Wall clock time and date at job start Tue Mar 31 2020 09:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47145 * 2 1 4 4 C 1.35895 * 117.00002 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.05292 * 180.02562 * 4 3 2 6 6 C 1.38142 * 119.94098 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05670 * 359.97264 * 6 5 4 8 8 C 1.50706 * 119.94114 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47116 * 90.00278 * 8 7 6 10 10 O 1.42895 * 109.47391 * 179.97438 * 9 8 7 11 11 C 1.42894 * 114.00459 * 179.97438 * 10 9 8 12 12 H 1.09005 * 110.63976 * 330.70835 * 11 10 9 13 13 C 1.55158 * 110.72483 * 207.56379 * 11 10 9 14 14 C 1.54905 * 101.58008 * 206.13719 * 13 11 10 15 15 N 1.47418 * 104.83774 * 37.00710 * 14 13 11 16 16 C 1.36934 * 125.65077 * 155.90273 * 15 14 13 17 17 H 1.08005 * 120.00429 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00120 * 359.97438 * 16 15 14 19 19 N 1.31623 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47095 * 119.99733 * 20 18 16 23 23 H 1.48494 * 109.46930 * 239.99858 * 20 18 16 24 24 C 1.47318 * 108.73532 * 335.71802 * 15 14 13 25 25 C 1.38263 * 120.11156 * 0.30274 * 7 6 5 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 7 6 27 27 H 1.08999 * 109.46752 * 299.99243 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99478 * 1 2 3 29 29 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46752 * 240.00757 * 2 1 3 31 31 H 1.08997 * 109.47282 * 120.00040 * 2 1 3 32 32 H 1.07993 * 120.02833 * 0.04692 * 5 4 3 33 33 H 1.07998 * 119.97194 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99692 * 8 7 6 35 35 H 1.09000 * 109.47248 * 330.00409 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 1.09001 * 111.00154 * 324.21051 * 13 11 10 39 39 H 1.09000 * 111.00419 * 88.02008 * 13 11 10 40 40 H 1.09004 * 110.36751 * 155.85227 * 14 13 11 41 41 H 1.09009 * 110.36718 * 278.05765 * 14 13 11 42 42 H 0.96994 * 119.99938 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.06312 * 241.87111 * 24 15 14 44 44 H 1.08994 * 109.85242 * 120.61046 * 24 15 14 45 45 H 1.08001 * 119.97259 * 179.69844 * 25 7 6 46 46 H 1.07993 * 120.02933 * 180.29794 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0011 6 6 5.2549 2.9852 0.0011 7 6 6.0962 1.8879 0.0011 8 6 7.5902 2.0854 0.0017 9 6 8.0953 2.1518 1.4444 10 8 9.5120 2.3385 1.4451 11 6 10.0877 2.4149 2.7507 12 1 9.3713 2.8241 3.4632 13 6 11.3865 3.2633 2.7293 14 6 12.1598 2.6786 3.9375 15 7 11.8612 1.2352 3.9141 16 6 12.6403 0.2501 4.4596 17 1 12.3325 -0.7828 4.3896 18 6 13.8258 0.5789 5.1026 19 7 14.2012 1.8376 5.1876 20 14 14.8883 -0.7650 5.8475 21 1 14.2486 -2.0855 5.6188 22 1 16.2289 -0.7467 5.2093 23 1 15.0315 -0.5309 7.3068 24 6 10.5835 1.0277 3.2107 25 6 5.5690 0.6097 -0.0052 26 6 4.1998 0.4260 0.0001 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2284 3.6643 0.0019 33 1 5.6692 3.9826 0.0020 34 1 8.0672 1.2508 -0.5121 35 1 7.8340 3.0155 -0.5117 36 1 7.6182 2.9863 1.9584 37 1 7.8514 1.2217 1.9580 38 1 11.9378 3.1104 1.8015 39 1 11.1655 4.3200 2.8804 40 1 13.2304 2.8465 3.8199 41 1 11.8063 3.1259 4.8666 42 1 15.0297 2.0673 5.6365 43 1 9.8543 0.5781 3.8847 44 1 10.7379 0.3835 2.3452 45 1 6.2281 -0.2458 -0.0101 46 1 3.7885 -0.5725 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225071326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:54 Heat of formation + Delta-G solvation = -41.653188 kcal Electronic energy + Delta-G solvation = -23896.098513 eV Core-core repulsion = 20365.598716 eV Total energy + Delta-G solvation = -3530.499797 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.44063 -38.56210 -37.92478 -35.91921 -33.26273 -32.19190 -31.62651 -31.12921 -29.20578 -27.98264 -26.82588 -24.50954 -24.29162 -23.27165 -22.22706 -20.99743 -20.11726 -20.07473 -18.56297 -16.96047 -16.60655 -16.45632 -16.29426 -15.54797 -15.10010 -14.73865 -14.52195 -14.33303 -14.09840 -13.77207 -13.68675 -13.56330 -13.16664 -12.99051 -12.41431 -12.36591 -12.20804 -11.98103 -11.79499 -11.60211 -11.52598 -11.21017 -11.05130 -10.96589 -10.90267 -10.77265 -10.68741 -10.23847 -10.06775 -9.74582 -9.51108 -9.23633 -9.04044 -8.63912 -8.30742 -6.81646 -5.63490 -3.05188 1.11316 1.17466 2.86346 3.41240 3.46086 3.47501 3.49302 3.99451 4.45833 4.49058 4.51554 4.61298 4.67336 4.80702 4.89313 4.99247 5.07509 5.16097 5.28144 5.30510 5.34331 5.43259 5.47337 5.51903 5.53937 5.56955 5.60329 5.74901 5.79675 5.88756 5.92422 6.00174 6.08507 6.13295 6.38591 6.48111 6.54246 6.57181 6.62887 6.69810 6.76536 7.13468 7.51870 7.64612 7.69389 7.87654 8.37622 9.23714 9.84228 10.49111 11.40695 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.002115 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.323015 B =13235.381221 C =13963.730755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.319 6.319 4 C 0.123 3.877 5 C -0.151 4.151 6 C -0.074 4.074 7 C -0.114 4.114 8 C -0.075 4.075 9 C 0.067 3.933 10 O -0.379 6.379 11 C 0.077 3.923 12 H 0.062 0.938 13 C -0.138 4.138 14 C 0.152 3.848 15 N -0.603 5.603 16 C -0.220 4.220 17 H 0.078 0.922 18 C -0.014 4.014 19 N -0.923 5.923 20 Si 0.916 3.084 21 H -0.280 1.280 22 H -0.290 1.290 23 H -0.291 1.291 24 C 0.117 3.883 25 C -0.073 4.073 26 C -0.207 4.207 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.045 0.955 37 H 0.047 0.953 38 H 0.070 0.930 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.013 0.987 42 H 0.252 0.748 43 H 0.020 0.980 44 H 0.034 0.966 45 H 0.127 0.873 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.540 0.251 -12.195 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.233 6.233 4 C 0.078 3.922 5 C -0.170 4.170 6 C -0.092 4.092 7 C -0.115 4.115 8 C -0.112 4.112 9 C -0.010 4.010 10 O -0.298 6.298 11 C 0.019 3.981 12 H 0.080 0.920 13 C -0.177 4.177 14 C 0.027 3.973 15 N -0.330 5.330 16 C -0.348 4.348 17 H 0.096 0.904 18 C -0.209 4.209 19 N -0.572 5.572 20 Si 0.746 3.254 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.218 1.218 24 C -0.009 4.009 25 C -0.091 4.091 26 C -0.226 4.226 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.147 0.853 33 H 0.149 0.851 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.089 0.911 39 H 0.080 0.920 40 H 0.128 0.872 41 H 0.031 0.969 42 H 0.062 0.938 43 H 0.038 0.962 44 H 0.052 0.948 45 H 0.145 0.855 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -24.408 0.363 -12.250 27.312 hybrid contribution 0.326 -1.014 0.744 1.299 sum -24.082 -0.652 -11.506 26.698 Atomic orbital electron populations 1.21778 0.92730 1.02892 1.03524 1.22782 0.95869 0.82014 1.01470 1.86057 1.19177 1.29289 1.88749 1.19002 0.82157 0.94232 0.96783 1.20414 0.95187 0.94771 1.06603 1.20920 0.92007 0.98911 0.97411 1.19706 0.95377 0.93098 1.03302 1.20420 0.90182 1.03896 0.96710 1.22417 0.82489 0.99876 0.96174 1.87894 1.19576 1.93691 1.28651 1.23230 0.94896 0.96945 0.83033 0.92044 1.23149 0.95000 0.97565 1.01947 1.21954 1.01616 0.82524 0.91169 1.44473 1.19869 1.03293 1.65346 1.19144 1.00126 0.87613 1.27936 0.90417 1.24805 0.98290 0.96595 1.01178 1.69792 1.24039 1.14992 1.48390 0.85974 0.80281 0.80562 0.78549 1.20538 1.21705 1.21777 1.21754 0.89219 0.94675 0.95289 1.20919 0.94250 0.96991 0.96950 1.21224 0.94315 0.97995 1.09025 0.91485 0.91541 0.90343 0.92042 0.91968 0.85258 0.85145 0.90176 0.90221 0.93643 0.93481 0.91139 0.92040 0.87171 0.96898 0.93756 0.96249 0.94826 0.85502 0.85564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.05 0.36 5.46 37.16 0.20 0.56 16 3 O -0.32 -3.14 10.14 -19.41 -0.20 -3.34 16 4 C 0.12 1.28 6.69 -39.21 -0.26 1.02 16 5 C -0.15 -1.52 9.99 -39.43 -0.39 -1.91 16 6 C -0.07 -0.74 9.69 -39.61 -0.38 -1.12 16 7 C -0.11 -1.22 5.14 -104.60 -0.54 -1.75 16 8 C -0.07 -0.85 5.71 -27.88 -0.16 -1.01 16 9 C 0.07 0.92 5.77 37.16 0.21 1.14 16 10 O -0.38 -6.60 10.07 -35.23 -0.35 -6.95 16 11 C 0.08 1.47 3.41 -24.89 -0.08 1.39 16 12 H 0.06 1.10 7.85 -51.93 -0.41 0.69 16 13 C -0.14 -2.80 6.81 -24.58 -0.17 -2.97 16 14 C 0.15 3.82 5.89 -2.53 -0.01 3.81 16 15 N -0.60 -16.14 3.40 -169.83 -0.58 -16.71 16 16 C -0.22 -6.31 10.28 -15.06 -0.15 -6.47 16 17 H 0.08 2.16 7.83 -52.48 -0.41 1.75 16 18 C -0.01 -0.39 5.49 -17.43 -0.10 -0.48 16 19 N -0.92 -27.32 10.09 55.49 0.56 -26.76 16 20 Si 0.92 22.40 29.55 -169.99 -5.02 17.37 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 24 C 0.12 2.62 7.04 -2.90 -0.02 2.60 16 25 C -0.07 -0.74 9.69 -39.61 -0.38 -1.13 16 26 C -0.21 -2.01 9.04 -39.43 -0.36 -2.37 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.36 7.66 -51.93 -0.40 -0.04 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 33 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 34 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 36 H 0.05 0.58 8.11 -51.93 -0.42 0.16 16 37 H 0.05 0.65 8.14 -51.92 -0.42 0.23 16 38 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.11 3.07 5.87 -51.93 -0.30 2.77 16 41 H 0.01 0.34 8.14 -51.92 -0.42 -0.08 16 42 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 43 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 45 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 46 H 0.13 0.97 6.30 -52.49 -0.33 0.64 16 LS Contribution 374.08 15.07 5.64 5.64 Total: -1.00 -31.99 374.08 -9.89 -41.88 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.71 Total: -2.05 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.22 Total: -9.07 kcal Atomic # 7 Polarization: -43.46 SS G_CDS: -0.02 Total: -43.48 kcal Atomic # 8 Polarization: -9.74 SS G_CDS: -0.55 Total: -10.29 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.99 -9.89 -41.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225071326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.222 kcal (2) G-P(sol) polarization free energy of solvation -31.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds