Wall clock time and date at job start Tue Mar 31 2020 10:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00028 * 2 1 4 4 C 1.38757 * 120.05610 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05743 * 0.02562 * 5 4 3 7 7 C 1.38234 * 120.10954 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.97308 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47667 * 160.00169 * 8 7 6 10 10 O 1.42900 * 109.47126 * 39.99696 * 8 7 6 11 11 C 1.53001 * 109.46907 * 279.99921 * 8 7 6 12 12 N 1.46899 * 109.47065 * 184.99712 * 11 8 7 13 13 C 1.46904 * 111.00094 * 175.66465 * 12 11 8 14 14 C 1.50708 * 110.01478 * 54.92223 * 13 12 11 15 15 H 1.08000 * 119.99898 * 244.50291 * 14 13 12 16 16 C 1.37881 * 119.99482 * 64.50810 * 14 13 12 17 17 N 1.31503 * 120.00389 * 354.76966 * 16 14 13 18 18 Si 1.86799 * 119.99371 * 174.49523 * 16 14 13 19 19 H 1.48501 * 109.47522 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47302 * 119.99824 * 18 16 14 21 21 H 1.48497 * 109.47193 * 239.99694 * 18 16 14 22 22 C 1.54268 * 110.03390 * 176.31157 * 13 12 11 23 23 C 1.54973 * 104.15527 * 95.75397 * 22 13 12 24 24 C 1.54890 * 102.77476 * 37.89042 * 23 22 13 25 25 C 1.53873 * 110.03083 * 293.53347 * 13 12 11 26 26 C 1.38172 * 120.05769 * 0.23508 * 7 6 5 27 27 H 1.09003 * 109.47325 * 60.00033 * 1 2 3 28 28 H 1.08998 * 109.47464 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47521 * 300.00007 * 1 2 3 30 30 H 1.08000 * 120.02790 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.97519 * 179.97438 * 5 4 3 32 32 H 1.07995 * 119.94226 * 179.97438 * 6 5 4 33 33 H 0.96695 * 114.00199 * 300.00758 * 10 8 7 34 34 H 1.09004 * 109.47151 * 65.00315 * 11 8 7 35 35 H 1.09000 * 109.47390 * 305.00165 * 11 8 7 36 36 H 1.00902 * 111.00183 * 299.61672 * 12 11 8 37 37 H 0.97005 * 119.99881 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.48641 * 214.40332 * 22 13 12 39 39 H 1.08998 * 110.48433 * 337.05239 * 22 13 12 40 40 H 1.08997 * 110.71801 * 279.57338 * 23 22 13 41 41 H 1.09000 * 110.91915 * 156.29615 * 23 22 13 42 42 H 1.09001 * 110.48258 * 203.40156 * 24 23 22 43 43 H 1.09002 * 110.48675 * 80.76204 * 24 23 22 44 44 H 1.08993 * 110.03344 * 359.94868 * 25 13 12 45 45 H 1.09000 * 110.03119 * 121.38346 * 25 13 12 46 46 H 1.08001 * 120.03055 * 179.74224 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0032 8 6 5.5607 2.5982 -0.0055 9 1 5.9761 1.6534 0.3449 10 8 5.9822 3.6542 0.8601 11 6 6.0543 2.8763 -1.4268 12 7 7.5225 2.8367 -1.4519 13 6 8.0302 2.9977 -2.8209 14 6 7.4787 4.2608 -3.4305 15 1 6.8209 4.2054 -4.2852 16 6 7.8142 5.4872 -2.8969 17 7 8.5307 5.5515 -1.7960 18 14 7.2574 7.0572 -3.7421 19 1 6.4762 6.7148 -4.9577 20 1 6.4081 7.8452 -2.8130 21 1 8.4457 7.8599 -4.1278 22 6 9.5721 3.0454 -2.8106 23 6 9.9985 1.5869 -3.1151 24 6 8.9469 1.1333 -4.1578 25 6 7.6327 1.7823 -3.6768 26 6 3.4310 1.2849 -0.0081 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2128 2.3204 0.0005 31 1 1.3339 4.5114 0.0000 32 1 3.7921 4.6381 -0.0024 33 1 5.6491 4.5262 0.6080 34 1 5.7120 3.8614 -1.7441 35 1 5.6587 2.1188 -2.1035 36 1 7.9136 3.5345 -0.8368 37 1 8.7663 6.4143 -1.4205 38 1 9.9381 3.7193 -3.5850 39 1 9.9376 3.3539 -1.8311 40 1 9.9414 0.9729 -2.2164 41 1 11.0020 1.5554 -3.5395 42 1 8.8570 0.0470 -4.1611 43 1 9.2117 1.4981 -5.1503 44 1 7.0639 1.0726 -3.0761 45 1 7.0410 2.1061 -4.5330 46 1 4.0206 0.3800 -0.0136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250743490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:34 Heat of formation + Delta-G solvation = -72.958801 kcal Electronic energy + Delta-G solvation = -25838.903658 eV Core-core repulsion = 22307.046347 eV Total energy + Delta-G solvation = -3531.857311 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.17132 -38.37680 -37.49132 -35.98007 -33.11346 -32.00596 -31.21941 -30.12879 -27.90457 -27.55066 -27.32045 -25.60352 -23.84519 -22.52654 -22.07634 -20.54901 -19.54766 -18.39933 -17.99390 -16.39890 -16.31369 -16.05773 -15.80698 -15.66481 -14.80805 -14.64942 -14.54860 -14.26580 -13.62172 -13.47801 -13.30546 -12.94169 -12.77462 -12.52387 -12.24144 -11.99618 -11.69245 -11.51598 -11.42309 -11.20184 -11.01034 -10.94160 -10.71050 -10.55072 -10.44064 -10.07192 -10.00458 -9.78642 -9.57063 -9.34455 -9.26560 -9.07632 -8.64374 -8.50090 -8.13229 -6.91359 -5.99291 -4.13465 1.39313 1.53496 3.20718 3.21633 3.31958 3.36014 3.83093 4.36547 4.75840 4.82388 4.97489 4.99773 5.01995 5.11909 5.20613 5.28133 5.39492 5.45817 5.59105 5.80196 5.83960 5.90292 5.93579 6.01740 6.07125 6.30889 6.33553 6.47341 6.54438 6.60255 6.60973 6.73040 6.78301 6.82068 6.86845 6.99401 7.05875 7.10284 7.17061 7.39697 7.47290 7.58350 7.78334 7.80577 8.15156 8.25574 8.78005 8.92145 9.19639 9.55900 10.96440 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.004366 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.847404 B = 6411.712464 C = 7400.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.319 6.319 3 C 0.123 3.877 4 C -0.216 4.216 5 C -0.080 4.080 6 C -0.146 4.146 7 C -0.060 4.060 8 C 0.145 3.855 9 H 0.107 0.893 10 O -0.550 6.550 11 C 0.053 3.947 12 N -0.677 5.677 13 C 0.232 3.768 14 C -0.534 4.534 15 H 0.051 0.949 16 C 0.071 3.929 17 N -0.883 5.883 18 Si 0.882 3.118 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.284 1.284 22 C -0.080 4.080 23 C -0.127 4.127 24 C -0.118 4.118 25 C -0.108 4.108 26 C -0.142 4.142 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.053 0.947 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.123 0.877 33 H 0.370 0.630 34 H 0.040 0.960 35 H 0.058 0.942 36 H 0.358 0.642 37 H 0.262 0.738 38 H 0.051 0.949 39 H 0.060 0.940 40 H 0.056 0.944 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.047 0.953 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.999 -6.621 3.717 14.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.233 6.233 3 C 0.079 3.921 4 C -0.235 4.235 5 C -0.098 4.098 6 C -0.164 4.164 7 C -0.061 4.061 8 C 0.085 3.915 9 H 0.125 0.875 10 O -0.355 6.355 11 C -0.078 4.078 12 N -0.311 5.311 13 C 0.143 3.857 14 C -0.574 4.574 15 H 0.069 0.931 16 C -0.131 4.131 17 N -0.521 5.521 18 Si 0.710 3.290 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.210 1.210 22 C -0.119 4.119 23 C -0.164 4.164 24 C -0.155 4.155 25 C -0.147 4.147 26 C -0.161 4.161 27 H 0.072 0.928 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.141 0.859 33 H 0.218 0.782 34 H 0.058 0.942 35 H 0.077 0.923 36 H 0.179 0.821 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.066 0.934 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.485 -7.861 4.130 14.517 hybrid contribution -1.190 2.588 -1.064 3.040 sum -12.675 -5.273 3.066 14.067 Atomic orbital electron populations 1.23008 0.78775 1.03645 1.01206 1.86065 1.21073 1.27170 1.88964 1.18972 0.92263 0.83963 0.96947 1.21141 0.99628 0.92502 1.10200 1.20863 0.94507 0.96844 0.97562 1.20860 0.93697 0.98317 1.03515 1.20612 0.97657 0.92374 0.95466 1.21062 0.86310 0.91891 0.92234 0.87548 1.86586 1.76240 1.18434 1.54251 1.22166 0.92695 1.00391 0.92537 1.61073 1.03238 1.55217 1.11605 1.19018 0.91134 0.90312 0.85238 1.21854 1.29324 0.91465 1.14747 0.93063 1.24944 0.94775 0.98660 0.94746 1.69810 1.38013 1.24992 1.19334 0.86700 0.78464 0.83939 0.79851 1.20021 1.21217 1.21008 1.22142 0.96852 0.92156 1.00700 1.22566 0.96509 0.99427 0.97940 1.22259 0.96937 0.98001 0.98346 1.22266 0.95841 0.97864 0.98691 1.20253 0.91154 0.98300 1.06363 0.92781 0.88457 0.92844 0.85891 0.85968 0.85916 0.78239 0.94168 0.92329 0.82052 0.92827 0.93010 0.92103 0.92494 0.93974 0.93785 0.92996 0.93176 0.93435 0.85091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.81 101.05 0.99 1.23 16 2 O -0.32 -4.08 10.50 -19.44 -0.20 -4.29 16 3 C 0.12 1.72 6.69 -39.22 -0.26 1.46 16 4 C -0.22 -2.70 9.04 -39.44 -0.36 -3.06 16 5 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 6 C -0.15 -2.13 9.32 -39.56 -0.37 -2.50 16 7 C -0.06 -0.95 4.97 -104.65 -0.52 -1.47 16 8 C 0.14 2.53 3.45 -27.88 -0.10 2.44 16 9 H 0.11 1.88 8.00 -51.93 -0.42 1.46 16 10 O -0.55 -10.06 12.78 -35.23 -0.45 -10.52 16 11 C 0.05 1.07 4.65 -3.82 -0.02 1.05 16 12 N -0.68 -15.17 5.98 -99.99 -0.60 -15.77 16 13 C 0.23 5.40 0.51 -131.63 -0.07 5.34 16 14 C -0.53 -13.69 6.39 -34.44 -0.22 -13.91 16 15 H 0.05 1.36 7.35 -52.49 -0.39 0.98 16 16 C 0.07 1.83 5.21 -17.82 -0.09 1.74 16 17 N -0.88 -22.93 10.72 55.43 0.59 -22.34 16 18 Si 0.88 20.40 29.54 -169.99 -5.02 15.38 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 C -0.08 -1.84 4.93 -25.03 -0.12 -1.97 16 23 C -0.13 -2.47 6.91 -24.69 -0.17 -2.65 16 24 C -0.12 -2.22 6.83 -25.07 -0.17 -2.39 16 25 C -0.11 -2.29 5.56 -25.62 -0.14 -2.43 16 26 C -0.14 -2.14 9.61 -39.43 -0.38 -2.52 16 27 H 0.05 0.40 7.66 -51.93 -0.40 0.00 16 28 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 30 H 0.12 1.20 6.30 -52.49 -0.33 0.87 16 31 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.12 1.70 6.78 -52.49 -0.36 1.34 16 33 H 0.37 6.07 7.50 45.56 0.34 6.41 16 34 H 0.04 0.90 7.16 -51.93 -0.37 0.53 16 35 H 0.06 1.19 6.65 -51.93 -0.35 0.85 16 36 H 0.36 8.78 6.55 -39.29 -0.26 8.53 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.05 1.27 7.83 -51.93 -0.41 0.87 16 39 H 0.06 1.49 7.58 -51.93 -0.39 1.10 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 44 H 0.05 1.03 6.87 -51.93 -0.36 0.67 16 45 H 0.05 1.02 7.38 -51.93 -0.38 0.64 16 46 H 0.13 1.87 8.04 -52.49 -0.42 1.45 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -27.60 361.13 -9.18 -36.78 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -6.55 Total: 16.36 kcal Atomic # 6 Polarization: -18.66 SS G_CDS: -2.39 Total: -21.05 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.00 Total: -38.11 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -0.65 Total: -14.80 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.60 -9.18 -36.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250743490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.181 kcal (2) G-P(sol) polarization free energy of solvation -27.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds