Wall clock time and date at job start Tue Mar 31 2020 10:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99805 * 2 1 4 4 C 1.38752 * 120.05621 * 0.21515 * 3 2 1 5 5 C 1.38125 * 119.94586 * 180.23040 * 4 3 2 6 6 C 1.38284 * 120.05015 * 359.80860 * 5 4 3 7 7 C 1.38246 * 120.11430 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.97154 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47172 * 204.97510 * 8 7 6 10 10 O 1.42900 * 109.46962 * 324.97924 * 8 7 6 11 11 C 1.53005 * 109.47181 * 84.97637 * 8 7 6 12 12 N 1.46899 * 109.47171 * 179.97438 * 11 8 7 13 13 C 1.46895 * 111.00167 * 179.97438 * 12 11 8 14 14 H 1.09006 * 109.40967 * 35.14474 * 13 12 11 15 15 C 1.52958 * 109.41302 * 155.00082 * 13 12 11 16 16 C 1.53234 * 109.40475 * 183.70905 * 15 13 12 17 17 C 1.51275 * 108.53653 * 305.37485 * 16 15 13 18 18 C 1.37875 * 120.85150 * 231.32696 * 17 16 15 19 19 N 1.31506 * 120.00276 * 164.56347 * 18 17 16 20 20 Si 1.86810 * 119.99802 * 344.56349 * 18 17 16 21 21 H 1.48497 * 109.46866 * 354.64108 * 20 18 17 22 22 H 1.48495 * 109.47019 * 114.63730 * 20 18 17 23 23 H 1.48493 * 109.46911 * 234.63978 * 20 18 17 24 24 C 1.51268 * 118.29921 * 51.34454 * 17 16 15 25 25 C 1.52962 * 109.41739 * 275.35998 * 13 12 11 26 26 C 1.38162 * 120.05756 * 359.97438 * 7 6 5 27 27 H 1.08997 * 109.47429 * 59.99994 * 1 2 3 28 28 H 1.08999 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 299.99955 * 1 2 3 30 30 H 1.08003 * 120.03051 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.97350 * 179.78521 * 5 4 3 32 32 H 1.08008 * 119.94348 * 179.97438 * 6 5 4 33 33 H 0.96702 * 114.00326 * 60.00001 * 10 8 7 34 34 H 1.08999 * 109.46963 * 300.00000 * 11 8 7 35 35 H 1.08997 * 109.47097 * 59.99880 * 11 8 7 36 36 H 1.00906 * 110.99597 * 56.05167 * 12 11 8 37 37 H 1.09002 * 109.48646 * 303.68666 * 15 13 12 38 38 H 1.08994 * 109.48262 * 63.71402 * 15 13 12 39 39 H 1.08995 * 109.62628 * 65.08565 * 16 15 13 40 40 H 1.08994 * 109.62817 * 185.65889 * 16 15 13 41 41 H 0.97001 * 120.00483 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.62651 * 68.37142 * 24 17 16 43 43 H 1.08998 * 109.62554 * 188.74863 * 24 17 16 44 44 H 1.09004 * 109.47614 * 296.27057 * 25 13 12 45 45 H 1.08997 * 109.48598 * 56.31053 * 25 13 12 46 46 H 1.08000 * 120.02818 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0045 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6758 -0.0056 7 6 4.0559 2.5171 -0.0056 8 6 5.5607 2.5983 -0.0108 9 1 5.9722 1.6866 -0.4441 10 8 5.9743 3.7239 -0.7879 11 6 6.0680 2.7550 1.4241 12 7 7.5349 2.8334 1.4191 13 6 8.0587 2.9853 2.7831 14 1 7.4353 2.4195 3.4756 15 6 9.4921 2.4545 2.8393 16 6 10.0058 2.5273 4.2811 17 6 9.8472 3.9476 4.7770 18 6 10.9064 4.6190 5.3498 19 7 10.8551 5.9248 5.4970 20 14 12.4146 3.6736 5.9169 21 1 12.1732 2.2168 5.7607 22 1 13.5861 4.0720 5.0959 23 1 12.6832 3.9807 7.3447 24 6 8.4965 4.6123 4.6286 25 6 8.0375 4.4639 3.1743 26 6 3.4311 1.2849 0.0003 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3204 0.0084 31 1 1.3339 4.5114 -0.0003 32 1 3.7921 4.6382 -0.0098 33 1 5.6440 4.5714 -0.4594 34 1 5.6565 3.6666 1.8574 35 1 5.7525 1.8964 2.0169 36 1 7.8548 3.5827 0.8238 37 1 9.5100 1.4191 2.4989 38 1 10.1295 3.0600 2.1950 39 1 9.4258 1.8528 4.9109 40 1 11.0582 2.2450 4.3095 41 1 11.6005 6.3972 5.8997 42 1 7.7767 4.1308 5.2907 43 1 8.5784 5.6689 4.8836 44 1 8.7094 5.0220 2.5222 45 1 7.0244 4.8528 3.0712 46 1 4.0207 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250732926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:52 Heat of formation + Delta-G solvation = -77.500009 kcal Electronic energy + Delta-G solvation = -24762.849594 eV Core-core repulsion = 21230.795362 eV Total energy + Delta-G solvation = -3532.054232 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.50987 -38.81401 -37.49503 -36.41064 -33.91545 -32.11565 -31.35704 -30.46578 -29.49224 -28.24996 -27.54229 -25.81476 -22.96254 -22.84046 -21.55470 -21.18543 -21.02036 -19.28966 -18.42229 -16.70574 -16.67608 -16.24757 -16.03768 -16.01563 -15.29691 -15.06321 -14.40642 -14.18364 -13.88854 -13.76093 -13.52404 -13.09600 -13.01454 -12.79049 -12.56790 -12.40497 -12.00621 -11.96664 -11.73382 -11.61374 -11.39636 -11.31910 -10.97902 -10.86340 -10.82080 -10.68048 -10.16831 -9.92685 -9.85410 -9.44900 -9.07236 -8.91310 -8.81751 -8.45841 -8.32245 -7.74287 -6.10169 -3.94435 1.03038 1.20086 2.94891 3.28618 3.38960 3.42850 3.46609 4.25173 4.40133 4.42323 4.50559 4.72352 4.75101 4.78871 4.86933 5.05060 5.09665 5.13026 5.14767 5.20540 5.30590 5.38534 5.71996 5.72820 5.89797 5.91002 6.01761 6.06665 6.16814 6.29839 6.34603 6.48653 6.60571 6.72179 6.84119 6.85066 7.05186 7.09578 7.10668 7.21251 7.49201 7.51082 7.63373 7.71407 7.73108 7.82084 7.98105 8.43546 9.00462 9.58454 10.99849 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.002589 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.335074 B =10812.321016 C =11020.377240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.211 4.211 5 C -0.077 4.077 6 C -0.148 4.148 7 C -0.070 4.070 8 C 0.149 3.851 9 H 0.117 0.883 10 O -0.550 6.550 11 C 0.035 3.965 12 N -0.686 5.686 13 C 0.099 3.901 14 H 0.062 0.938 15 C -0.090 4.090 16 C -0.016 4.016 17 C -0.490 4.490 18 C 0.077 3.923 19 N -0.886 5.886 20 Si 0.880 3.120 21 H -0.261 1.261 22 H -0.283 1.283 23 H -0.287 1.287 24 C 0.013 3.987 25 C -0.132 4.132 26 C -0.141 4.141 27 H 0.054 0.946 28 H 0.099 0.901 29 H 0.055 0.945 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.123 0.877 33 H 0.371 0.629 34 H 0.032 0.968 35 H 0.078 0.922 36 H 0.342 0.658 37 H 0.038 0.962 38 H 0.050 0.950 39 H 0.012 0.988 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.000 1.000 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.770 -6.799 -11.913 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.230 4.230 5 C -0.095 4.095 6 C -0.167 4.167 7 C -0.071 4.071 8 C 0.090 3.910 9 H 0.134 0.866 10 O -0.355 6.355 11 C -0.095 4.095 12 N -0.317 5.317 13 C -0.010 4.010 14 H 0.080 0.920 15 C -0.129 4.129 16 C -0.054 4.054 17 C -0.509 4.509 18 C -0.125 4.125 19 N -0.523 5.523 20 Si 0.707 3.293 21 H -0.185 1.185 22 H -0.210 1.210 23 H -0.213 1.213 24 C -0.025 4.025 25 C -0.171 4.171 26 C -0.159 4.159 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.074 0.926 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.219 0.781 34 H 0.050 0.950 35 H 0.096 0.904 36 H 0.161 0.839 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.030 0.970 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.018 0.982 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.041 0.959 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -19.209 -7.986 -12.209 24.121 hybrid contribution -0.118 1.168 0.944 1.507 sum -19.327 -6.818 -11.265 23.387 Atomic orbital electron populations 1.23053 0.78413 1.03956 1.01320 1.86083 1.21362 1.26933 1.88728 1.18986 0.92248 0.84166 0.96373 1.21228 0.99959 0.92454 1.09359 1.20889 0.94433 0.97032 0.97152 1.20809 0.93860 0.98000 1.03998 1.20415 0.96851 0.92718 0.97161 1.20947 0.87319 0.90866 0.91915 0.86561 1.86653 1.76467 1.16809 1.55600 1.22553 0.90451 1.01227 0.95260 1.60705 1.06398 1.52101 1.12500 1.21489 0.96632 0.96047 0.86798 0.91967 1.21484 0.94279 0.97945 0.99195 1.19779 0.96547 0.96848 0.92269 1.20017 0.95785 0.96423 1.38686 1.24827 0.97834 0.94420 0.95452 1.69916 1.32272 1.06779 1.43315 0.86765 0.82865 0.81262 0.78390 1.18548 1.20969 1.21294 1.19325 0.94355 0.98969 0.89873 1.22229 0.97338 0.95481 1.02081 1.20241 0.91368 0.98231 1.06095 0.92698 0.88217 0.92623 0.85569 0.85662 0.85935 0.78124 0.94968 0.90380 0.83934 0.94341 0.93167 0.96966 0.94924 0.92753 0.98207 0.92825 0.92952 0.95939 0.84865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 9.81 101.05 0.99 1.16 16 2 O -0.32 -3.26 10.50 -19.44 -0.20 -3.46 16 3 C 0.13 1.39 6.69 -39.22 -0.26 1.12 16 4 C -0.21 -1.98 9.04 -39.43 -0.36 -2.34 16 5 C -0.08 -0.71 10.04 -39.61 -0.40 -1.11 16 6 C -0.15 -1.50 9.32 -39.56 -0.37 -1.87 16 7 C -0.07 -0.79 5.00 -104.65 -0.52 -1.31 16 8 C 0.15 1.78 3.48 -27.88 -0.10 1.68 16 9 H 0.12 1.43 8.05 -51.93 -0.42 1.01 16 10 O -0.55 -6.66 12.47 -35.23 -0.44 -7.10 16 11 C 0.04 0.48 5.17 -3.82 -0.02 0.46 16 12 N -0.69 -11.20 6.24 -106.77 -0.67 -11.87 16 13 C 0.10 1.92 2.36 -67.76 -0.16 1.76 16 14 H 0.06 1.25 7.80 -51.93 -0.40 0.84 16 15 C -0.09 -1.90 5.54 -26.63 -0.15 -2.05 16 16 C -0.02 -0.39 5.47 -27.48 -0.15 -0.54 16 17 C -0.49 -13.03 5.44 -98.92 -0.54 -13.56 16 18 C 0.08 2.14 5.43 -17.82 -0.10 2.04 16 19 N -0.89 -25.63 12.81 55.43 0.71 -24.92 16 20 Si 0.88 21.14 27.63 -169.99 -4.70 16.44 16 21 H -0.26 -6.07 6.14 56.52 0.35 -5.72 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 24 C 0.01 0.32 5.99 -27.49 -0.16 0.16 16 25 C -0.13 -2.80 5.20 -26.63 -0.14 -2.94 16 26 C -0.14 -1.60 9.62 -39.44 -0.38 -1.98 16 27 H 0.05 0.27 7.67 -51.93 -0.40 -0.12 16 28 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.06 0.29 7.65 -51.93 -0.40 -0.11 16 30 H 0.13 0.89 6.30 -52.48 -0.33 0.55 16 31 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 32 H 0.12 1.03 6.61 -52.48 -0.35 0.68 16 33 H 0.37 3.42 7.39 45.56 0.34 3.76 16 34 H 0.03 0.45 7.35 -51.93 -0.38 0.07 16 35 H 0.08 1.10 8.05 -51.93 -0.42 0.68 16 36 H 0.34 5.58 7.87 -39.29 -0.31 5.27 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 40 H 0.03 0.77 5.02 -51.93 -0.26 0.51 16 41 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.00 -0.01 8.14 -51.93 -0.42 -0.43 16 43 H 0.05 1.47 7.11 -51.93 -0.37 1.10 16 44 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.02 0.43 7.35 -51.93 -0.38 0.05 16 46 H 0.13 1.42 8.06 -52.49 -0.42 0.99 16 LS Contribution 361.11 15.07 5.44 5.44 Total: -1.00 -30.33 361.11 -9.32 -39.64 By element: Atomic # 1 Polarization: 11.80 SS G_CDS: -6.65 Total: 5.14 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -2.81 Total: -19.32 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 0.04 Total: -36.79 kcal Atomic # 8 Polarization: -9.92 SS G_CDS: -0.64 Total: -10.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -4.70 Total: 16.44 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.33 -9.32 -39.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250732926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.858 kcal (2) G-P(sol) polarization free energy of solvation -30.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds