Wall clock time and date at job start Tue Mar 31 2020 10:27:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35903 * 116.99496 * 2 1 4 4 C 1.38754 * 120.05815 * 359.97438 * 3 2 1 5 5 C 1.38127 * 119.94199 * 179.74804 * 4 3 2 6 6 C 1.38282 * 120.05510 * 0.54231 * 5 4 3 7 7 C 1.50703 * 119.94303 * 179.72410 * 6 5 4 8 8 N 1.46900 * 109.47324 * 269.73240 * 7 6 5 9 9 C 1.47014 * 111.00019 * 170.00043 * 8 7 6 10 10 C 1.53096 * 109.25675 * 182.39166 * 9 8 7 11 11 O 1.43015 * 109.25724 * 303.14825 * 10 9 8 12 12 C 1.43010 * 113.73980 * 58.67537 * 11 10 9 13 13 C 1.47017 * 110.99765 * 293.63419 * 8 7 6 14 14 C 1.38242 * 120.11531 * 359.45942 * 6 5 4 15 15 C 1.38171 * 120.05348 * 0.26483 * 14 6 5 16 16 C 1.50700 * 120.02833 * 180.02562 * 15 14 6 17 17 C 1.53003 * 109.47116 * 265.00327 * 16 15 14 18 18 C 1.50697 * 109.47452 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99544 * 359.97438 * 18 17 16 20 20 C 1.37871 * 120.00102 * 180.02562 * 18 17 16 21 21 N 1.31514 * 120.00373 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99932 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.47409 * 59.99633 * 22 20 18 24 24 H 1.48496 * 109.47155 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.47185 * 299.99665 * 22 20 18 26 26 H 1.09009 * 109.46812 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47726 * 300.00137 * 1 2 3 28 28 H 1.09004 * 109.47514 * 60.00304 * 1 2 3 29 29 H 1.08001 * 120.02572 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.96860 * 180.27135 * 5 4 3 31 31 H 1.08999 * 109.47040 * 149.72680 * 7 6 5 32 32 H 1.09002 * 109.46831 * 29.73327 * 7 6 5 33 33 H 1.09004 * 109.50706 * 62.45483 * 9 8 7 34 34 H 1.09000 * 109.50503 * 302.32270 * 9 8 7 35 35 H 1.08997 * 109.50375 * 183.21864 * 10 9 8 36 36 H 1.08996 * 109.54637 * 63.10402 * 10 9 8 37 37 H 1.08993 * 109.51045 * 61.26026 * 12 11 10 38 38 H 1.08999 * 109.51323 * 181.39624 * 12 11 10 39 39 H 1.09006 * 109.50736 * 297.54404 * 13 8 7 40 40 H 1.08995 * 109.50709 * 57.63009 * 13 8 7 41 41 H 1.08000 * 119.97581 * 180.29306 * 14 6 5 42 42 H 1.09000 * 109.47117 * 24.99783 * 16 15 14 43 43 H 1.08994 * 109.47383 * 145.00164 * 16 15 14 44 44 H 1.09008 * 109.46935 * 299.99958 * 17 16 15 45 45 H 1.09007 * 109.47310 * 59.99380 * 17 16 15 46 46 H 0.96993 * 120.00251 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2110 0.0000 4 6 1.2912 2.3753 -0.0005 5 6 1.9207 3.6048 0.0047 6 6 3.3016 3.6759 -0.0008 7 6 3.9858 5.0187 -0.0013 8 7 4.2082 5.4545 -1.3865 9 6 4.6540 6.8546 -1.4332 10 6 4.8158 7.2845 -2.8936 11 8 5.7329 6.4023 -3.5462 12 6 5.3295 5.0305 -3.5202 13 6 5.1728 4.5776 -2.0661 14 6 4.0558 2.5173 -0.0003 15 6 3.4310 1.2849 0.0002 16 6 4.2537 0.0223 0.0013 17 6 4.4274 -0.4745 -1.4354 18 6 5.2496 -1.7374 -1.4343 19 1 5.6123 -2.1448 -0.5022 20 6 5.5396 -2.3722 -2.6234 21 7 5.0984 -1.8759 -3.7585 22 14 6.5581 -3.9381 -2.6219 23 1 5.8657 -4.9782 -1.8195 24 1 6.7278 -4.4195 -4.0164 25 1 7.8911 -3.6611 -2.0287 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 0.2126 2.3203 -0.0005 30 1 1.3337 4.5114 0.0087 31 1 4.9436 4.9387 0.5127 32 1 3.3576 5.7466 0.5122 33 1 5.6098 6.9496 -0.9177 34 1 3.9129 7.4890 -0.9470 35 1 5.2009 8.3035 -2.9324 36 1 3.8494 7.2412 -3.3957 37 1 4.3777 4.9211 -4.0400 38 1 6.0860 4.4191 -4.0122 39 1 6.1369 4.6362 -1.5608 40 1 4.8108 3.5498 -2.0413 41 1 5.1342 2.5755 0.0001 42 1 5.2322 0.2266 0.4358 43 1 3.7465 -0.7413 0.5909 44 1 3.4489 -0.6787 -1.8701 45 1 4.9346 0.2893 -2.0251 46 1 5.3021 -2.3227 -4.5950 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250059303.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:48 Heat of formation + Delta-G solvation = -84.227293 kcal Electronic energy + Delta-G solvation = -25397.459751 eV Core-core repulsion = 21865.113802 eV Total energy + Delta-G solvation = -3532.345949 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.32344 -40.43337 -38.64026 -36.73968 -35.83262 -34.01752 -32.26937 -31.75478 -30.80082 -28.99042 -27.87350 -26.88754 -25.09549 -24.96072 -23.69749 -22.54278 -21.50668 -20.94598 -18.87502 -18.45586 -17.55175 -17.43475 -17.08204 -16.63887 -16.46464 -16.32583 -16.00947 -15.87890 -15.35827 -15.19634 -14.96228 -14.71808 -14.49759 -14.30880 -14.08087 -13.60837 -13.33818 -13.12732 -12.97672 -12.80787 -12.70476 -12.54088 -12.51462 -12.36616 -12.06640 -11.89777 -11.84170 -11.63672 -11.52105 -11.49126 -11.09809 -10.67832 -10.54419 -9.68441 -9.39824 -8.88099 -8.18180 -6.30479 0.44748 0.50625 1.38749 1.42542 1.50414 2.41023 2.50886 2.63722 2.90514 3.12884 3.13797 3.78087 3.86567 3.94275 3.98222 4.03430 4.13033 4.20280 4.30252 4.34668 4.38957 4.41337 4.44481 4.55509 4.62355 4.65282 4.70016 4.73521 4.74612 4.80088 4.83046 4.89583 4.92129 5.01655 5.05600 5.28399 5.39275 5.43150 5.50883 5.66050 5.80317 5.84897 5.91534 5.95711 6.04127 6.17102 6.24718 6.60052 6.85320 7.38237 8.93111 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010810 B = 0.004346 C = 0.003338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2589.575277 B = 6440.511302 C = 8385.378851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.340 6.340 3 C 0.111 3.889 4 C -0.207 4.207 5 C -0.066 4.066 6 C -0.118 4.118 7 C 0.107 3.893 8 N -0.538 5.538 9 C 0.019 3.981 10 C 0.057 3.943 11 O -0.404 6.404 12 C 0.066 3.934 13 C 0.019 3.981 14 C -0.083 4.083 15 C -0.126 4.126 16 C -0.054 4.054 17 C 0.048 3.952 18 C -0.545 4.545 19 H 0.059 0.941 20 C 0.002 3.998 21 N -0.932 5.932 22 Si 0.965 3.035 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.265 1.265 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.060 0.940 29 H 0.151 0.849 30 H 0.153 0.847 31 H 0.042 0.958 32 H 0.110 0.890 33 H 0.040 0.960 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.098 0.902 39 H 0.038 0.962 40 H 0.071 0.929 41 H 0.118 0.882 42 H 0.058 0.942 43 H 0.052 0.948 44 H -0.016 1.016 45 H -0.014 1.014 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.435 18.694 7.727 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.254 6.254 3 C 0.066 3.934 4 C -0.226 4.226 5 C -0.084 4.084 6 C -0.119 4.119 7 C -0.020 4.020 8 N -0.263 5.263 9 C -0.108 4.108 10 C -0.019 4.019 11 O -0.323 6.323 12 C -0.011 4.011 13 C -0.110 4.110 14 C -0.102 4.102 15 C -0.126 4.126 16 C -0.091 4.091 17 C 0.011 3.989 18 C -0.583 4.583 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.572 5.572 22 Si 0.789 3.211 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.190 1.190 26 H 0.126 0.874 27 H 0.093 0.907 28 H 0.078 0.922 29 H 0.169 0.831 30 H 0.171 0.829 31 H 0.060 0.940 32 H 0.128 0.872 33 H 0.059 0.941 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.116 0.884 39 H 0.056 0.944 40 H 0.090 0.910 41 H 0.136 0.864 42 H 0.077 0.923 43 H 0.070 0.930 44 H 0.002 0.998 45 H 0.005 0.995 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.633 18.520 7.211 21.289 hybrid contribution 0.875 -1.279 0.107 1.554 sum -6.758 17.240 7.319 19.911 Atomic orbital electron populations 1.23291 0.76901 1.05036 1.02203 1.86154 1.23201 1.27486 1.88555 1.19123 0.91865 0.85106 0.97336 1.21441 1.00846 0.91605 1.08664 1.20993 0.93552 0.97383 0.96515 1.19697 0.94108 0.94152 1.03943 1.20977 0.99204 0.93316 0.88491 1.62246 1.45317 1.02665 1.16119 1.22879 1.00501 0.89186 0.98279 1.22890 0.93819 0.94206 0.91007 1.87951 1.48871 1.17514 1.77969 1.22613 1.00858 0.82535 0.95055 1.22735 0.94263 0.98127 0.95851 1.20813 0.99503 0.90888 0.98953 1.19591 0.91668 0.96274 1.05093 1.20309 0.97281 0.93265 0.98242 1.18777 0.94370 0.94316 0.91445 1.21655 1.33286 1.10159 0.93169 0.92315 1.25965 0.97243 1.01269 0.95062 1.70107 1.47089 1.41681 0.98345 0.85513 0.79241 0.79072 0.77296 1.19231 1.20624 1.19021 0.87405 0.90735 0.92171 0.83129 0.82902 0.93981 0.87214 0.94146 0.87005 0.86178 0.92189 0.92568 0.88408 0.94415 0.91012 0.86410 0.92324 0.92975 0.99774 0.99536 0.92791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 9.81 113.37 1.11 1.60 16 2 O -0.34 -12.77 9.63 -92.46 -0.89 -13.66 16 3 C 0.11 4.05 6.66 22.51 0.15 4.20 16 4 C -0.21 -5.79 9.04 22.37 0.20 -5.58 16 5 C -0.07 -1.64 9.69 22.25 0.22 -1.42 16 6 C -0.12 -3.21 4.90 -19.85 -0.10 -3.31 16 7 C 0.11 2.26 5.11 85.56 0.44 2.70 16 8 N -0.54 -12.31 4.72 -899.75 -4.24 -16.56 16 9 C 0.02 0.33 5.64 86.31 0.49 0.82 16 10 C 0.06 1.04 7.01 72.01 0.50 1.54 16 11 O -0.40 -10.33 10.83 -148.98 -1.61 -11.94 16 12 C 0.07 1.78 7.01 72.02 0.50 2.28 16 13 C 0.02 0.52 5.27 86.32 0.46 0.97 16 14 C -0.08 -2.82 7.56 22.25 0.17 -2.65 16 15 C -0.13 -5.01 5.15 -19.77 -0.10 -5.12 16 16 C -0.05 -2.49 5.01 29.85 0.15 -2.34 16 17 C 0.05 2.74 4.95 29.85 0.15 2.89 16 18 C -0.54 -32.71 9.11 25.60 0.23 -32.48 16 19 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 20 C 0.00 0.14 5.46 84.65 0.46 0.60 16 21 N -0.93 -58.77 13.29 21.45 0.28 -58.48 16 22 Si 0.96 45.66 29.54 68.60 2.03 47.69 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 24 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 25 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 26 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 27 H 0.07 1.42 7.66 -2.39 -0.02 1.40 16 28 H 0.06 1.35 7.66 -2.38 -0.02 1.33 16 29 H 0.15 3.23 6.30 -2.91 -0.02 3.22 16 30 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 31 H 0.04 0.90 8.06 -2.39 -0.02 0.88 16 32 H 0.11 1.70 7.98 -2.39 -0.02 1.68 16 33 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 1.32 8.09 -2.39 -0.02 1.30 16 35 H 0.12 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 38 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 39 H 0.04 1.05 8.14 -2.38 -0.02 1.03 16 40 H 0.07 2.38 6.01 -2.39 -0.01 2.37 16 41 H 0.12 3.94 8.00 -2.91 -0.02 3.92 16 42 H 0.06 2.59 8.05 -2.39 -0.02 2.57 16 43 H 0.05 2.46 7.69 -2.39 -0.02 2.45 16 44 H -0.02 -1.02 8.14 -2.38 -0.02 -1.04 16 45 H -0.01 -0.84 8.14 -2.38 -0.02 -0.86 16 46 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -74.02 369.60 1.54 -72.49 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: 0.94 Total: 15.76 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 5.03 Total: -35.30 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -3.96 Total: -75.04 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -2.50 Total: -25.60 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -74.02 1.54 -72.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250059303.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.739 kcal (2) G-P(sol) polarization free energy of solvation -74.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds