Wall clock time and date at job start Tue Mar 31 2020 08:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47640 * 2 1 4 4 C 1.46502 * 120.00039 * 270.00484 * 3 2 1 5 5 C 1.53000 * 109.46638 * 278.34522 * 4 3 2 6 6 C 1.34777 * 119.99811 * 89.99652 * 3 2 1 7 7 O 1.21547 * 120.00340 * 6.40287 * 6 3 2 8 8 C 1.47859 * 119.99515 * 186.40023 * 6 3 2 9 9 C 1.39602 * 120.11999 * 330.49207 * 8 6 3 10 10 C 1.37965 * 119.96522 * 179.97438 * 9 8 6 11 11 C 1.38288 * 120.20798 * 359.74222 * 10 9 8 12 12 C 1.50701 * 119.87905 * 180.25572 * 11 10 9 13 13 C 1.52997 * 109.47162 * 265.25761 * 12 11 10 14 14 C 1.50701 * 109.47251 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00004 * 359.97438 * 14 13 12 16 16 C 1.37880 * 120.00020 * 180.02562 * 14 13 12 17 17 N 1.31509 * 120.00085 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 119.99706 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.46929 * 90.00219 * 18 16 14 20 20 H 1.48493 * 109.47115 * 209.99680 * 18 16 14 21 21 H 1.48496 * 109.47348 * 329.99936 * 18 16 14 22 22 C 1.38809 * 120.23547 * 0.51655 * 11 10 9 23 23 O 1.35916 * 119.98097 * 179.76312 * 22 11 10 24 24 C 1.42898 * 116.99755 * 179.72443 * 23 22 11 25 25 C 1.38494 * 120.03263 * 359.48417 * 22 11 10 26 26 H 1.09000 * 109.47032 * 59.99703 * 1 2 3 27 27 H 1.09003 * 109.47715 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47113 * 300.00265 * 1 2 3 29 29 H 1.09000 * 109.46809 * 239.99348 * 2 1 3 30 30 H 1.09000 * 109.47032 * 120.00297 * 2 1 3 31 31 H 1.08996 * 109.47183 * 38.33901 * 4 3 2 32 32 H 1.08991 * 109.47279 * 158.34285 * 4 3 2 33 33 H 1.08997 * 109.47752 * 59.99539 * 5 4 3 34 34 H 1.09001 * 109.47080 * 180.02562 * 5 4 3 35 35 H 1.09001 * 109.47104 * 299.99955 * 5 4 3 36 36 H 1.08000 * 120.01936 * 359.97438 * 9 8 6 37 37 H 1.08007 * 119.89648 * 180.02562 * 10 9 8 38 38 H 1.08998 * 109.47652 * 25.26134 * 12 11 10 39 39 H 1.09002 * 109.46885 * 145.26315 * 12 11 10 40 40 H 1.09004 * 109.47382 * 300.00289 * 13 12 11 41 41 H 1.09004 * 109.47461 * 60.00211 * 13 12 11 42 42 H 0.97001 * 119.99715 * 180.02562 * 17 16 14 43 43 H 1.09000 * 109.46834 * 180.02562 * 24 23 22 44 44 H 1.09000 * 109.47656 * 59.99882 * 24 23 22 45 45 H 1.09007 * 109.46834 * 299.99906 * 24 23 22 46 46 H 1.07997 * 120.10349 * 180.23573 * 25 22 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6327 1.6653 -1.8151 6 6 2.2430 2.0164 1.1672 7 8 2.1529 1.4098 2.2166 8 6 2.5992 3.4515 1.1711 9 6 3.2881 4.0053 0.0906 10 6 3.6183 5.3448 0.0974 11 6 3.2643 6.1433 1.1695 12 6 3.6237 7.6068 1.1665 13 6 4.9438 7.8093 1.9128 14 6 5.3029 9.2729 1.9103 15 1 4.6546 9.9872 1.4247 16 6 6.4597 9.7000 2.5272 17 7 7.2495 8.8302 3.1181 18 14 6.9051 11.5141 2.5236 19 1 6.3197 12.1699 3.7205 20 1 8.3825 11.6612 2.5515 21 1 6.3672 12.1535 1.2960 22 6 2.5838 5.6004 2.2507 23 8 2.2426 6.3889 3.3038 24 6 1.5383 5.7655 4.3796 25 6 2.2474 4.2570 2.2543 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.4894 1.7975 -1.9863 32 1 2.2414 3.1492 -1.1058 33 1 3.6539 0.5878 -1.9780 34 1 3.8146 2.1795 -2.7589 35 1 4.4059 1.9395 -1.0975 36 1 3.5625 3.3854 -0.7502 37 1 4.1510 5.7722 -0.7394 38 1 3.7307 7.9527 0.1384 39 1 2.8360 8.1754 1.6609 40 1 4.8368 7.4635 2.9409 41 1 5.7316 7.2408 1.4184 42 1 8.0631 9.1307 3.5524 43 1 1.3273 6.5047 5.1524 44 1 2.1487 4.9655 4.7984 45 1 0.6010 5.3510 4.0083 46 1 1.7146 3.8342 3.0932 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250060260.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:37:08 Heat of formation + Delta-G solvation = -53.703878 kcal Electronic energy + Delta-G solvation = -25278.020860 eV Core-core repulsion = 21746.998506 eV Total energy + Delta-G solvation = -3531.022355 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.91879 -40.62806 -38.37011 -37.43636 -36.00174 -34.26036 -33.14416 -31.43556 -30.80057 -30.34018 -28.28740 -27.27892 -24.90832 -24.56297 -23.53149 -23.16892 -21.95587 -20.64172 -19.04178 -18.55426 -17.88735 -17.32874 -17.10932 -16.72682 -16.66124 -16.45986 -16.18280 -15.34517 -15.07570 -14.81981 -14.68546 -14.50145 -14.22481 -14.18335 -13.90700 -13.70893 -13.44584 -13.32355 -12.95505 -12.85164 -12.82216 -12.62986 -12.51097 -12.37144 -12.18100 -12.11162 -11.93974 -11.79135 -11.65030 -11.51412 -11.21202 -10.84193 -10.53297 -9.95644 -9.69181 -9.09650 -8.16851 -6.28617 -0.16624 0.36922 1.41229 1.43118 1.54157 1.66366 1.92164 2.40105 2.42906 2.71746 3.15970 3.35159 3.78342 3.89121 3.94455 4.14417 4.16250 4.19126 4.19962 4.31013 4.34959 4.41589 4.49123 4.57541 4.59919 4.64428 4.66354 4.72795 4.78833 4.89308 4.90575 4.98497 5.01861 5.16449 5.19704 5.23875 5.26166 5.35737 5.41505 5.52919 5.57379 5.73908 5.81803 5.88222 6.25290 6.26103 6.42211 6.88287 7.02189 7.40302 8.94884 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.003207 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.294031 B = 8727.732742 C = 9477.305957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.105 3.895 3 N -0.599 5.599 4 C 0.061 3.939 5 C -0.180 4.180 6 C 0.560 3.440 7 O -0.580 6.580 8 C -0.121 4.121 9 C -0.138 4.138 10 C -0.091 4.091 11 C -0.092 4.092 12 C -0.058 4.058 13 C 0.042 3.958 14 C -0.539 4.539 15 H 0.063 0.937 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.966 3.034 19 H -0.275 1.275 20 H -0.282 1.282 21 H -0.259 1.259 22 C 0.107 3.893 23 O -0.330 6.330 24 C 0.020 3.980 25 C -0.161 4.161 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.031 0.969 29 H 0.110 0.890 30 H 0.064 0.936 31 H 0.105 0.895 32 H 0.110 0.890 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.050 0.950 36 H 0.190 0.810 37 H 0.157 0.843 38 H 0.076 0.924 39 H 0.056 0.944 40 H -0.018 1.018 41 H -0.008 1.008 42 H 0.262 0.738 43 H 0.117 0.883 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.864 -16.524 -11.806 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.330 5.330 4 C -0.060 4.060 5 C -0.238 4.238 6 C 0.350 3.650 7 O -0.462 6.462 8 C -0.125 4.125 9 C -0.156 4.156 10 C -0.109 4.109 11 C -0.093 4.093 12 C -0.095 4.095 13 C 0.005 3.995 14 C -0.577 4.577 15 H 0.082 0.918 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.790 3.210 19 H -0.201 1.201 20 H -0.208 1.208 21 H -0.183 1.183 22 C 0.062 3.938 23 O -0.243 6.243 24 C -0.075 4.075 25 C -0.181 4.181 26 H 0.088 0.912 27 H 0.103 0.897 28 H 0.050 0.950 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.115 0.885 35 H 0.069 0.931 36 H 0.206 0.794 37 H 0.175 0.825 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.000 1.000 41 H 0.010 0.990 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.071 0.929 45 H 0.087 0.913 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -13.747 -16.687 -11.165 24.333 hybrid contribution 0.425 0.659 0.990 1.263 sum -13.322 -16.028 -10.175 23.193 Atomic orbital electron populations 1.22090 0.95009 1.03218 1.01659 1.21612 0.95007 0.81205 1.03854 1.47982 1.64415 1.14782 1.05796 1.22746 0.99105 0.99946 0.84186 1.22310 0.95692 1.03467 1.02291 1.18450 0.76209 0.86533 0.83858 1.90717 1.54202 1.68250 1.32987 1.19663 1.03493 0.93020 0.96281 1.22498 0.98517 0.95803 0.98738 1.21210 0.98316 0.93440 0.97911 1.20007 0.97989 0.97971 0.93319 1.20428 0.97853 0.90141 1.01093 1.18840 0.91647 0.95351 0.93674 1.21692 1.06833 0.94203 1.34990 0.91847 1.26005 0.96342 1.02716 0.94864 1.70125 1.13864 1.36209 1.37361 0.85434 0.77248 0.79256 0.79030 1.20052 1.20764 1.18290 1.18919 0.96673 0.89512 0.88686 1.86179 1.72307 1.37829 1.28027 1.23296 0.95768 1.00176 0.88230 1.21209 1.04818 0.92101 0.99970 0.91190 0.89686 0.94954 0.87226 0.91762 0.87712 0.87213 0.90928 0.88456 0.93138 0.79351 0.82545 0.90543 0.92500 0.99989 0.98986 0.92879 0.86463 0.92875 0.91258 0.84740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.27 10.24 71.98 0.74 -1.54 16 2 C 0.10 1.67 6.19 86.38 0.53 2.21 16 3 N -0.60 -11.95 2.48 -825.24 -2.05 -14.00 16 4 C 0.06 0.80 5.58 86.38 0.48 1.28 16 5 C -0.18 -1.91 9.13 71.98 0.66 -1.26 16 6 C 0.56 16.32 7.46 86.79 0.65 16.97 16 7 O -0.58 -21.11 16.25 -3.86 -0.06 -21.17 16 8 C -0.12 -3.67 5.59 -20.10 -0.11 -3.78 16 9 C -0.14 -3.55 7.49 22.53 0.17 -3.38 16 10 C -0.09 -2.73 9.65 22.22 0.21 -2.51 16 11 C -0.09 -3.47 5.15 -19.72 -0.10 -3.58 16 12 C -0.06 -2.50 4.99 29.85 0.15 -2.35 16 13 C 0.04 2.31 4.95 29.85 0.15 2.46 16 14 C -0.54 -31.37 9.11 25.60 0.23 -31.14 16 15 H 0.06 3.50 7.74 -2.91 -0.02 3.47 16 16 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 17 N -0.94 -58.57 13.29 21.45 0.28 -58.28 16 18 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 19 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 20 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 21 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 22 C 0.11 4.04 6.65 22.47 0.15 4.19 16 23 O -0.33 -12.69 9.61 -92.60 -0.89 -13.58 16 24 C 0.02 0.55 9.81 113.37 1.11 1.66 16 25 C -0.16 -5.45 8.58 22.63 0.19 -5.25 16 26 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.03 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.11 1.04 7.86 -2.39 -0.02 1.02 16 30 H 0.06 1.32 7.34 -2.39 -0.02 1.30 16 31 H 0.10 0.83 8.13 -2.39 -0.02 0.81 16 32 H 0.11 1.64 4.02 -2.57 -0.01 1.63 16 33 H 0.07 0.66 7.93 -2.39 -0.02 0.64 16 34 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.74 7.07 -2.39 -0.02 0.73 16 36 H 0.19 3.46 2.52 -2.91 -0.01 3.45 16 37 H 0.16 3.92 8.06 -2.91 -0.02 3.90 16 38 H 0.08 2.98 8.05 -2.39 -0.02 2.96 16 39 H 0.06 2.51 7.68 -2.39 -0.02 2.50 16 40 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 41 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 42 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.05 1.46 7.66 -2.39 -0.02 1.44 16 45 H 0.07 1.62 7.66 -2.38 -0.02 1.60 16 46 H 0.13 4.35 6.15 -2.91 -0.02 4.33 16 Total: -1.00 -77.84 371.71 5.95 -71.89 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.97 Total: 13.87 kcal Atomic # 6 Polarization: -31.35 SS G_CDS: 5.68 Total: -25.67 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.76 Total: -72.28 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -0.95 Total: -34.75 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -77.84 5.95 -71.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250060260.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.185 kcal (2) G-P(sol) polarization free energy of solvation -77.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds