 6 11.5339 1.8730 2.7725 14 6 12.1773 2.6214 3.9589 15 7 11.3778 3.8322 4.1964 16 6 11.6053 4.7588 5.1787 17 1 11.0101 5.6590 5.2202 18 6 12.6009 4.5409 6.1212 19 7 13.4169 3.5163 5.9916 20 14 12.7824 5.7018 7.5734 21 1 12.0484 5.1520 8.7414 22 1 14.2203 5.8457 7.9153 23 1 12.2228 7.0306 7.2178 24 6 10.2902 3.8832 3.2025 25 6 5.5690 0.6098 0.0026 26 6 4.1998 0.4261 -0.0022 27 1 -0.3634 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 3.2284 3.6643 -0.0004 33 1 5.6692 3.9827 0.0100 34 1 8.0689 1.2517 -0.5008 35 1 7.8356 3.0164 -0.4983 36 1 7.6117 2.9833 1.9709 37 1 7.8449 1.2186 1.9685 38 1 11.5472 0.7965 2.9427 39 1 12.0386 2.1232 1.8393 40 1 12.1651 1.9891 4.8466 41 1 13.2025 2.8968 3.7113 42 1 14.1124 3.3639 6.6504 43 1 10.5861 4.4904 2.3471 44 1 9.3815 4.2803 3.6546 45 1 6.2281 -0.2457 0.0030 46 1 3.7885 -0.5725 -0.0052 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225071325.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:47 Heat of formation + Delta-G solvation = -60.259901 kcal Electronic energy + Delta-G solvation = -23887.261904 eV Core-core repulsion = 20355.955259 eV Total energy + Delta-G solvation = -3531.306645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.14372 -39.91918 -38.85054 -37.53618 -34.48674 -33.70387 -32.40384 -31.81479 -31.07618 -29.22525 -28.33937 -26.32289 -25.02502 -24.22230 -22.89901 -22.06642 -21.98602 -21.53105 -19.23478 -18.96534 -17.96481 -17.12123 -17.03636 -16.72438 -16.44268 -16.15563 -15.91863 -15.49007 -15.32379 -14.79295 -14.50049 -14.41308 -14.32654 -14.07907 -13.94242 -13.61901 -13.37791 -13.15934 -12.94135 -12.89680 -12.68674 -12.57120 -12.47604 -12.28262 -12.01597 -12.00227 -11.97302 -11.78558 -11.61652 -11.52841 -11.42011 -10.70804 -10.42480 -9.95718 -9.06083 -8.93450 -7.87922 -5.23733 0.38214 0.40928 1.45895 1.48124 1.57243 2.26651 2.43816 2.58848 2.87358 3.31014 3.72531 3.80797 3.84557 3.93798 4.02148 4.05184 4.06532 4.10613 4.17121 4.23416 4.35701 4.38353 4.43736 4.47950 4.54386 4.61558 4.64615 4.76464 4.89174 4.93507 4.93533 4.96786 4.99797 5.05145 5.12750 5.17907 5.21069 5.33837 5.39899 5.43067 5.62059 5.70502 5.71690 5.83578 6.14864 6.35073 6.46490 7.07216 7.73269 8.38443 9.23049 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024303 B = 0.002123 C = 0.002040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.846370 B =13188.165206 C =13722.716967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.335 6.335 4 C 0.113 3.887 5 C -0.165 4.165 6 C -0.079 4.079 7 C -0.126 4.126 8 C -0.065 4.065 9 C 0.063 3.937 10 O -0.385 6.385 11 C 0.092 3.908 12 H 0.075 0.925 13 C -0.126 4.126 14 C 0.185 3.815 15 N -0.626 5.626 16 C -0.247 4.247 17 H 0.082 0.918 18 C -0.065 4.065 19 N -0.949 5.949 20 Si 0.982 3.018 21 H -0.285 1.285 22 H -0.293 1.293 23 H -0.268 1.268 24 C 0.116 3.884 25 C -0.078 4.078 26 C -0.210 4.210 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.141 0.859 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.046 0.954 37 H 0.055 0.945 38 H 0.088 0.912 39 H 0.073 0.927 40 H 0.021 0.979 41 H 0.009 0.991 42 H 0.249 0.751 43 H 0.023 0.977 44 H 0.043 0.957 45 H 0.142 0.858 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.713 -9.576 -15.045 29.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.068 3.932 5 C -0.183 4.183 6 C -0.097 4.097 7 C -0.126 4.126 8 C -0.102 4.102 9 C -0.013 4.013 10 O -0.303 6.303 11 C 0.033 3.967 12 H 0.093 0.907 13 C -0.165 4.165 14 C 0.060 3.940 15 N -0.354 5.354 16 C -0.376 4.376 17 H 0.100 0.900 18 C -0.258 4.258 19 N -0.598 5.598 20 Si 0.809 3.191 21 H -0.212 1.212 22 H -0.220 1.220 23 H -0.192 1.192 24 C -0.010 4.010 25 C -0.096 4.096 26 C -0.229 4.229 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.118 0.882 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.107 0.893 39 H 0.092 0.908 40 H 0.039 0.961 41 H 0.027 0.973 42 H 0.058 0.942 43 H 0.041 0.959 44 H 0.062 0.938 45 H 0.160 0.840 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -23.651 -9.394 -15.070 29.576 hybrid contribution 0.431 0.481 1.177 1.342 sum -23.221 -8.913 -13.893 28.489 Atomic orbital electron populations 1.21809 0.91602 1.04154 1.03136 1.23051 0.96842 0.80827 1.02239 1.86054 1.18949 1.31272 1.88672 1.19218 0.82673 0.94626 0.96732 1.20621 0.95515 0.95338 1.06851 1.21110 0.92081 0.99557 0.96989 1.19707 0.94947 0.93607 1.04341 1.20322 0.90580 1.04287 0.95002 1.22654 0.80466 1.00192 0.98019 1.87835 1.21815 1.93682 1.26993 1.23049 0.94402 0.95153 0.84082 0.90701 1.22840 0.94355 1.00383 0.98887 1.20941 0.92808 0.86736 0.93560 1.44679 1.31175 1.25042 1.34537 1.19464 1.15218 0.99440 1.03465 0.89997 1.25723 0.97964 1.00364 1.01786 1.70187 1.20621 1.32213 1.36766 0.85018 0.76565 0.78345 0.79145 1.21176 1.21973 1.19243 1.22035 0.91012 0.96274 0.91659 1.21125 0.94673 0.97165 0.96619 1.21446 0.94180 0.98709 1.08551 0.92022 0.91808 0.88217 0.91008 0.91322 0.84612 0.84162 0.89535 0.90088 0.93583 0.92697 0.89326 0.90848 0.96115 0.97267 0.94193 0.95878 0.93848 0.84023 0.83627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.04 0.52 5.46 71.98 0.39 0.91 16 3 O -0.33 -6.30 10.14 -92.43 -0.94 -7.24 16 4 C 0.11 2.22 6.69 22.51 0.15 2.37 16 5 C -0.16 -3.25 9.99 22.37 0.22 -3.03 16 6 C -0.08 -1.53 9.69 22.25 0.22 -1.31 16 7 C -0.13 -2.43 5.13 -19.85 -0.10 -2.53 16 8 C -0.06 -1.30 5.71 29.85 0.17 -1.13 16 9 C 0.06 1.57 5.76 71.98 0.41 1.98 16 10 O -0.38 -12.24 10.15 -148.98 -1.51 -13.76 16 11 C 0.09 3.36 3.54 31.99 0.11 3.48 16 12 H 0.08 2.62 7.83 -2.39 -0.02 2.61 16 13 C -0.13 -4.91 6.69 31.78 0.21 -4.70 16 14 C 0.18 9.44 5.38 86.73 0.47 9.91 16 15 N -0.63 -33.68 3.39 -691.99 -2.35 -36.03 16 16 C -0.25 -14.29 10.27 84.03 0.86 -13.42 16 17 H 0.08 4.53 7.84 -2.91 -0.02 4.51 16 18 C -0.07 -3.79 5.48 84.86 0.46 -3.32 16 19 N -0.95 -57.97 10.36 21.65 0.22 -57.75 16 20 Si 0.98 46.34 29.56 68.60 2.03 48.37 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 C 0.12 5.06 6.97 86.86 0.61 5.67 16 25 C -0.08 -1.36 9.69 22.25 0.22 -1.15 16 26 C -0.21 -3.59 9.04 22.37 0.20 -3.39 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.07 0.67 7.66 -2.39 -0.02 0.65 16 31 H 0.07 0.69 7.67 -2.39 -0.02 0.68 16 32 H 0.14 2.38 8.06 -2.91 -0.02 2.35 16 33 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 34 H 0.09 1.61 8.08 -2.39 -0.02 1.59 16 35 H 0.08 1.62 8.08 -2.38 -0.02 1.60 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.05 1.28 8.12 -2.38 -0.02 1.26 16 38 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 39 H 0.07 2.76 8.14 -2.38 -0.02 2.74 16 40 H 0.02 1.16 7.30 -2.39 -0.02 1.14 16 41 H 0.01 0.52 7.61 -2.39 -0.02 0.50 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 45 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 46 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 Total: -1.00 -69.25 374.80 3.74 -65.51 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: 0.93 Total: 11.06 kcal Atomic # 6 Polarization: -15.52 SS G_CDS: 5.35 Total: -10.17 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -2.12 Total: -93.78 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -2.45 Total: -21.00 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -69.25 3.74 -65.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225071325.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.255 kcal (2) G-P(sol) polarization free energy of solvation -69.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds