Wall clock time and date at job start Tue Mar 31 2020 10:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35904 * 116.99504 * 2 1 4 4 C 1.38752 * 120.05742 * 0.02562 * 3 2 1 5 5 C 1.38128 * 119.94621 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.04970 * 359.74567 * 5 4 3 7 7 C 1.38245 * 120.11890 * 0.50831 * 6 5 4 8 8 C 1.50692 * 119.97888 * 179.77036 * 7 6 5 9 9 H 1.09004 * 109.47225 * 204.72883 * 8 7 6 10 10 O 1.42909 * 109.46770 * 324.72150 * 8 7 6 11 11 C 1.52993 * 109.47404 * 84.72189 * 8 7 6 12 12 N 1.46902 * 109.47210 * 179.61119 * 11 8 7 13 13 C 1.46907 * 111.00035 * 185.59800 * 12 11 8 14 14 C 1.50699 * 110.01527 * 62.52773 * 13 12 11 15 15 H 1.07999 * 119.99493 * 244.94002 * 14 13 12 16 16 C 1.37874 * 119.99892 * 64.93717 * 14 13 12 17 17 N 1.31515 * 119.99863 * 181.42098 * 16 14 13 18 18 Si 1.86798 * 120.00277 * 1.42312 * 16 14 13 19 19 H 1.48501 * 109.46911 * 84.78728 * 18 16 14 20 20 H 1.48502 * 109.47327 * 204.78681 * 18 16 14 21 21 H 1.48495 * 109.46915 * 324.79061 * 18 16 14 22 22 C 1.54272 * 110.03038 * 301.08590 * 13 12 11 23 23 C 1.54890 * 104.19311 * 217.10451 * 22 13 12 24 24 C 1.54889 * 102.74826 * 37.94178 * 23 22 13 25 25 C 1.53868 * 110.03115 * 183.91863 * 13 12 11 26 26 C 1.38171 * 120.04777 * 359.49275 * 7 6 5 27 27 H 1.09000 * 109.46934 * 60.00285 * 1 2 3 28 28 H 1.08997 * 109.47004 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47833 * 299.99889 * 1 2 3 30 30 H 1.07996 * 120.02922 * 0.02562 * 4 3 2 31 31 H 1.07993 * 119.97474 * 180.02562 * 5 4 3 32 32 H 1.08004 * 119.94303 * 180.27716 * 6 5 4 33 33 H 0.96690 * 113.99676 * 60.00095 * 10 8 7 34 34 H 1.08997 * 109.47439 * 59.60890 * 11 8 7 35 35 H 1.09007 * 109.47223 * 299.60848 * 11 8 7 36 36 H 1.00899 * 111.00226 * 61.64606 * 12 11 8 37 37 H 0.97001 * 120.00010 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.48318 * 335.78130 * 22 13 12 39 39 H 1.09001 * 110.48404 * 98.42613 * 22 13 12 40 40 H 1.09003 * 110.75479 * 279.63371 * 23 22 13 41 41 H 1.08999 * 110.75578 * 156.25599 * 23 22 13 42 42 H 1.09002 * 110.48886 * 203.37964 * 24 23 22 43 43 H 1.09003 * 110.48717 * 80.73710 * 24 23 22 44 44 H 1.08999 * 110.03348 * 238.57209 * 25 13 12 45 45 H 1.09002 * 110.03800 * 359.97438 * 25 13 12 46 46 H 1.08007 * 120.02451 * 180.27747 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2913 2.3753 0.0005 5 6 1.9206 3.6049 0.0011 6 6 3.3017 3.6759 0.0064 7 6 4.0559 2.5173 0.0006 8 6 5.5606 2.5984 0.0011 9 1 5.9737 1.6881 -0.4334 10 8 5.9771 3.7264 -0.7712 11 6 6.0626 2.7511 1.4383 12 7 7.5300 2.8208 1.4396 13 6 8.0552 2.8342 2.8116 14 6 7.6899 1.5531 3.5162 15 1 7.0250 1.5755 4.3670 16 6 8.2045 0.3526 3.0747 17 7 7.8637 -0.7683 3.6722 18 14 9.3856 0.3182 1.6280 19 1 10.7665 0.5750 2.1102 20 1 9.3293 -1.0141 0.9745 21 1 9.0002 1.3664 0.6493 22 6 7.4872 4.0434 3.5830 23 6 8.6652 4.5144 4.4716 24 6 9.8919 4.3134 3.5476 25 6 9.5841 3.0059 2.7890 26 6 3.4310 1.2850 0.0000 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3635 0.5138 0.8899 30 1 0.2127 2.3203 0.0014 31 1 1.3337 4.5114 0.0019 32 1 3.7920 4.6382 0.0113 33 1 5.6456 4.5727 -0.4416 34 1 5.7391 1.8942 2.0292 35 1 5.6551 3.6651 1.8704 36 1 7.8544 3.6228 0.9205 37 1 8.2260 -1.6129 3.3618 38 1 7.1917 4.8324 2.8915 39 1 6.6417 3.7392 4.2001 40 1 8.7480 3.8939 5.3639 41 1 8.5512 5.5648 4.7393 42 1 10.8014 4.2064 4.1387 43 1 9.9848 5.1461 2.8503 44 1 10.0619 2.1631 3.2884 45 1 9.9366 3.0789 1.7601 46 1 4.0206 0.3801 0.0000 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250743488.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:28 Heat of formation + Delta-G solvation = -57.555561 kcal Electronic energy + Delta-G solvation = -25893.241574 eV Core-core repulsion = 22362.052198 eV Total energy + Delta-G solvation = -3531.189376 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.21373 -38.65609 -37.83092 -36.18795 -33.21317 -32.10422 -31.46924 -30.20586 -28.39471 -27.87765 -27.35061 -25.90575 -23.70518 -22.57343 -22.28784 -20.73822 -19.86806 -18.78790 -18.12991 -16.41869 -16.37441 -16.15211 -15.83337 -15.76557 -15.20206 -14.87465 -14.63433 -14.30639 -13.72401 -13.56159 -13.31820 -13.17337 -12.81553 -12.72750 -12.35986 -12.28227 -12.02145 -11.72571 -11.63708 -11.29316 -11.05350 -10.89595 -10.70581 -10.62847 -10.57302 -10.39236 -10.16904 -9.79148 -9.71744 -9.61862 -9.42496 -8.91187 -8.72051 -8.43533 -8.17297 -7.03786 -5.95759 -4.01658 1.33818 1.48746 3.22802 3.51369 3.63528 3.77005 3.89834 4.66011 4.71128 4.73320 4.76759 4.97872 5.01324 5.03138 5.18913 5.31433 5.33040 5.38328 5.45619 5.52502 5.58296 5.64723 5.73875 5.79143 5.86798 6.06178 6.16633 6.29897 6.31270 6.38017 6.43126 6.44682 6.50543 6.60407 6.62318 6.65911 6.68614 6.83369 6.86297 6.92271 7.03763 7.29818 7.39901 7.76844 7.85771 8.10602 8.50356 8.73903 9.05120 9.70848 11.14320 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015540 B = 0.004447 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.408142 B = 6294.198460 C = 7072.858698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.316 6.316 3 C 0.128 3.872 4 C -0.215 4.215 5 C -0.081 4.081 6 C -0.150 4.150 7 C -0.063 4.063 8 C 0.145 3.855 9 H 0.114 0.886 10 O -0.553 6.553 11 C 0.049 3.951 12 N -0.670 5.670 13 C 0.211 3.789 14 C -0.503 4.503 15 H 0.068 0.932 16 C 0.085 3.915 17 N -0.902 5.902 18 Si 0.875 3.125 19 H -0.294 1.294 20 H -0.311 1.311 21 H -0.210 1.210 22 C -0.135 4.135 23 C -0.115 4.115 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.137 4.137 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.054 0.946 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.365 0.635 34 H 0.099 0.901 35 H 0.018 0.982 36 H 0.314 0.686 37 H 0.261 0.739 38 H 0.039 0.961 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.051 0.949 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.304 9.186 -7.248 16.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.230 6.230 3 C 0.083 3.917 4 C -0.234 4.234 5 C -0.099 4.099 6 C -0.169 4.169 7 C -0.064 4.064 8 C 0.085 3.915 9 H 0.132 0.868 10 O -0.358 6.358 11 C -0.080 4.080 12 N -0.300 5.300 13 C 0.122 3.878 14 C -0.541 4.541 15 H 0.086 0.914 16 C -0.118 4.118 17 N -0.539 5.539 18 Si 0.703 3.297 19 H -0.222 1.222 20 H -0.240 1.240 21 H -0.132 1.132 22 C -0.174 4.174 23 C -0.153 4.153 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.155 4.155 27 H 0.071 0.929 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.142 0.858 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.211 0.789 34 H 0.117 0.883 35 H 0.036 0.964 36 H 0.131 0.869 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.091 0.909 45 H 0.069 0.931 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.831 7.655 -7.683 15.328 hybrid contribution -0.282 1.139 0.090 1.177 sum -11.113 8.795 -7.593 16.078 Atomic orbital electron populations 1.23024 0.78706 1.03800 1.01125 1.86106 1.21119 1.27006 1.88731 1.18987 0.92258 0.84076 0.96378 1.21162 0.99718 0.92483 1.09994 1.20820 0.94415 0.96816 0.97838 1.20742 0.93727 0.97851 1.04553 1.20474 0.97167 0.92547 0.96195 1.21096 0.86944 0.90259 0.93160 0.86805 1.86640 1.76353 1.16595 1.56203 1.22313 0.90374 1.01652 0.93700 1.61193 1.06585 1.45515 1.16708 1.19584 0.89857 0.94081 0.84261 1.20730 1.30344 0.88803 1.14271 0.91421 1.24959 0.95864 0.95076 0.95925 1.69954 1.44323 0.98144 1.41465 0.87150 0.79758 0.77473 0.85285 1.22193 1.23991 1.13204 1.22967 0.97894 0.98052 0.98513 1.22335 0.95521 0.98788 0.98657 1.22303 0.97636 0.97774 0.98042 1.22614 0.98339 0.96914 0.98727 1.20326 0.91353 0.98565 1.05302 0.92881 0.88350 0.92716 0.85792 0.85991 0.86233 0.78867 0.88322 0.96413 0.86897 0.92934 0.94220 0.92299 0.91407 0.93530 0.92822 0.93018 0.90898 0.93053 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.37 10.50 -19.44 -0.20 -4.58 16 3 C 0.13 1.85 6.69 -39.22 -0.26 1.59 16 4 C -0.21 -2.62 9.04 -39.43 -0.36 -2.98 16 5 C -0.08 -0.95 10.04 -39.60 -0.40 -1.34 16 6 C -0.15 -1.94 9.32 -39.56 -0.37 -2.30 16 7 C -0.06 -0.95 5.00 -104.65 -0.52 -1.47 16 8 C 0.14 2.36 3.48 -27.89 -0.10 2.27 16 9 H 0.11 2.05 8.05 -51.93 -0.42 1.63 16 10 O -0.55 -8.29 12.60 -35.23 -0.44 -8.73 16 11 C 0.05 0.92 4.77 -3.83 -0.02 0.90 16 12 N -0.67 -13.53 3.30 -100.00 -0.33 -13.87 16 13 C 0.21 4.58 0.39 -131.63 -0.05 4.53 16 14 C -0.50 -13.45 7.26 -34.44 -0.25 -13.70 16 15 H 0.07 2.01 7.74 -52.49 -0.41 1.60 16 16 C 0.09 2.41 5.33 -17.82 -0.09 2.31 16 17 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 18 Si 0.87 22.02 23.63 -169.99 -4.02 18.00 16 19 H -0.29 -7.40 6.84 56.52 0.39 -7.01 16 20 H -0.31 -8.19 7.11 56.52 0.40 -7.79 16 21 H -0.21 -4.98 5.42 56.52 0.31 -4.67 16 22 C -0.13 -2.58 4.84 -25.07 -0.12 -2.70 16 23 C -0.12 -2.02 6.91 -24.74 -0.17 -2.19 16 24 C -0.12 -2.09 6.83 -25.07 -0.17 -2.26 16 25 C -0.13 -2.68 4.08 -25.62 -0.10 -2.78 16 26 C -0.14 -2.17 9.62 -39.43 -0.38 -2.54 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 30 H 0.12 1.18 6.30 -52.49 -0.33 0.85 16 31 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 32 H 0.12 1.27 6.62 -52.48 -0.35 0.92 16 33 H 0.36 4.15 7.39 45.56 0.34 4.49 16 34 H 0.10 2.19 7.02 -51.93 -0.36 1.83 16 35 H 0.02 0.31 7.04 -51.93 -0.37 -0.06 16 36 H 0.31 5.85 8.18 -39.29 -0.32 5.53 16 37 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 38 H 0.04 0.69 7.63 -51.93 -0.40 0.29 16 39 H 0.06 1.20 7.63 -51.93 -0.40 0.81 16 40 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 1.71 5.65 -51.93 -0.29 1.42 16 45 H 0.05 1.04 6.91 -51.93 -0.36 0.69 16 46 H 0.14 2.19 8.06 -52.48 -0.42 1.77 16 LS Contribution 353.37 15.07 5.33 5.33 Total: -1.00 -31.55 353.37 -7.93 -39.48 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -6.66 Total: 12.51 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.38 Total: -21.43 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.44 Total: -40.57 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: -0.65 Total: -13.31 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.02 Total: 18.00 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.55 -7.93 -39.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250743488.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.073 kcal (2) G-P(sol) polarization free energy of solvation -31.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds