Wall clock time and date at job start Tue Mar 31 2020 10:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 116.99496 * 2 1 4 4 C 1.38754 * 120.05815 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94199 * 179.74804 * 4 3 2 6 6 C 1.38282 * 120.05510 * 0.54231 * 5 4 3 7 7 C 1.50703 * 119.94303 * 179.72410 * 6 5 4 8 8 N 1.46900 * 109.47324 * 269.73240 * 7 6 5 9 9 C 1.47014 * 111.00019 * 170.00043 * 8 7 6 10 10 C 1.53096 * 109.25675 * 182.39166 * 9 8 7 11 11 O 1.43015 * 109.25724 * 303.14825 * 10 9 8 12 12 C 1.43010 * 113.73980 * 58.67537 * 11 10 9 13 13 C 1.47017 * 110.99765 * 293.63419 * 8 7 6 14 14 C 1.38242 * 120.11531 * 359.45942 * 6 5 4 15 15 C 1.38171 * 120.05348 * 0.26483 * 14 6 5 16 16 C 1.50700 * 120.02833 * 180.02562 * 15 14 6 17 17 C 1.53003 * 109.47116 * 265.00327 * 16 15 14 18 18 C 1.50697 * 109.47452 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99544 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99932 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47409 * 59.99633 * 22 20 18 24 24 H 1.48496 * 109.47155 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47185 * 299.99665 * 22 20 18 26 26 H 1.09009 * 109.46812 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47726 * 300.00137 * 1 2 3 28 28 H 1.09004 * 109.47514 * 60.00304 * 1 2 3 29 29 H 1.08001 * 120.02572 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.96860 * 180.27135 * 5 4 3 31 31 H 1.08999 * 109.47040 * 149.72680 * 7 6 5 32 32 H 1.09002 * 109.46831 * 29.73327 * 7 6 5 33 33 H 1.09004 * 109.50706 * 62.45483 * 9 8 7 34 34 H 1.09000 * 109.50503 * 302.32270 * 9 8 7 35 35 H 1.08997 * 109.50375 * 183.21864 * 10 9 8 36 36 H 1.08996 * 109.54637 * 63.10402 * 10 9 8 37 37 H 1.08993 * 109.51045 * 61.26026 * 12 11 10 38 38 H 1.08999 * 109.51323 * 181.39624 * 12 11 10 39 39 H 1.09006 * 109.50736 * 297.54404 * 13 8 7 40 40 H 1.08995 * 109.50709 * 57.63009 * 13 8 7 41 41 H 1.08000 * 119.97581 * 180.29306 * 14 6 5 42 42 H 1.09000 * 109.47117 * 24.99783 * 16 15 14 43 43 H 1.08994 * 109.47383 * 145.00164 * 16 15 14 44 44 H 1.09008 * 109.46935 * 299.99958 * 17 16 15 45 45 H 1.09007 * 109.47310 * 59.99380 * 17 16 15 46 46 H 0.96993 * 120.00251 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2110 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9207 3.6048 0.0047 6 6 3.3016 3.6759 -0.0008 7 6 3.9858 5.0187 -0.0013 8 7 4.2082 5.4545 -1.3865 9 6 4.6540 6.8546 -1.4332 10 6 4.8158 7.2845 -2.8936 11 8 5.7329 6.4023 -3.5462 12 6 5.3295 5.0305 -3.5202 13 6 5.1728 4.5776 -2.0661 14 6 4.0558 2.5173 -0.0003 15 6 3.4310 1.2849 0.0002 16 6 4.2537 0.0223 0.0013 17 6 4.4274 -0.4745 -1.4354 18 6 5.2496 -1.7374 -1.4343 19 1 5.6123 -2.1448 -0.5022 20 6 5.5396 -2.3722 -2.6234 21 7 5.0984 -1.8759 -3.7585 22 14 6.5581 -3.9381 -2.6219 23 1 5.8657 -4.9782 -1.8195 24 1 6.7278 -4.4195 -4.0164 25 1 7.8911 -3.6611 -2.0287 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.2126 2.3203 -0.0005 30 1 1.3337 4.5114 0.0087 31 1 4.9436 4.9387 0.5127 32 1 3.3576 5.7466 0.5122 33 1 5.6098 6.9496 -0.9177 34 1 3.9129 7.4890 -0.9470 35 1 5.2009 8.3035 -2.9324 36 1 3.8494 7.2412 -3.3957 37 1 4.3777 4.9211 -4.0400 38 1 6.0860 4.4191 -4.0122 39 1 6.1369 4.6362 -1.5608 40 1 4.8108 3.5498 -2.0413 41 1 5.1342 2.5755 0.0001 42 1 5.2322 0.2266 0.4358 43 1 3.7465 -0.7413 0.5909 44 1 3.4489 -0.6787 -1.8701 45 1 4.9346 0.2893 -2.0251 46 1 5.3021 -2.3227 -4.5950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250059303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:49 Heat of formation + Delta-G solvation = -63.148426 kcal Electronic energy + Delta-G solvation = -25396.545703 eV Core-core repulsion = 21865.113802 eV Total energy + Delta-G solvation = -3531.431901 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.13601 -39.40896 -37.46754 -35.60297 -34.01530 -32.13588 -31.32712 -30.63751 -29.06755 -27.94836 -26.75794 -25.00563 -24.07605 -23.98282 -22.02565 -21.12899 -20.47046 -19.57819 -17.60826 -16.60449 -16.30423 -16.25990 -16.01746 -15.38015 -15.27373 -15.10608 -14.86767 -14.42723 -14.19079 -14.09880 -13.80923 -13.44409 -12.97929 -12.63898 -12.47896 -12.36543 -12.03942 -11.98037 -11.70006 -11.46635 -11.43978 -11.14136 -11.02796 -10.83820 -10.75635 -10.66388 -10.53936 -10.33957 -9.73676 -9.69271 -9.54501 -9.02834 -8.51085 -8.30421 -8.27481 -7.59453 -5.93196 -3.95387 1.67157 1.75459 3.37006 3.41138 3.43768 3.63881 3.69577 3.84930 4.22916 4.51308 4.74310 4.87078 4.95616 5.01390 5.08219 5.13096 5.20398 5.24876 5.30105 5.34337 5.40079 5.42279 5.50108 5.53564 5.59742 5.66198 5.68702 5.71836 5.89944 5.96362 5.98245 5.99652 6.25866 6.36845 6.63566 6.75717 6.80373 6.87647 6.92301 6.98926 7.10401 7.11032 7.24310 7.75944 7.79783 7.93904 8.08361 8.49094 9.11276 9.67756 11.17893 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.004346 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.575277 B = 6440.511302 C = 8385.378851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.302 6.302 3 C 0.130 3.870 4 C -0.211 4.211 5 C -0.076 4.076 6 C -0.121 4.121 7 C 0.104 3.896 8 N -0.532 5.532 9 C 0.017 3.983 10 C 0.064 3.936 11 O -0.388 6.388 12 C 0.064 3.936 13 C 0.014 3.986 14 C -0.080 4.080 15 C -0.086 4.086 16 C -0.071 4.071 17 C 0.035 3.965 18 C -0.519 4.519 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.277 1.277 26 H 0.096 0.904 27 H 0.048 0.952 28 H 0.052 0.948 29 H 0.122 0.878 30 H 0.117 0.883 31 H 0.041 0.959 32 H 0.079 0.921 33 H 0.041 0.959 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.101 0.899 39 H 0.042 0.958 40 H 0.099 0.901 41 H 0.122 0.878 42 H 0.055 0.945 43 H 0.062 0.938 44 H 0.019 0.981 45 H 0.013 0.987 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.623 16.857 6.695 19.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.215 6.215 3 C 0.084 3.916 4 C -0.230 4.230 5 C -0.095 4.095 6 C -0.122 4.122 7 C -0.023 4.023 8 N -0.257 5.257 9 C -0.111 4.111 10 C -0.013 4.013 11 O -0.307 6.307 12 C -0.013 4.013 13 C -0.114 4.114 14 C -0.098 4.098 15 C -0.087 4.087 16 C -0.108 4.108 17 C -0.002 4.002 18 C -0.557 4.557 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.203 1.203 26 H 0.115 0.885 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.059 0.941 32 H 0.097 0.903 33 H 0.059 0.941 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.060 0.940 40 H 0.117 0.883 41 H 0.140 0.860 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.038 0.962 45 H 0.031 0.969 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.811 16.668 6.160 19.030 hybrid contribution 0.700 -0.805 0.442 1.155 sum -6.111 15.863 6.603 18.236 Atomic orbital electron populations 1.22991 0.79438 1.03606 1.00628 1.86218 1.20333 1.26622 1.88283 1.18914 0.92007 0.84046 0.96634 1.21117 0.99485 0.92424 1.09928 1.20539 0.93608 0.96463 0.98882 1.19419 0.93612 0.93812 1.05327 1.20919 0.98752 0.94125 0.88486 1.62249 1.45763 1.01677 1.15997 1.22781 0.99626 0.90491 0.98187 1.22617 0.93978 0.93606 0.91101 1.87972 1.47732 1.17626 1.77364 1.22705 1.01182 0.81996 0.95408 1.22900 0.94194 0.99097 0.95235 1.20767 0.99400 0.90668 0.98981 1.19717 0.90827 0.96889 1.01258 1.20668 0.96506 0.91718 1.01904 1.19010 0.97076 0.95375 0.88784 1.21221 1.32698 1.09140 0.92640 0.92787 1.24993 0.96137 0.97497 0.95667 1.69960 1.45923 1.39953 0.97606 0.86695 0.80797 0.83827 0.76887 1.20278 1.21336 1.20292 0.88531 0.93299 0.92983 0.86035 0.86529 0.94084 0.90282 0.94109 0.89876 0.88798 0.92383 0.92135 0.88059 0.93986 0.88253 0.85994 0.92624 0.91893 0.96249 0.96863 0.93047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.81 101.05 0.99 1.36 16 2 O -0.30 -5.50 9.63 -19.43 -0.19 -5.69 16 3 C 0.13 2.32 6.66 -39.21 -0.26 2.06 16 4 C -0.21 -3.14 9.04 -39.43 -0.36 -3.49 16 5 C -0.08 -1.06 9.69 -39.61 -0.38 -1.44 16 6 C -0.12 -1.73 4.90 -104.60 -0.51 -2.25 16 7 C 0.10 1.24 5.11 -4.97 -0.03 1.21 16 8 N -0.53 -6.61 4.72 -235.74 -1.11 -7.72 16 9 C 0.02 0.18 5.64 -3.71 -0.02 0.16 16 10 C 0.06 0.66 7.01 37.21 0.26 0.92 16 11 O -0.39 -5.14 10.83 -35.23 -0.38 -5.52 16 12 C 0.06 0.84 7.01 37.21 0.26 1.10 16 13 C 0.01 0.19 5.27 -3.71 -0.02 0.17 16 14 C -0.08 -1.32 7.56 -39.60 -0.30 -1.62 16 15 C -0.09 -1.65 5.15 -104.47 -0.54 -2.18 16 16 C -0.07 -1.54 5.01 -27.88 -0.14 -1.68 16 17 C 0.03 0.92 4.95 -27.88 -0.14 0.78 16 18 C -0.52 -14.97 9.11 -34.44 -0.31 -15.29 16 19 H 0.05 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 21 N -0.90 -27.30 13.29 55.43 0.74 -26.56 16 22 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 26 H 0.10 1.06 8.14 -51.92 -0.42 0.64 16 27 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 28 H 0.05 0.61 7.66 -51.93 -0.40 0.21 16 29 H 0.12 1.50 6.30 -52.49 -0.33 1.17 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.04 0.48 8.06 -51.93 -0.42 0.06 16 32 H 0.08 0.80 7.98 -51.93 -0.41 0.38 16 33 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 38 H 0.10 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.10 1.57 6.01 -51.93 -0.31 1.25 16 41 H 0.12 1.93 8.00 -52.49 -0.42 1.51 16 42 H 0.06 1.15 8.05 -51.93 -0.42 0.74 16 43 H 0.06 1.40 7.69 -51.93 -0.40 1.00 16 44 H 0.02 0.56 8.14 -51.92 -0.42 0.14 16 45 H 0.01 0.37 8.14 -51.92 -0.42 -0.06 16 46 H 0.26 7.49 8.31 -40.82 -0.34 7.16 16 LS Contribution 369.60 15.07 5.57 5.57 Total: -1.00 -32.66 369.60 -9.69 -42.34 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: -7.70 Total: -0.76 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.59 Total: -18.59 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: -0.38 Total: -34.28 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: -0.57 Total: -11.21 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.66 -9.69 -42.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.807 kcal (2) G-P(sol) polarization free energy of solvation -32.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds