Wall clock time and date at job start Tue Mar 31 2020 10:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35905 * 116.99805 * 2 1 4 4 C 1.38752 * 120.05621 * 0.21515 * 3 2 1 5 5 C 1.38125 * 119.94586 * 180.23040 * 4 3 2 6 6 C 1.38284 * 120.05015 * 359.80860 * 5 4 3 7 7 C 1.38246 * 120.11430 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.97154 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47172 * 204.97510 * 8 7 6 10 10 O 1.42900 * 109.46962 * 324.97924 * 8 7 6 11 11 C 1.53005 * 109.47181 * 84.97637 * 8 7 6 12 12 N 1.46899 * 109.47171 * 179.97438 * 11 8 7 13 13 C 1.46895 * 111.00167 * 179.97438 * 12 11 8 14 14 H 1.09006 * 109.40967 * 35.14474 * 13 12 11 15 15 C 1.52958 * 109.41302 * 155.00082 * 13 12 11 16 16 C 1.53234 * 109.40475 * 183.70905 * 15 13 12 17 17 C 1.51275 * 108.53653 * 305.37485 * 16 15 13 18 18 C 1.37875 * 120.85150 * 231.32696 * 17 16 15 19 19 N 1.31506 * 120.00276 * 164.56347 * 18 17 16 20 20 Si 1.86810 * 119.99802 * 344.56349 * 18 17 16 21 21 H 1.48497 * 109.46866 * 354.64108 * 20 18 17 22 22 H 1.48495 * 109.47019 * 114.63730 * 20 18 17 23 23 H 1.48493 * 109.46911 * 234.63978 * 20 18 17 24 24 C 1.51268 * 118.29921 * 51.34454 * 17 16 15 25 25 C 1.52962 * 109.41739 * 275.35998 * 13 12 11 26 26 C 1.38162 * 120.05756 * 359.97438 * 7 6 5 27 27 H 1.08997 * 109.47429 * 59.99994 * 1 2 3 28 28 H 1.08999 * 109.46782 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47026 * 299.99955 * 1 2 3 30 30 H 1.08003 * 120.03051 * 0.02562 * 4 3 2 31 31 H 1.07995 * 119.97350 * 179.78521 * 5 4 3 32 32 H 1.08008 * 119.94348 * 179.97438 * 6 5 4 33 33 H 0.96702 * 114.00326 * 60.00001 * 10 8 7 34 34 H 1.08999 * 109.46963 * 300.00000 * 11 8 7 35 35 H 1.08997 * 109.47097 * 59.99880 * 11 8 7 36 36 H 1.00906 * 110.99597 * 56.05167 * 12 11 8 37 37 H 1.09002 * 109.48646 * 303.68666 * 15 13 12 38 38 H 1.08994 * 109.48262 * 63.71402 * 15 13 12 39 39 H 1.08995 * 109.62628 * 65.08565 * 16 15 13 40 40 H 1.08994 * 109.62817 * 185.65889 * 16 15 13 41 41 H 0.97001 * 120.00483 * 180.02562 * 19 18 17 42 42 H 1.09004 * 109.62651 * 68.37142 * 24 17 16 43 43 H 1.08998 * 109.62554 * 188.74863 * 24 17 16 44 44 H 1.09004 * 109.47614 * 296.27057 * 25 13 12 45 45 H 1.08997 * 109.48598 * 56.31053 * 25 13 12 46 46 H 1.08000 * 120.02818 * 180.02562 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0045 5 6 1.9208 3.6048 -0.0003 6 6 3.3018 3.6758 -0.0056 7 6 4.0559 2.5171 -0.0056 8 6 5.5607 2.5983 -0.0108 9 1 5.9722 1.6866 -0.4441 10 8 5.9743 3.7239 -0.7879 11 6 6.0680 2.7550 1.4241 12 7 7.5349 2.8334 1.4191 13 6 8.0587 2.9853 2.7831 14 1 7.4353 2.4195 3.4756 15 6 9.4921 2.4545 2.8393 16 6 10.0058 2.5273 4.2811 17 6 9.8472 3.9476 4.7770 18 6 10.9064 4.6190 5.3498 19 7 10.8551 5.9248 5.4970 20 14 12.4146 3.6736 5.9169 21 1 12.1732 2.2168 5.7607 22 1 13.5861 4.0720 5.0959 23 1 12.6832 3.9807 7.3447 24 6 8.4965 4.6123 4.6286 25 6 8.0375 4.4639 3.1743 26 6 3.4311 1.2849 0.0003 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 0.2128 2.3204 0.0084 31 1 1.3339 4.5114 -0.0003 32 1 3.7921 4.6382 -0.0098 33 1 5.6440 4.5714 -0.4594 34 1 5.6565 3.6666 1.8574 35 1 5.7525 1.8964 2.0169 36 1 7.8548 3.5827 0.8238 37 1 9.5100 1.4191 2.4989 38 1 10.1295 3.0600 2.1950 39 1 9.4258 1.8528 4.9109 40 1 11.0582 2.2450 4.3095 41 1 11.6005 6.3972 5.8997 42 1 7.7767 4.1308 5.2907 43 1 8.5784 5.6689 4.8836 44 1 8.7094 5.0220 2.5222 45 1 7.0244 4.8528 3.0712 46 1 4.0207 0.3800 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250732926.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:50 Heat of formation + Delta-G solvation = -97.915064 kcal Electronic energy + Delta-G solvation = -24763.734858 eV Core-core repulsion = 21230.795362 eV Total energy + Delta-G solvation = -3532.939495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.24836 -39.80658 -38.87578 -37.37319 -35.52215 -33.53151 -32.57039 -31.35178 -31.20690 -29.60354 -28.21669 -27.15070 -24.12886 -23.60270 -23.39196 -22.86462 -21.88976 -20.99388 -19.18093 -18.22934 -17.42570 -17.37461 -16.93410 -16.64799 -16.40886 -16.31092 -16.22299 -15.41385 -15.06669 -14.89736 -14.59087 -14.48379 -14.38755 -14.06470 -13.77654 -13.70901 -13.23044 -13.20701 -13.06779 -12.72034 -12.66859 -12.55370 -12.50489 -12.37187 -11.97547 -11.76527 -11.74661 -11.65232 -11.38012 -11.13926 -10.76525 -10.71234 -10.36602 -9.84191 -9.20377 -9.17124 -8.18684 -6.06106 0.26869 0.45200 1.37519 1.43117 1.53199 2.33683 2.42718 2.69214 3.05294 3.22610 3.53219 3.83643 3.84920 4.04625 4.08958 4.12258 4.18491 4.29771 4.34745 4.36775 4.38882 4.50029 4.57644 4.62746 4.72817 4.74414 4.78476 4.95865 4.99358 5.01440 5.08369 5.13443 5.22540 5.29211 5.35061 5.38725 5.44445 5.57143 5.61708 5.65231 5.76269 5.76702 5.87766 6.20220 6.37387 6.43601 6.57183 6.73766 6.97352 7.48842 8.92834 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.002589 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.335074 B =10812.321016 C =11020.377240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.079 4.079 6 C -0.158 4.158 7 C -0.080 4.080 8 C 0.162 3.838 9 H 0.110 0.890 10 O -0.561 6.561 11 C 0.039 3.961 12 N -0.682 5.682 13 C 0.111 3.889 14 H 0.060 0.940 15 C -0.086 4.086 16 C -0.019 4.019 17 C -0.502 4.502 18 C 0.022 3.978 19 N -0.927 5.927 20 Si 0.934 3.066 21 H -0.246 1.246 22 H -0.283 1.283 23 H -0.288 1.288 24 C 0.008 3.992 25 C -0.119 4.119 26 C -0.160 4.160 27 H 0.066 0.934 28 H 0.117 0.883 29 H 0.064 0.936 30 H 0.150 0.850 31 H 0.151 0.849 32 H 0.138 0.862 33 H 0.383 0.617 34 H 0.034 0.966 35 H 0.076 0.924 36 H 0.344 0.656 37 H 0.057 0.943 38 H 0.040 0.960 39 H 0.017 0.983 40 H 0.032 0.968 41 H 0.262 0.738 42 H -0.001 1.001 43 H 0.020 0.980 44 H 0.037 0.963 45 H 0.041 0.959 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.276 -7.813 -12.897 26.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.069 3.931 4 C -0.230 4.230 5 C -0.097 4.097 6 C -0.176 4.176 7 C -0.081 4.081 8 C 0.103 3.897 9 H 0.128 0.872 10 O -0.368 6.368 11 C -0.091 4.091 12 N -0.312 5.312 13 C 0.001 3.999 14 H 0.078 0.922 15 C -0.124 4.124 16 C -0.057 4.057 17 C -0.521 4.521 18 C -0.176 4.176 19 N -0.567 5.567 20 Si 0.760 3.240 21 H -0.169 1.169 22 H -0.209 1.209 23 H -0.214 1.214 24 C -0.030 4.030 25 C -0.158 4.158 26 C -0.179 4.179 27 H 0.085 0.915 28 H 0.135 0.865 29 H 0.083 0.917 30 H 0.168 0.832 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.233 0.767 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.163 0.837 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.035 0.965 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.017 0.983 43 H 0.039 0.961 44 H 0.056 0.944 45 H 0.060 0.940 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -20.735 -9.016 -13.205 26.184 hybrid contribution 0.203 1.489 1.235 1.945 sum -20.533 -7.527 -11.970 24.930 Atomic orbital electron populations 1.23340 0.76400 1.05547 1.02282 1.86054 1.23540 1.26941 1.88719 1.19158 0.92323 0.84989 0.96639 1.21545 1.01211 0.91992 1.08239 1.21245 0.94348 0.98032 0.96107 1.21084 0.94525 0.98258 1.03736 1.20325 0.96249 0.93199 0.98333 1.20701 0.87954 0.90678 0.90415 0.87193 1.86626 1.76775 1.17558 1.55815 1.22580 0.88600 1.01182 0.96719 1.60623 1.08170 1.52010 1.10392 1.21235 0.95955 0.94208 0.88481 0.92160 1.21388 0.94916 0.99054 0.97087 1.19812 0.96876 0.95019 0.93976 1.20619 0.96032 0.97844 1.37578 1.25606 1.00893 0.95105 0.96013 1.70039 1.33289 1.08269 1.45066 0.85888 0.79647 0.80837 0.77651 1.16949 1.20882 1.21423 1.19311 0.94408 0.96795 0.92492 1.22055 0.97843 0.97068 0.98884 1.20367 0.92106 0.98363 1.07061 0.91547 0.86489 0.91737 0.83245 0.83103 0.84424 0.76694 0.94780 0.90576 0.83701 0.92403 0.94133 0.96476 0.94919 0.92906 0.98307 0.96099 0.94417 0.93995 0.85152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.58 10.50 -92.48 -0.97 -7.55 16 3 C 0.11 2.35 6.69 22.51 0.15 2.50 16 4 C -0.21 -3.49 9.04 22.37 0.20 -3.29 16 5 C -0.08 -1.26 10.04 22.25 0.22 -1.04 16 6 C -0.16 -2.88 9.32 22.28 0.21 -2.67 16 7 C -0.08 -1.70 5.00 -19.88 -0.10 -1.80 16 8 C 0.16 3.65 3.48 29.85 0.10 3.76 16 9 H 0.11 2.61 8.05 -2.39 -0.02 2.59 16 10 O -0.56 -12.64 12.47 -148.98 -1.86 -14.50 16 11 C 0.04 1.01 5.17 86.30 0.45 1.45 16 12 N -0.68 -21.06 6.24 -491.71 -3.07 -24.13 16 13 C 0.11 4.13 2.36 44.89 0.11 4.24 16 14 H 0.06 2.31 7.80 -2.38 -0.02 2.29 16 15 C -0.09 -3.47 5.54 30.66 0.17 -3.30 16 16 C -0.02 -0.86 5.47 30.11 0.16 -0.70 16 17 C -0.50 -26.71 5.44 -16.17 -0.09 -26.80 16 18 C 0.02 1.24 5.43 84.66 0.46 1.70 16 19 N -0.93 -55.05 12.81 21.45 0.27 -54.77 16 20 Si 0.93 43.50 27.63 68.60 1.90 45.39 16 21 H -0.25 -10.73 6.14 99.48 0.61 -10.12 16 22 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 23 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 24 C 0.01 0.41 5.99 30.10 0.18 0.59 16 25 C -0.12 -4.98 5.20 30.66 0.16 -4.83 16 26 C -0.16 -3.55 9.62 22.36 0.22 -3.34 16 27 H 0.07 0.51 7.67 -2.39 -0.02 0.49 16 28 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.53 7.65 -2.39 -0.02 0.52 16 30 H 0.15 1.65 6.30 -2.91 -0.02 1.63 16 31 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.14 1.97 6.61 -2.91 -0.02 1.96 16 33 H 0.38 6.32 7.39 -74.06 -0.55 5.77 16 34 H 0.03 0.88 7.35 -2.39 -0.02 0.87 16 35 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 36 H 0.34 10.63 7.87 -89.69 -0.71 9.92 16 37 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 38 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.03 1.48 5.02 -2.39 -0.01 1.47 16 41 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 42 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 43 H 0.02 1.16 7.11 -2.39 -0.02 1.15 16 44 H 0.04 1.67 8.14 -2.38 -0.02 1.65 16 45 H 0.04 1.57 7.35 -2.39 -0.02 1.55 16 46 H 0.13 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -65.18 361.11 -0.37 -65.56 By element: Atomic # 1 Polarization: 22.58 SS G_CDS: -0.36 Total: 22.22 kcal Atomic # 6 Polarization: -35.93 SS G_CDS: 3.71 Total: -32.22 kcal Atomic # 7 Polarization: -76.10 SS G_CDS: -2.80 Total: -78.90 kcal Atomic # 8 Polarization: -19.22 SS G_CDS: -2.83 Total: -22.05 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 1.90 Total: 45.39 kcal Total: -65.18 -0.37 -65.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250732926.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.360 kcal (2) G-P(sol) polarization free energy of solvation -65.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds