Wall clock time and date at job start Tue Mar 31 2020 10:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36420 * 125.09926 * 2 1 4 4 C 1.34614 * 109.89694 * 179.48425 * 3 2 1 5 5 C 1.45917 * 107.04842 * 0.57772 * 4 3 2 6 6 N 1.33494 * 134.90441 * 179.31519 * 5 4 3 7 7 C 1.31478 * 120.38568 * 180.02562 * 6 5 4 8 8 N 1.32151 * 122.33892 * 0.02562 * 7 6 5 9 9 C 1.32760 * 121.39001 * 359.97438 * 8 7 6 10 10 O 1.35527 * 120.69195 * 179.97438 * 9 8 7 11 11 C 1.42905 * 116.99971 * 0.02562 * 10 9 8 12 12 H 1.09003 * 109.47034 * 29.99746 * 11 10 9 13 13 C 1.50699 * 109.46910 * 269.99413 * 11 10 9 14 14 H 1.08008 * 119.99567 * 122.50571 * 13 11 10 15 15 C 1.37870 * 120.00393 * 302.51136 * 13 11 10 16 16 N 1.31520 * 119.99941 * 5.23242 * 15 13 11 17 17 Si 1.86798 * 120.00375 * 185.23859 * 15 13 11 18 18 H 1.48505 * 109.47001 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47489 * 119.99490 * 17 15 13 20 20 H 1.48506 * 109.47082 * 239.99864 * 17 15 13 21 21 C 1.52998 * 109.47242 * 149.99616 * 11 10 9 22 22 N 1.46899 * 109.46978 * 293.27095 * 21 11 10 23 23 C 1.46904 * 109.47204 * 65.78707 * 22 21 11 24 24 C 1.46896 * 109.46969 * 185.78585 * 22 21 11 25 25 C 1.46903 * 109.47123 * 305.78452 * 22 21 11 26 26 C 1.37550 * 125.09574 * 179.97438 * 2 1 3 27 27 H 1.08997 * 109.46924 * 270.00653 * 1 2 3 28 28 H 1.08999 * 109.47076 * 30.00476 * 1 2 3 29 29 H 1.08997 * 109.47190 * 150.00019 * 1 2 3 30 30 H 1.08002 * 125.04317 * 359.95565 * 3 2 1 31 31 H 1.08010 * 126.47365 * 179.89580 * 4 3 2 32 32 H 1.07999 * 118.83362 * 179.97438 * 7 6 5 33 33 H 0.96997 * 119.99950 * 5.55964 * 16 15 13 34 34 H 1.08997 * 109.46935 * 53.27013 * 21 11 10 35 35 H 1.08994 * 109.47189 * 173.27276 * 21 11 10 36 36 H 1.09001 * 109.46958 * 49.52369 * 23 22 21 37 37 H 1.08995 * 109.46722 * 169.52242 * 23 22 21 38 38 H 1.09002 * 109.46786 * 289.52202 * 23 22 21 39 39 H 1.09000 * 109.47673 * 59.99883 * 24 22 21 40 40 H 1.08997 * 109.47393 * 180.02562 * 24 22 21 41 41 H 1.09005 * 109.47358 * 300.00112 * 24 22 21 42 42 H 1.09002 * 109.46830 * 60.00441 * 25 22 21 43 43 H 1.08997 * 109.46803 * 180.02562 * 25 22 21 44 44 H 1.08992 * 109.47072 * 299.99892 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2493 1.1161 0.0000 4 6 3.5483 0.7632 0.0114 5 6 3.5954 -0.6952 0.0052 6 7 4.5709 -1.6066 -0.0005 7 6 4.2825 -2.8893 -0.0058 8 7 3.0381 -3.3342 -0.0062 9 6 2.0055 -2.4998 -0.0008 10 8 0.7350 -2.9715 -0.0019 11 6 0.5700 -4.3909 -0.0085 12 1 1.4125 -4.8571 0.5023 13 6 0.5105 -4.8831 -1.4316 14 1 1.2182 -5.6221 -1.7774 15 6 -0.4471 -4.3900 -2.2922 16 7 -1.2422 -3.4171 -1.9035 17 14 -0.6156 -5.1038 -4.0102 18 1 0.3903 -6.1797 -4.2000 19 1 -1.9797 -5.6651 -4.1815 20 1 -0.3908 -4.0337 -5.0150 21 6 -0.7291 -4.7567 0.7123 22 7 -0.6091 -4.4222 2.1376 23 6 -0.4956 -2.9656 2.2910 24 6 -1.7995 -4.8988 2.8543 25 6 0.5879 -5.0678 2.6930 26 6 2.2558 -1.1254 0.0005 27 1 -0.3633 0.0001 1.0276 28 1 -0.3633 0.8899 -0.5139 29 1 -0.3633 -0.8900 -0.5138 30 1 1.8825 2.1319 -0.0007 31 1 4.3957 1.4329 0.0126 32 1 5.0914 -3.6050 -0.0107 33 1 -1.1033 -2.9918 -1.0429 34 1 -1.5565 -4.1971 0.2762 35 1 -0.9161 -5.8251 0.6043 36 1 -1.2852 -2.4776 1.7195 37 1 -0.5936 -2.7025 3.3441 38 1 0.4761 -2.6362 1.9230 39 1 -1.8838 -5.9795 2.7406 40 1 -1.7108 -4.6502 3.9118 41 1 -2.6878 -4.4198 2.4422 42 1 1.4712 -4.7142 2.1612 43 1 0.6766 -4.8200 3.7507 44 1 0.5037 -6.1485 2.5793 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001229016827.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:18 Heat of formation + Delta-G solvation = 157.176430 kcal Electronic energy + Delta-G solvation = -27384.699256 eV Core-core repulsion = 23843.343938 eV Total energy + Delta-G solvation = -3541.355319 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 305.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.22475 -42.69760 -40.17596 -39.07981 -35.68892 -34.15665 -32.55868 -31.91512 -30.70046 -29.75908 -29.66576 -27.77487 -27.41776 -25.41689 -24.69050 -24.19564 -22.51456 -21.51165 -20.03258 -19.40599 -19.14196 -18.03674 -18.02943 -17.68395 -17.59670 -17.05294 -16.10673 -15.94638 -15.80914 -15.65885 -14.89761 -14.73307 -14.60370 -14.42476 -14.20653 -14.00168 -13.63554 -13.52701 -13.49328 -13.42022 -13.36842 -13.28507 -13.13727 -13.01624 -12.83473 -12.78667 -12.35976 -12.13263 -11.67923 -11.48697 -10.86540 -10.60042 -10.22641 -9.75421 -8.89254 -8.69306 -6.64358 -0.05388 0.20863 0.76901 1.44200 1.55769 1.56774 1.65731 1.70689 1.89685 2.35133 2.64502 2.85919 2.87583 2.93778 3.05327 3.15428 3.22617 3.57719 3.68797 3.77779 3.85765 4.00053 4.04303 4.11895 4.14291 4.23585 4.28916 4.31021 4.36336 4.41205 4.45016 4.59709 4.61888 4.70125 4.70911 4.73817 4.75807 4.88547 5.18875 5.39658 5.56016 5.72574 5.95712 6.05339 6.15953 6.31260 6.53865 7.12017 7.26196 8.66128 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.455 5.455 3 C 0.105 3.895 4 C -0.227 4.227 5 C 0.108 3.892 6 N -0.539 5.539 7 C 0.296 3.704 8 N -0.573 5.573 9 C 0.393 3.607 10 O -0.306 6.306 11 C 0.173 3.827 12 H 0.086 0.914 13 C -0.620 4.620 14 H 0.044 0.956 15 C 0.026 3.974 16 N -0.899 5.899 17 Si 1.077 2.923 18 H -0.286 1.286 19 H -0.273 1.273 20 H -0.304 1.304 21 C 0.015 3.985 22 N -0.258 5.258 23 C -0.046 4.046 24 C -0.045 4.045 25 C -0.051 4.051 26 C -0.053 4.053 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.073 0.927 30 H 0.225 0.775 31 H 0.168 0.832 32 H 0.216 0.784 33 H 0.286 0.714 34 H 0.118 0.882 35 H 0.148 0.852 36 H 0.113 0.887 37 H 0.148 0.852 38 H 0.089 0.911 39 H 0.128 0.872 40 H 0.145 0.855 41 H 0.117 0.883 42 H 0.088 0.912 43 H 0.147 0.853 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.472 0.104 19.801 20.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.137 5.137 3 C -0.027 4.027 4 C -0.253 4.253 5 C -0.027 4.027 6 N -0.259 5.259 7 C 0.006 3.994 8 N -0.306 5.306 9 C 0.197 3.803 10 O -0.211 6.211 11 C 0.119 3.881 12 H 0.104 0.896 13 C -0.658 4.658 14 H 0.062 0.938 15 C -0.182 4.182 16 N -0.536 5.536 17 Si 0.905 3.095 18 H -0.211 1.211 19 H -0.199 1.199 20 H -0.232 1.232 21 C -0.106 4.106 22 N 0.084 4.916 23 C -0.187 4.187 24 C -0.185 4.185 25 C -0.192 4.192 26 C -0.164 4.164 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.091 0.909 30 H 0.242 0.758 31 H 0.186 0.814 32 H 0.232 0.768 33 H 0.100 0.900 34 H 0.136 0.864 35 H 0.165 0.835 36 H 0.131 0.869 37 H 0.166 0.834 38 H 0.107 0.893 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.135 0.865 42 H 0.106 0.894 43 H 0.165 0.835 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.315 -0.307 18.457 19.856 hybrid contribution 0.818 0.215 0.200 0.869 sum -6.496 -0.093 18.658 19.756 Atomic orbital electron populations 1.22368 0.74349 1.05493 1.04839 1.43848 1.07419 1.03065 1.59357 1.22778 0.89222 0.92845 0.97905 1.21759 0.97988 0.89705 1.15863 1.20654 0.86672 0.95923 0.99491 1.67909 1.36676 1.02478 1.18796 1.24868 0.91959 0.90355 0.92223 1.68151 1.00417 1.38146 1.23892 1.19148 0.86413 0.85762 0.88958 1.86343 1.20103 1.29401 1.85242 1.20612 0.94389 0.76415 0.96672 0.89610 1.22283 1.19157 1.27358 0.97042 0.93773 1.26059 0.92309 0.94710 1.05084 1.70934 1.37737 1.21079 1.23858 0.83343 0.77001 0.75485 0.73692 1.21139 1.19854 1.23192 1.24226 1.02209 1.07147 0.77062 1.46003 1.16314 1.15066 1.14201 1.24312 1.07875 0.77649 1.08913 1.24319 0.86457 1.06204 1.01523 1.24263 0.87022 1.03461 1.04460 1.19084 0.93652 0.88101 1.15589 0.88135 0.87704 0.90861 0.75832 0.81430 0.76799 0.89993 0.86369 0.83465 0.86850 0.83418 0.89280 0.85359 0.83713 0.86467 0.89371 0.83474 0.84798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 -0.27 10.82 127.77 1.38 1.11 16 2 N -0.46 -1.07 3.17 -538.89 -1.71 -2.78 16 3 C 0.10 -0.07 11.29 83.15 0.94 0.87 16 4 C -0.23 -1.23 11.07 23.43 0.26 -0.97 16 5 C 0.11 1.32 7.57 41.48 0.31 1.63 16 6 N -0.54 -7.63 10.50 -190.18 -2.00 -9.63 16 7 C 0.30 3.21 12.26 180.87 2.22 5.43 16 8 N -0.57 -6.34 8.80 -312.65 -2.75 -9.09 16 9 C 0.39 3.78 6.76 84.90 0.57 4.35 16 10 O -0.31 -1.53 3.65 -88.31 -0.32 -1.85 16 11 C 0.17 0.65 1.59 29.85 0.05 0.70 16 12 H 0.09 0.20 4.71 -2.39 -0.01 0.19 16 13 C -0.62 -10.93 8.88 25.60 0.23 -10.70 16 14 H 0.04 1.02 7.82 -2.91 -0.02 1.00 16 15 C 0.03 0.56 5.22 84.65 0.44 1.00 16 16 N -0.90 -18.25 12.82 21.45 0.27 -17.97 16 17 Si 1.08 22.19 29.91 68.60 2.05 24.25 16 18 H -0.29 -5.94 7.11 99.48 0.71 -5.23 16 19 H -0.27 -5.32 7.11 99.48 0.71 -4.62 16 20 H -0.30 -7.42 7.11 99.48 0.71 -6.71 16 21 C 0.01 -0.13 3.52 86.30 0.30 0.17 16 22 N -0.26 5.70 0.05 ******* -0.07 5.63 16 23 C -0.05 0.94 7.22 127.69 0.92 1.86 16 24 C -0.05 1.33 7.99 127.69 1.02 2.35 16 25 C -0.05 1.18 7.49 127.69 0.96 2.13 16 26 C -0.05 -0.49 6.85 39.20 0.27 -0.23 16 27 H 0.10 -1.10 8.14 -2.39 -0.02 -1.12 16 28 H 0.10 -0.76 8.13 -2.39 -0.02 -0.78 16 29 H 0.07 0.19 6.54 -2.39 -0.02 0.17 16 30 H 0.23 -2.35 8.06 -2.91 -0.02 -2.37 16 31 H 0.17 0.37 8.06 -2.91 -0.02 0.35 16 32 H 0.22 0.93 8.06 -2.91 -0.02 0.91 16 33 H 0.29 4.08 4.41 -92.71 -0.41 3.67 16 34 H 0.12 -0.52 5.84 -2.39 -0.01 -0.54 16 35 H 0.15 -1.66 8.07 -2.39 -0.02 -1.68 16 36 H 0.11 -2.18 7.90 -2.39 -0.02 -2.20 16 37 H 0.15 -4.20 7.98 -2.39 -0.02 -4.21 16 38 H 0.09 -1.12 5.08 -2.39 -0.01 -1.13 16 39 H 0.13 -3.93 8.11 -2.39 -0.02 -3.95 16 40 H 0.14 -5.03 8.06 -2.39 -0.02 -5.05 16 41 H 0.12 -3.32 8.14 -2.38 -0.02 -3.34 16 42 H 0.09 -1.31 5.83 -2.39 -0.01 -1.32 16 43 H 0.15 -4.35 8.14 -2.39 -0.02 -4.37 16 44 H 0.13 -3.41 8.14 -2.39 -0.02 -3.43 16 Total: 0.00 -54.20 343.95 6.71 -47.49 By element: Atomic # 1 Polarization: -47.11 SS G_CDS: 1.36 Total: -45.75 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 9.87 Total: 9.71 kcal Atomic # 7 Polarization: -27.60 SS G_CDS: -6.25 Total: -33.84 kcal Atomic # 8 Polarization: -1.53 SS G_CDS: -0.32 Total: -1.85 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: 2.05 Total: 24.25 kcal Total: -54.20 6.71 -47.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229016827.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 204.662 kcal (2) G-P(sol) polarization free energy of solvation -54.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds