Wall clock time and date at job start Tue Mar 31 2020 09:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 O 1.42905 * 109.47145 * 2 1 4 4 C 1.35895 * 117.00002 * 179.97438 * 3 2 1 5 5 C 1.38737 * 120.05292 * 180.02562 * 4 3 2 6 6 C 1.38142 * 119.94098 * 180.02562 * 5 4 3 7 7 C 1.38269 * 120.05670 * 359.97264 * 6 5 4 8 8 C 1.50706 * 119.94114 * 180.02562 * 7 6 5 9 9 C 1.53000 * 109.47116 * 90.00278 * 8 7 6 10 10 O 1.42895 * 109.47391 * 179.97438 * 9 8 7 11 11 C 1.42894 * 114.00459 * 179.97438 * 10 9 8 12 12 H 1.09005 * 110.63976 * 330.70835 * 11 10 9 13 13 C 1.55158 * 110.72483 * 207.56379 * 11 10 9 14 14 C 1.54905 * 101.58008 * 206.13719 * 13 11 10 15 15 N 1.47418 * 104.83774 * 37.00710 * 14 13 11 16 16 C 1.36934 * 125.65077 * 155.90273 * 15 14 13 17 17 H 1.08005 * 120.00429 * 179.97438 * 16 15 14 18 18 C 1.38815 * 120.00120 * 359.97438 * 16 15 14 19 19 N 1.31623 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 120.00218 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46896 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47095 * 119.99733 * 20 18 16 23 23 H 1.48494 * 109.46930 * 239.99858 * 20 18 16 24 24 C 1.47318 * 108.73532 * 335.71802 * 15 14 13 25 25 C 1.38263 * 120.11156 * 0.30274 * 7 6 5 26 26 C 1.38143 * 120.05579 * 359.44512 * 25 7 6 27 27 H 1.08999 * 109.46752 * 299.99243 * 1 2 3 28 28 H 1.09002 * 109.47255 * 59.99478 * 1 2 3 29 29 H 1.09003 * 109.47072 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46752 * 240.00757 * 2 1 3 31 31 H 1.08997 * 109.47282 * 120.00040 * 2 1 3 32 32 H 1.07993 * 120.02833 * 0.04692 * 5 4 3 33 33 H 1.07998 * 119.97194 * 180.02562 * 6 5 4 34 34 H 1.09000 * 109.46646 * 209.99692 * 8 7 6 35 35 H 1.09000 * 109.47248 * 330.00409 * 8 7 6 36 36 H 1.09000 * 109.47214 * 300.00167 * 9 8 7 37 37 H 1.09008 * 109.47142 * 59.99333 * 9 8 7 38 38 H 1.09001 * 111.00154 * 324.21051 * 13 11 10 39 39 H 1.09000 * 111.00419 * 88.02008 * 13 11 10 40 40 H 1.09004 * 110.36751 * 155.85227 * 14 13 11 41 41 H 1.09009 * 110.36718 * 278.05765 * 14 13 11 42 42 H 0.96994 * 119.99938 * 180.02562 * 19 18 16 43 43 H 1.09004 * 110.06312 * 241.87111 * 24 15 14 44 44 H 1.08994 * 109.85242 * 120.61046 * 24 15 14 45 45 H 1.08001 * 119.97259 * 179.69844 * 25 7 6 46 46 H 1.07993 * 120.02933 * 180.29794 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3536 1.5254 0.0005 5 6 3.8851 2.8069 0.0011 6 6 5.2549 2.9852 0.0011 7 6 6.0962 1.8879 0.0011 8 6 7.5902 2.0854 0.0017 9 6 8.0953 2.1518 1.4444 10 8 9.5120 2.3385 1.4451 11 6 10.0877 2.4149 2.7507 12 1 9.3713 2.8241 3.4632 13 6 11.3865 3.2633 2.7293 14 6 12.1598 2.6786 3.9375 15 7 11.8612 1.2352 3.9141 16 6 12.6403 0.2501 4.4596 17 1 12.3325 -0.7828 4.3896 18 6 13.8258 0.5789 5.1026 19 7 14.2012 1.8376 5.1876 20 14 14.8883 -0.7650 5.8475 21 1 14.2486 -2.0855 5.6188 22 1 16.2289 -0.7467 5.2093 23 1 15.0315 -0.5309 7.3068 24 6 10.5835 1.0277 3.2107 25 6 5.5690 0.6097 -0.0052 26 6 4.1998 0.4260 0.0001 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 3.2284 3.6643 0.0019 33 1 5.6692 3.9826 0.0020 34 1 8.0672 1.2508 -0.5121 35 1 7.8340 3.0155 -0.5117 36 1 7.6182 2.9863 1.9584 37 1 7.8514 1.2217 1.9580 38 1 11.9378 3.1104 1.8015 39 1 11.1655 4.3200 2.8804 40 1 13.2304 2.8465 3.8199 41 1 11.8063 3.1259 4.8666 42 1 15.0297 2.0673 5.6365 43 1 9.8543 0.5781 3.8847 44 1 10.7379 0.3835 2.3452 45 1 6.2281 -0.2458 -0.0101 46 1 3.7885 -0.5725 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225071326.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:53 Heat of formation + Delta-G solvation = -58.938589 kcal Electronic energy + Delta-G solvation = -23896.848064 eV Core-core repulsion = 20365.598716 eV Total energy + Delta-G solvation = -3531.249349 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14982 -39.93547 -38.85018 -37.51502 -34.49042 -33.69789 -32.41040 -31.81906 -31.07205 -29.19622 -28.36160 -26.33148 -25.03277 -24.23989 -22.90529 -22.12189 -21.89225 -21.52854 -19.23905 -18.97731 -17.99252 -17.09473 -17.04382 -16.79090 -16.57624 -16.04172 -15.88336 -15.53709 -15.27567 -14.96424 -14.44678 -14.37506 -14.28184 -14.26868 -13.63533 -13.51760 -13.40069 -13.22685 -12.95626 -12.88730 -12.68023 -12.61574 -12.50100 -12.30010 -12.05164 -11.98591 -11.96605 -11.76401 -11.62792 -11.53603 -11.31477 -10.77714 -10.45890 -9.96250 -9.06636 -8.92578 -7.79341 -5.24716 0.37830 0.40182 1.46386 1.47883 1.58331 2.26048 2.45417 2.58732 2.87843 3.31177 3.69403 3.80137 3.85030 3.93010 4.01252 4.04353 4.06399 4.10330 4.17778 4.22439 4.35059 4.37757 4.43377 4.48020 4.52909 4.63144 4.64820 4.78039 4.88283 4.93001 4.93101 4.95865 5.00815 5.05175 5.11917 5.16655 5.20308 5.33300 5.39624 5.43783 5.59988 5.69961 5.76956 5.82783 6.26755 6.35736 6.45489 7.08313 7.74125 8.38116 9.22974 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.026105 B = 0.002115 C = 0.002005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.323015 B =13235.381221 C =13963.730755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.113 3.887 5 C -0.162 4.162 6 C -0.076 4.076 7 C -0.125 4.125 8 C -0.065 4.065 9 C 0.063 3.937 10 O -0.387 6.387 11 C 0.093 3.907 12 H 0.080 0.920 13 C -0.125 4.125 14 C 0.154 3.846 15 N -0.626 5.626 16 C -0.241 4.241 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.949 5.949 20 Si 0.984 3.016 21 H -0.267 1.267 22 H -0.289 1.289 23 H -0.290 1.290 24 C 0.113 3.887 25 C -0.082 4.082 26 C -0.211 4.211 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.098 0.902 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.140 0.860 33 H 0.147 0.853 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.045 0.955 38 H 0.064 0.936 39 H 0.092 0.908 40 H 0.078 0.922 41 H -0.004 1.004 42 H 0.249 0.751 43 H 0.025 0.975 44 H 0.027 0.973 45 H 0.135 0.865 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.970 -0.179 -12.746 28.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.030 4.030 3 O -0.248 6.248 4 C 0.068 3.932 5 C -0.181 4.181 6 C -0.094 4.094 7 C -0.126 4.126 8 C -0.103 4.103 9 C -0.014 4.014 10 O -0.306 6.306 11 C 0.035 3.965 12 H 0.098 0.902 13 C -0.163 4.163 14 C 0.029 3.971 15 N -0.353 5.353 16 C -0.370 4.370 17 H 0.097 0.903 18 C -0.261 4.261 19 N -0.598 5.598 20 Si 0.812 3.188 21 H -0.192 1.192 22 H -0.216 1.216 23 H -0.217 1.217 24 C -0.013 4.013 25 C -0.100 4.100 26 C -0.230 4.230 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.157 0.843 33 H 0.164 0.836 34 H 0.096 0.904 35 H 0.105 0.895 36 H 0.076 0.924 37 H 0.063 0.937 38 H 0.083 0.917 39 H 0.111 0.889 40 H 0.096 0.904 41 H 0.014 0.986 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.045 0.955 45 H 0.153 0.847 46 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -25.875 -0.074 -12.823 28.878 hybrid contribution 0.668 -0.910 0.881 1.432 sum -25.208 -0.984 -11.941 27.910 Atomic orbital electron populations 1.21806 0.91495 1.04139 1.03203 1.23044 0.96907 0.80876 1.02149 1.86048 1.18909 1.31165 1.88667 1.19227 0.82626 0.94656 0.96735 1.20643 0.95555 0.95225 1.06649 1.21117 0.91939 0.99522 0.96803 1.19699 0.94923 0.93585 1.04358 1.20324 0.90594 1.04225 0.95129 1.22651 0.80455 1.00279 0.97988 1.87878 1.21844 1.93602 1.27282 1.22945 0.94837 0.94401 0.84322 0.90161 1.22966 0.94893 0.99255 0.99221 1.21749 1.00444 0.82368 0.92556 1.44787 1.21341 1.03613 1.65577 1.19501 1.00872 0.88373 1.28283 0.90254 1.25691 0.99557 0.98931 1.01874 1.70035 1.24202 1.16727 1.48875 0.84923 0.78196 0.78359 0.77301 1.19184 1.21602 1.21694 1.21909 0.87762 0.96899 0.94683 1.21109 0.94707 0.97271 0.96886 1.21422 0.94134 0.98772 1.08661 0.91915 0.91732 0.88309 0.91157 0.91436 0.84255 0.83572 0.90403 0.89502 0.92364 0.93706 0.91699 0.88947 0.90383 0.98623 0.94138 0.95707 0.95527 0.84706 0.83908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.04 0.54 5.46 71.98 0.39 0.93 16 3 O -0.33 -6.23 10.14 -92.36 -0.94 -7.17 16 4 C 0.11 2.22 6.69 22.51 0.15 2.37 16 5 C -0.16 -3.04 9.99 22.37 0.22 -2.82 16 6 C -0.08 -1.37 9.69 22.25 0.22 -1.16 16 7 C -0.13 -2.46 5.14 -19.85 -0.10 -2.56 16 8 C -0.07 -1.36 5.71 29.85 0.17 -1.19 16 9 C 0.06 1.58 5.77 71.98 0.42 1.99 16 10 O -0.39 -12.68 10.07 -148.98 -1.50 -14.18 16 11 C 0.09 3.42 3.41 31.78 0.11 3.52 16 12 H 0.08 2.66 7.85 -2.38 -0.02 2.64 16 13 C -0.12 -4.93 6.81 31.99 0.22 -4.72 16 14 C 0.15 7.82 5.89 86.85 0.51 8.34 16 15 N -0.63 -33.85 3.40 -691.23 -2.35 -36.20 16 16 C -0.24 -14.01 10.28 84.03 0.86 -13.15 16 17 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 18 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 19 N -0.95 -57.30 10.09 21.65 0.22 -57.08 16 20 Si 0.98 46.33 29.55 68.60 2.03 48.36 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 23 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 24 C 0.11 5.01 7.04 86.67 0.61 5.62 16 25 C -0.08 -1.55 9.69 22.25 0.22 -1.34 16 26 C -0.21 -3.81 9.04 22.37 0.20 -3.61 16 27 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.07 0.71 7.66 -2.39 -0.02 0.69 16 31 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 32 H 0.14 2.22 8.06 -2.91 -0.02 2.19 16 33 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 34 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 35 H 0.09 1.67 8.08 -2.39 -0.02 1.65 16 36 H 0.06 1.34 8.11 -2.39 -0.02 1.32 16 37 H 0.04 1.15 8.14 -2.38 -0.02 1.13 16 38 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 39 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.08 4.49 5.87 -2.38 -0.01 4.47 16 41 H 0.00 -0.22 8.14 -2.38 -0.02 -0.24 16 42 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 43 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 44 H 0.03 1.21 8.06 -2.39 -0.02 1.19 16 45 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 46 H 0.14 1.96 6.30 -2.91 -0.02 1.94 16 Total: -1.00 -68.70 374.08 3.80 -64.91 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: 0.94 Total: 13.12 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.40 Total: -11.76 kcal Atomic # 7 Polarization: -91.15 SS G_CDS: -2.13 Total: -93.28 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -2.44 Total: -21.35 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -68.70 3.80 -64.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225071326.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.968 kcal (2) G-P(sol) polarization free energy of solvation -68.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds