Wall clock time and date at job start Tue Mar 31 2020 10:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35903 * 117.00028 * 2 1 4 4 C 1.38757 * 120.05610 * 0.02562 * 3 2 1 5 5 C 1.38114 * 119.94486 * 180.02562 * 4 3 2 6 6 C 1.38294 * 120.05743 * 0.02562 * 5 4 3 7 7 C 1.38234 * 120.10954 * 0.02562 * 6 5 4 8 8 C 1.50704 * 119.97308 * 179.97438 * 7 6 5 9 9 H 1.08995 * 109.47667 * 160.00169 * 8 7 6 10 10 O 1.42900 * 109.47126 * 39.99696 * 8 7 6 11 11 C 1.53001 * 109.46907 * 279.99921 * 8 7 6 12 12 N 1.46899 * 109.47065 * 184.99712 * 11 8 7 13 13 C 1.46904 * 111.00094 * 175.66465 * 12 11 8 14 14 C 1.50708 * 110.01478 * 54.92223 * 13 12 11 15 15 H 1.08000 * 119.99898 * 244.50291 * 14 13 12 16 16 C 1.37881 * 119.99482 * 64.50810 * 14 13 12 17 17 N 1.31503 * 120.00389 * 354.76966 * 16 14 13 18 18 Si 1.86799 * 119.99371 * 174.49523 * 16 14 13 19 19 H 1.48501 * 109.47522 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47302 * 119.99824 * 18 16 14 21 21 H 1.48497 * 109.47193 * 239.99694 * 18 16 14 22 22 C 1.54268 * 110.03390 * 176.31157 * 13 12 11 23 23 C 1.54973 * 104.15527 * 95.75397 * 22 13 12 24 24 C 1.54890 * 102.77476 * 37.89042 * 23 22 13 25 25 C 1.53873 * 110.03083 * 293.53347 * 13 12 11 26 26 C 1.38172 * 120.05769 * 0.23508 * 7 6 5 27 27 H 1.09003 * 109.47325 * 60.00033 * 1 2 3 28 28 H 1.08998 * 109.47464 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47521 * 300.00007 * 1 2 3 30 30 H 1.08000 * 120.02790 * 359.97438 * 4 3 2 31 31 H 1.08006 * 119.97519 * 179.97438 * 5 4 3 32 32 H 1.07995 * 119.94226 * 179.97438 * 6 5 4 33 33 H 0.96695 * 114.00199 * 300.00758 * 10 8 7 34 34 H 1.09004 * 109.47151 * 65.00315 * 11 8 7 35 35 H 1.09000 * 109.47390 * 305.00165 * 11 8 7 36 36 H 1.00902 * 111.00183 * 299.61672 * 12 11 8 37 37 H 0.97005 * 119.99881 * 180.02562 * 17 16 14 38 38 H 1.08994 * 110.48641 * 214.40332 * 22 13 12 39 39 H 1.08998 * 110.48433 * 337.05239 * 22 13 12 40 40 H 1.08997 * 110.71801 * 279.57338 * 23 22 13 41 41 H 1.09000 * 110.91915 * 156.29615 * 23 22 13 42 42 H 1.09001 * 110.48258 * 203.40156 * 24 23 22 43 43 H 1.09002 * 110.48675 * 80.76204 * 24 23 22 44 44 H 1.08993 * 110.03344 * 359.94868 * 25 13 12 45 45 H 1.09000 * 110.03119 * 121.38346 * 25 13 12 46 46 H 1.08001 * 120.03055 * 179.74224 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2914 2.3754 0.0005 5 6 1.9208 3.6047 0.0000 6 6 3.3019 3.6758 -0.0016 7 6 4.0559 2.5172 -0.0032 8 6 5.5607 2.5982 -0.0055 9 1 5.9761 1.6534 0.3449 10 8 5.9822 3.6542 0.8601 11 6 6.0543 2.8763 -1.4268 12 7 7.5225 2.8367 -1.4519 13 6 8.0302 2.9977 -2.8209 14 6 7.4787 4.2608 -3.4305 15 1 6.8209 4.2054 -4.2852 16 6 7.8142 5.4872 -2.8969 17 7 8.5307 5.5515 -1.7960 18 14 7.2574 7.0572 -3.7421 19 1 6.4762 6.7148 -4.9577 20 1 6.4081 7.8452 -2.8130 21 1 8.4457 7.8599 -4.1278 22 6 9.5721 3.0454 -2.8106 23 6 9.9985 1.5869 -3.1151 24 6 8.9469 1.1333 -4.1578 25 6 7.6327 1.7823 -3.6768 26 6 3.4310 1.2849 -0.0081 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.2128 2.3204 0.0005 31 1 1.3339 4.5114 0.0000 32 1 3.7921 4.6381 -0.0024 33 1 5.6491 4.5262 0.6080 34 1 5.7120 3.8614 -1.7441 35 1 5.6587 2.1188 -2.1035 36 1 7.9136 3.5345 -0.8368 37 1 8.7663 6.4143 -1.4205 38 1 9.9381 3.7193 -3.5850 39 1 9.9376 3.3539 -1.8311 40 1 9.9414 0.9729 -2.2164 41 1 11.0020 1.5554 -3.5395 42 1 8.8570 0.0470 -4.1611 43 1 9.2117 1.4981 -5.1503 44 1 7.0639 1.0726 -3.0761 45 1 7.0410 2.1061 -4.5330 46 1 4.0206 0.3800 -0.0136 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250743490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:33 Heat of formation + Delta-G solvation = -90.281009 kcal Electronic energy + Delta-G solvation = -25839.654805 eV Core-core repulsion = 22307.046347 eV Total energy + Delta-G solvation = -3532.608458 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.20908 -39.78800 -38.95301 -37.25648 -34.87298 -33.75461 -32.48550 -31.19094 -29.46535 -29.27871 -28.19685 -27.20047 -25.61693 -23.58234 -23.51390 -21.81600 -21.16066 -20.19882 -19.13925 -18.24101 -17.36074 -17.29962 -16.88103 -16.62913 -16.62387 -16.21383 -16.03180 -15.81962 -15.21443 -14.63025 -14.57107 -14.36523 -14.22540 -13.78839 -13.56094 -13.37732 -13.18010 -13.09899 -12.84270 -12.66078 -12.57189 -12.38462 -12.28587 -11.95032 -11.78520 -11.71400 -11.59524 -11.50768 -11.19380 -11.11950 -10.94778 -10.82018 -10.45488 -9.80117 -9.17461 -8.79385 -7.94974 -6.16813 0.30450 0.46396 1.34341 1.40718 1.48162 2.35099 2.42500 2.73648 3.17757 3.59477 3.65809 3.85762 4.06458 4.13455 4.16266 4.26779 4.27189 4.32447 4.37605 4.40977 4.47143 4.55763 4.61283 4.70711 4.74008 4.90941 4.96800 5.02231 5.04325 5.11705 5.22772 5.29026 5.30047 5.33378 5.36139 5.44464 5.46665 5.64685 5.70627 5.74219 5.78444 5.80243 5.91119 6.31485 6.45697 6.75564 6.85372 7.02184 7.26385 7.55163 8.95937 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014175 B = 0.004366 C = 0.003782 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1974.847404 B = 6411.712464 C = 7400.885768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.336 6.336 3 C 0.119 3.881 4 C -0.210 4.210 5 C -0.078 4.078 6 C -0.162 4.162 7 C -0.075 4.075 8 C 0.157 3.843 9 H 0.103 0.897 10 O -0.561 6.561 11 C 0.065 3.935 12 N -0.674 5.674 13 C 0.223 3.777 14 C -0.546 4.546 15 H 0.034 0.966 16 C 0.039 3.961 17 N -0.896 5.896 18 Si 0.932 3.068 19 H -0.280 1.280 20 H -0.280 1.280 21 H -0.285 1.285 22 C -0.077 4.077 23 C -0.118 4.118 24 C -0.111 4.111 25 C -0.106 4.106 26 C -0.160 4.160 27 H 0.064 0.936 28 H 0.119 0.881 29 H 0.067 0.933 30 H 0.155 0.845 31 H 0.151 0.849 32 H 0.123 0.877 33 H 0.376 0.624 34 H 0.014 0.986 35 H 0.055 0.945 36 H 0.344 0.656 37 H 0.261 0.739 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.036 0.964 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 -7.375 3.628 16.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.250 6.250 3 C 0.073 3.927 4 C -0.228 4.228 5 C -0.096 4.096 6 C -0.180 4.180 7 C -0.076 4.076 8 C 0.097 3.903 9 H 0.121 0.879 10 O -0.368 6.368 11 C -0.065 4.065 12 N -0.306 5.306 13 C 0.133 3.867 14 C -0.586 4.586 15 H 0.052 0.948 16 C -0.163 4.163 17 N -0.535 5.535 18 Si 0.760 3.240 19 H -0.205 1.205 20 H -0.206 1.206 21 H -0.211 1.211 22 C -0.116 4.116 23 C -0.155 4.155 24 C -0.149 4.149 25 C -0.145 4.145 26 C -0.178 4.178 27 H 0.082 0.918 28 H 0.137 0.863 29 H 0.085 0.915 30 H 0.173 0.827 31 H 0.169 0.831 32 H 0.141 0.859 33 H 0.225 0.775 34 H 0.033 0.967 35 H 0.073 0.927 36 H 0.164 0.836 37 H 0.070 0.930 38 H 0.046 0.954 39 H 0.057 0.943 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.055 0.945 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.230 -8.627 4.036 16.302 hybrid contribution -0.752 2.799 -1.033 3.077 sum -13.982 -5.828 3.003 15.443 Atomic orbital electron populations 1.23357 0.76350 1.05604 1.02319 1.86047 1.23597 1.26677 1.88724 1.19070 0.92023 0.85060 0.96508 1.21505 1.01215 0.91665 1.08423 1.21203 0.93834 0.98300 0.96257 1.21016 0.94854 0.97929 1.04200 1.20382 0.96316 0.93362 0.97528 1.20823 0.87933 0.91382 0.90116 0.87887 1.86548 1.76711 1.19049 1.54463 1.22066 0.91342 0.98716 0.94424 1.61104 1.04413 1.54211 1.10851 1.19139 0.91303 0.90441 0.85820 1.22008 1.29249 0.92965 1.14362 0.94763 1.25417 0.94991 1.00658 0.95206 1.69900 1.38465 1.25256 1.19863 0.85924 0.77907 0.81333 0.78872 1.20468 1.20632 1.21116 1.22007 0.96785 0.94222 0.98550 1.22492 0.97855 0.96620 0.98549 1.22234 0.94946 0.99562 0.98133 1.22201 0.97165 0.97151 0.97942 1.20326 0.92282 0.97966 1.07258 0.91758 0.86302 0.91490 0.82734 0.83126 0.85880 0.77519 0.96736 0.92689 0.83588 0.92956 0.95361 0.94340 0.92018 0.91846 0.90944 0.92484 0.92870 0.94472 0.85218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 9.81 113.37 1.11 1.35 16 2 O -0.34 -8.00 10.50 -92.46 -0.97 -8.97 16 3 C 0.12 3.14 6.69 22.51 0.15 3.29 16 4 C -0.21 -4.69 9.04 22.36 0.20 -4.49 16 5 C -0.08 -1.84 10.04 22.25 0.22 -1.62 16 6 C -0.16 -4.66 9.32 22.28 0.21 -4.45 16 7 C -0.07 -2.38 4.97 -19.88 -0.10 -2.48 16 8 C 0.16 5.64 3.45 29.85 0.10 5.74 16 9 H 0.10 3.73 8.00 -2.39 -0.02 3.71 16 10 O -0.56 -21.09 12.78 -148.98 -1.90 -22.99 16 11 C 0.07 2.72 4.65 86.30 0.40 3.12 16 12 N -0.67 -30.93 5.98 -470.26 -2.81 -33.75 16 13 C 0.22 10.54 0.51 3.51 0.00 10.54 16 14 C -0.55 -28.67 6.39 25.60 0.16 -28.51 16 15 H 0.03 1.87 7.35 -2.91 -0.02 1.85 16 16 C 0.04 2.01 5.21 84.66 0.44 2.45 16 17 N -0.90 -47.57 10.72 21.45 0.23 -47.34 16 18 Si 0.93 42.45 29.54 68.60 2.03 44.47 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 C -0.08 -3.59 4.93 31.70 0.16 -3.44 16 23 C -0.12 -4.43 6.91 31.91 0.22 -4.21 16 24 C -0.11 -3.98 6.83 31.67 0.22 -3.76 16 25 C -0.11 -4.46 5.56 31.32 0.17 -4.29 16 26 C -0.16 -4.80 9.61 22.37 0.21 -4.59 16 27 H 0.06 0.75 7.66 -2.39 -0.02 0.73 16 28 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.07 0.74 7.66 -2.38 -0.02 0.72 16 30 H 0.16 2.41 6.30 -2.91 -0.02 2.39 16 31 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 32 H 0.12 3.42 6.78 -2.91 -0.02 3.40 16 33 H 0.38 12.78 7.50 -74.06 -0.56 12.22 16 34 H 0.01 0.68 7.16 -2.38 -0.02 0.66 16 35 H 0.05 2.30 6.65 -2.39 -0.02 2.29 16 36 H 0.34 17.44 6.55 -89.69 -0.59 16.85 16 37 H 0.26 13.44 8.31 -92.70 -0.77 12.67 16 38 H 0.03 1.40 7.83 -2.39 -0.02 1.39 16 39 H 0.04 1.93 7.58 -2.39 -0.02 1.91 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 43 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 44 H 0.05 2.16 6.87 -2.39 -0.02 2.15 16 45 H 0.04 1.60 7.38 -2.39 -0.02 1.58 16 46 H 0.13 3.77 8.04 -2.91 -0.02 3.75 16 Total: -1.00 -59.91 361.13 0.30 -59.60 By element: Atomic # 1 Polarization: 44.46 SS G_CDS: -0.16 Total: 44.30 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 3.89 Total: -35.33 kcal Atomic # 7 Polarization: -78.50 SS G_CDS: -2.58 Total: -81.08 kcal Atomic # 8 Polarization: -29.09 SS G_CDS: -2.88 Total: -31.96 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -59.91 0.30 -59.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250743490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.678 kcal (2) G-P(sol) polarization free energy of solvation -59.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.281 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds