Wall clock time and date at job start Tue Mar 31 2020 10:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35997 * 116.99935 * 2 1 4 4 C 1.38563 * 120.07095 * 0.02562 * 3 2 1 5 5 C 1.38239 * 119.99655 * 180.02562 * 4 3 2 6 6 C 1.38256 * 120.14938 * 359.97180 * 5 4 3 7 7 C 1.38237 * 120.14156 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99741 * 180.02562 * 7 6 5 9 9 N 1.46906 * 109.46929 * 260.00175 * 8 7 6 10 10 C 1.46898 * 110.99888 * 66.04676 * 9 8 7 11 11 C 1.46902 * 110.99573 * 190.00042 * 9 8 7 12 12 C 1.50708 * 109.46760 * 169.99885 * 11 9 8 13 13 H 1.07997 * 120.00113 * 0.02562 * 12 11 9 14 14 C 1.37880 * 119.99808 * 179.97438 * 12 11 9 15 15 N 1.31517 * 119.99916 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99878 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47084 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47009 * 119.99701 * 16 14 12 19 19 H 1.48499 * 109.47361 * 240.00066 * 16 14 12 20 20 C 1.38561 * 120.00328 * 0.27774 * 7 6 5 21 21 O 1.35998 * 120.07590 * 179.74500 * 20 7 6 22 22 C 1.42906 * 116.99941 * 89.99840 * 21 20 7 23 23 C 1.52991 * 109.47063 * 180.02562 * 22 21 20 24 24 C 1.53001 * 117.50255 * 243.62273 * 23 22 21 25 25 C 1.52995 * 60.00181 * 252.50978 * 24 23 22 26 26 H 1.09001 * 109.47196 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46789 * 299.99810 * 1 2 3 28 28 H 1.09002 * 109.47369 * 59.99899 * 1 2 3 29 29 H 1.07999 * 120.00646 * 359.97322 * 4 3 2 30 30 H 1.08005 * 119.92971 * 179.97438 * 5 4 3 31 31 H 1.08001 * 119.92724 * 180.02562 * 6 5 4 32 32 H 1.08998 * 109.46946 * 140.00402 * 8 7 6 33 33 H 1.09000 * 109.47319 * 20.00201 * 8 7 6 34 34 H 1.08997 * 109.47334 * 60.00212 * 10 9 8 35 35 H 1.09000 * 109.46674 * 180.02562 * 10 9 8 36 36 H 1.08995 * 109.47296 * 299.99911 * 10 9 8 37 37 H 1.08993 * 109.47196 * 289.99473 * 11 9 8 38 38 H 1.09000 * 109.47010 * 50.00282 * 11 9 8 39 39 H 0.96996 * 119.99080 * 179.97438 * 15 14 12 40 40 H 1.08997 * 109.47065 * 300.00190 * 22 21 20 41 41 H 1.09000 * 109.46516 * 60.00080 * 22 21 20 42 42 H 1.09007 * 115.54991 * 29.33195 * 23 22 21 43 43 H 1.09004 * 117.49198 * 0.02562 * 24 23 22 44 44 H 1.08996 * 117.50272 * 145.01405 * 24 23 22 45 45 H 1.08996 * 117.49894 * 252.50967 * 25 24 23 46 46 H 1.09000 * 117.49754 * 107.48402 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2932 2.3748 0.0005 5 6 1.9224 3.6057 0.0000 6 6 3.3029 3.6798 -0.0005 7 6 4.0602 2.5234 -0.0010 8 6 5.5649 2.6080 -0.0009 9 7 6.0673 2.3960 -1.3650 10 6 5.6557 3.4909 -2.2537 11 6 7.5275 2.2352 -1.3691 12 6 7.9788 1.7790 -2.7327 13 1 7.2535 1.6244 -3.5178 14 6 9.3177 1.5600 -2.9782 15 7 10.2011 1.7497 -2.0225 16 14 9.8772 0.9952 -4.6686 17 1 8.6974 0.8574 -5.5600 18 1 10.8151 1.9951 -5.2392 19 1 10.5634 -0.3163 -4.5504 20 6 3.4359 1.2864 -0.0068 21 8 4.1795 0.1477 -0.0125 22 6 4.5346 -0.4017 1.2581 23 6 5.3644 -1.6703 1.0512 24 6 4.7732 -2.9904 1.5500 25 6 5.9436 -2.3463 2.2956 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8900 29 1 0.2146 2.3197 0.0005 30 1 1.3342 4.5115 0.0000 31 1 3.7908 4.6434 -0.0005 32 1 5.9718 1.8421 0.6593 33 1 5.8735 3.5924 0.3510 34 1 6.0534 4.4334 -1.8774 35 1 6.0405 3.3085 -3.2571 36 1 4.5675 3.5429 -2.2862 37 1 7.9987 3.1887 -1.1307 38 1 7.8133 1.4923 -0.6244 39 1 11.1430 1.5952 -2.1953 40 1 5.1198 0.3275 1.8184 41 1 3.6294 -0.6457 1.8141 42 1 5.9611 -1.6983 0.1394 43 1 3.7927 -2.9550 2.0251 44 1 4.9805 -3.8871 0.9662 45 1 6.9212 -2.8194 2.2023 46 1 5.7335 -1.8872 3.2616 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250521077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:21:30 Heat of formation + Delta-G solvation = -14.585212 kcal Electronic energy + Delta-G solvation = -25703.325424 eV Core-core repulsion = 22173.999382 eV Total energy + Delta-G solvation = -3529.326042 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.44163 -38.36047 -37.58186 -36.26500 -35.91065 -32.58955 -30.82382 -29.93109 -27.46965 -27.29696 -26.95204 -26.07395 -23.72013 -22.33773 -22.10461 -21.24477 -20.52693 -20.05209 -17.92980 -17.18246 -16.62769 -16.21502 -15.99716 -15.56872 -14.94555 -14.77513 -14.59232 -14.23861 -14.18635 -13.89856 -13.71824 -13.30039 -13.24511 -12.72792 -12.21405 -12.04317 -11.87649 -11.61806 -11.49057 -11.45390 -11.20103 -11.14959 -10.97756 -10.82392 -10.69510 -10.54600 -10.38371 -10.34035 -10.18574 -9.77125 -9.36047 -9.13457 -8.50846 -8.36079 -7.99181 -7.11711 -5.96101 -3.96089 1.32247 1.48480 3.24574 3.35750 3.42940 3.48972 3.54355 3.88066 4.09166 4.49875 4.81033 4.86441 4.95396 5.00797 5.02168 5.04969 5.11409 5.25771 5.31760 5.38188 5.40099 5.45935 5.49285 5.53641 5.64224 5.69640 5.80000 5.81291 5.95750 5.96746 6.17775 6.19515 6.27217 6.33881 6.40846 6.45113 6.49175 6.69188 6.78802 6.85803 7.28053 7.36720 7.40423 7.88153 7.97571 8.16501 8.29133 8.63060 9.11988 9.67543 11.14942 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011540 B = 0.004649 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2425.757256 B = 6020.817353 C = 7473.842335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.306 6.306 3 C 0.103 3.897 4 C -0.207 4.207 5 C -0.090 4.090 6 C -0.140 4.140 7 C -0.045 4.045 8 C 0.096 3.904 9 N -0.524 5.524 10 C 0.037 3.963 11 C 0.195 3.805 12 C -0.500 4.500 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.284 1.284 20 C 0.092 3.908 21 O -0.300 6.300 22 C 0.102 3.898 23 C -0.146 4.146 24 C -0.178 4.178 25 C -0.174 4.174 26 H 0.097 0.903 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.124 0.876 32 H 0.077 0.923 33 H 0.032 0.968 34 H 0.009 0.991 35 H 0.073 0.927 36 H 0.045 0.955 37 H -0.011 1.011 38 H 0.030 0.970 39 H 0.259 0.741 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.122 0.878 43 H 0.091 0.909 44 H 0.094 0.906 45 H 0.098 0.902 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.407 -1.576 9.320 20.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.219 6.219 3 C 0.057 3.943 4 C -0.226 4.226 5 C -0.108 4.108 6 C -0.159 4.159 7 C -0.047 4.047 8 C -0.032 4.032 9 N -0.248 5.248 10 C -0.112 4.112 11 C 0.070 3.930 12 C -0.539 4.539 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.724 3.276 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.211 1.211 20 C 0.046 3.954 21 O -0.217 6.217 22 C 0.028 3.972 23 C -0.164 4.164 24 C -0.215 4.215 25 C -0.211 4.211 26 H 0.115 0.885 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.142 0.858 32 H 0.095 0.905 33 H 0.050 0.950 34 H 0.027 0.973 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.007 0.993 38 H 0.048 0.952 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.065 0.935 42 H 0.140 0.860 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.117 0.883 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.247 -2.334 9.018 20.487 hybrid contribution 0.411 0.727 -0.435 0.942 sum -17.836 -1.607 8.583 19.859 Atomic orbital electron populations 1.23030 0.79135 1.03653 1.01019 1.86189 1.20624 1.26393 1.88709 1.19481 0.91691 0.84708 0.98398 1.21035 0.99602 0.92029 1.09936 1.20851 0.94441 0.96780 0.98746 1.20924 0.93485 0.97833 1.03670 1.20200 0.96920 0.91310 0.96225 1.20922 0.88803 0.99698 0.93761 1.62105 1.16134 1.41775 1.04829 1.22245 0.98588 0.91384 0.98956 1.19734 0.79633 0.95493 0.98140 1.21204 0.91903 1.44062 0.96740 0.91798 1.24967 0.96686 0.95865 0.97094 1.69974 1.01697 1.50052 1.32325 0.86470 0.78598 0.78215 0.84328 1.19651 1.21212 1.21058 1.17719 0.85733 0.86661 1.05257 1.86215 1.69991 1.37725 1.27736 1.22125 0.96696 0.93520 0.84901 1.22114 1.02507 0.91895 0.99875 1.23029 0.97631 0.96903 1.03948 1.22948 0.98393 1.03930 0.95812 0.88469 0.93023 0.92784 0.85555 0.85869 0.85755 0.90458 0.94996 0.97292 0.90778 0.93583 0.99299 0.95179 0.93110 0.92924 0.93483 0.85982 0.89034 0.88753 0.88315 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.24 16 2 O -0.31 -4.37 10.28 -34.23 -0.35 -4.72 16 3 C 0.10 1.56 6.70 -39.12 -0.26 1.30 16 4 C -0.21 -2.58 9.04 -39.46 -0.36 -2.94 16 5 C -0.09 -1.09 10.04 -39.57 -0.40 -1.49 16 6 C -0.14 -1.99 8.72 -39.58 -0.35 -2.33 16 7 C -0.05 -0.77 4.58 -104.50 -0.48 -1.25 16 8 C 0.10 1.84 4.75 -4.97 -0.02 1.82 16 9 N -0.52 -11.94 4.74 -245.82 -1.17 -13.11 16 10 C 0.04 0.76 9.09 60.06 0.55 1.31 16 11 C 0.19 5.22 4.72 -4.97 -0.02 5.20 16 12 C -0.50 -14.45 8.46 -34.44 -0.29 -14.74 16 13 H 0.06 1.85 7.12 -52.49 -0.37 1.48 16 14 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 15 N -0.90 -27.12 13.29 55.43 0.74 -26.38 16 16 Si 0.90 22.16 29.54 -169.99 -5.02 17.14 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.09 1.60 5.71 -39.12 -0.22 1.37 16 21 O -0.30 -5.66 9.17 -34.24 -0.31 -5.97 16 22 C 0.10 1.58 6.06 37.15 0.23 1.81 16 23 C -0.15 -2.16 6.06 -90.62 -0.55 -2.71 16 24 C -0.18 -2.15 10.18 -26.73 -0.27 -2.42 16 25 C -0.17 -2.10 10.25 -26.73 -0.27 -2.37 16 26 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.05 0.38 7.66 -51.92 -0.40 -0.01 16 28 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 29 H 0.13 1.21 6.30 -52.49 -0.33 0.88 16 30 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 31 H 0.12 1.58 8.04 -52.49 -0.42 1.16 16 32 H 0.08 1.51 6.36 -51.93 -0.33 1.18 16 33 H 0.03 0.58 7.98 -51.93 -0.41 0.17 16 34 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16 36 H 0.05 0.86 6.65 -51.93 -0.35 0.51 16 37 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 38 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.05 0.80 7.12 -51.93 -0.37 0.43 16 41 H 0.05 0.67 7.88 -51.93 -0.41 0.26 16 42 H 0.12 2.09 8.14 -51.93 -0.42 1.67 16 43 H 0.09 1.01 8.03 -51.93 -0.42 0.59 16 44 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -32.67 376.80 -9.76 -42.42 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -7.49 Total: -0.34 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -1.83 Total: -14.72 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: -0.43 Total: -39.49 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.67 Total: -10.69 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.67 -9.76 -42.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250521077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.838 kcal (2) G-P(sol) polarization free energy of solvation -32.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds