Wall clock time and date at job start Tue Mar 31 2020 10:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45200 * 109.47185 * 2 1 4 4 C 1.34711 * 117.00243 * 179.97438 * 3 2 1 5 5 O 1.21474 * 119.99972 * 359.97438 * 4 3 2 6 6 C 1.47720 * 120.00341 * 179.97438 * 4 3 2 7 7 C 1.39633 * 120.15149 * 179.97438 * 6 4 3 8 8 C 1.37939 * 119.84902 * 180.30153 * 7 6 4 9 9 C 1.38378 * 120.14758 * 359.44591 * 8 7 6 10 10 C 1.50702 * 119.84563 * 180.28497 * 9 8 7 11 11 C 1.52999 * 109.46882 * 270.27055 * 10 9 8 12 12 H 1.09001 * 109.47351 * 55.00313 * 11 10 9 13 13 C 1.52995 * 109.47358 * 175.00147 * 11 10 9 14 14 N 1.46901 * 109.47163 * 295.00722 * 11 10 9 15 15 C 1.46897 * 111.00125 * 156.96076 * 14 11 10 16 16 H 1.09000 * 109.47608 * 347.78055 * 15 14 11 17 17 C 1.53006 * 109.47517 * 107.78366 * 15 14 11 18 18 C 1.50698 * 109.46981 * 227.78196 * 15 14 11 19 19 H 1.08002 * 120.00209 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99877 * 179.97438 * 18 15 14 21 21 N 1.31517 * 120.00349 * 0.02562 * 20 18 15 22 22 Si 1.86805 * 119.99922 * 180.02562 * 20 18 15 23 23 H 1.48501 * 109.47063 * 60.00120 * 22 20 18 24 24 H 1.48495 * 109.46998 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47086 * 300.00250 * 22 20 18 26 26 C 1.38368 * 120.30211 * 0.55392 * 9 8 7 27 27 C 1.37938 * 120.15110 * 359.72983 * 26 9 8 28 28 H 1.09003 * 109.46370 * 60.00437 * 1 2 3 29 29 H 1.08997 * 109.46937 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47263 * 300.00333 * 1 2 3 31 31 H 1.08996 * 109.47263 * 239.99667 * 2 1 3 32 32 H 1.09002 * 109.47111 * 119.99580 * 2 1 3 33 33 H 1.08003 * 120.07461 * 0.02562 * 7 6 4 34 34 H 1.08000 * 119.92778 * 179.70147 * 8 7 6 35 35 H 1.08999 * 109.47399 * 30.27187 * 10 9 8 36 36 H 1.08999 * 109.46886 * 150.27311 * 10 9 8 37 37 H 1.09001 * 109.47063 * 63.63561 * 13 11 10 38 38 H 1.08997 * 109.47569 * 183.62967 * 13 11 10 39 39 H 1.09003 * 109.47166 * 303.63606 * 13 11 10 40 40 H 1.00897 * 111.00444 * 33.00033 * 14 11 10 41 41 H 1.08998 * 109.46858 * 306.80321 * 17 15 14 42 42 H 1.08997 * 109.46826 * 66.79931 * 17 15 14 43 43 H 1.08994 * 109.47184 * 186.80492 * 17 15 14 44 44 H 0.97001 * 120.00017 * 179.97438 * 21 20 18 45 45 H 1.08001 * 119.92276 * 179.74749 * 26 9 8 46 46 H 1.08004 * 120.07951 * 179.97438 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3495 1.5455 0.0005 5 8 4.0895 0.5822 0.0015 6 6 3.9142 2.9105 0.0000 7 6 5.2980 3.0971 0.0011 8 6 5.8185 4.3745 0.0069 9 6 4.9727 5.4696 0.0000 10 6 5.5488 6.8622 -0.0001 11 6 5.7425 7.3340 1.4424 12 1 6.3538 6.6109 1.9823 13 6 6.4415 8.6950 1.4443 14 7 4.4335 7.4549 2.0980 15 6 4.5656 7.3638 3.5582 16 1 5.5662 7.0132 3.8114 17 6 4.3368 8.7438 4.1781 18 6 3.5433 6.3959 4.0957 19 1 2.8631 5.8985 3.4203 20 6 3.4763 6.1454 5.4499 21 7 4.3042 6.7515 6.2726 22 14 2.2094 4.9451 6.1162 23 1 2.4318 3.6059 5.5142 24 1 2.3430 4.8532 7.5922 25 1 0.8462 5.4224 5.7717 26 6 3.6005 5.2920 -0.0011 27 6 3.0665 4.0201 -0.0010 28 1 -0.3632 0.5138 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8900 33 1 5.9593 2.2432 0.0019 34 1 6.8886 4.5202 0.0126 35 1 6.5105 6.8576 -0.5131 36 1 4.8657 7.5379 -0.5148 37 1 5.8012 9.4330 0.9610 38 1 6.6374 9.0014 2.4718 39 1 7.3838 8.6203 0.9015 40 1 3.7889 6.7613 1.7494 41 1 4.9955 9.4699 3.7017 42 1 3.2990 9.0417 4.0285 43 1 4.5528 8.7029 5.2457 44 1 4.2568 6.5755 7.2253 45 1 2.9460 6.1511 -0.0024 46 1 1.9953 3.8828 -0.0015 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257150421.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:45 Heat of formation + Delta-G solvation = -93.768945 kcal Electronic energy + Delta-G solvation = -25196.794491 eV Core-core repulsion = 21664.034784 eV Total energy + Delta-G solvation = -3532.759706 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70205 -40.31479 -38.27452 -37.65954 -35.53128 -33.56593 -32.68074 -32.02435 -31.68239 -29.08125 -28.03339 -27.08786 -24.91756 -23.77401 -23.41239 -22.24703 -21.66510 -21.11468 -19.15858 -18.60162 -18.12251 -17.64938 -16.87601 -16.54921 -16.42476 -15.98045 -15.54730 -15.38060 -15.23055 -14.88604 -14.47749 -14.26988 -14.24097 -13.67639 -13.63882 -13.31544 -13.27562 -13.03159 -13.00736 -12.85612 -12.83060 -12.73417 -12.56841 -12.35094 -12.23634 -12.04611 -11.95414 -11.74943 -11.63057 -11.59766 -11.45308 -10.87948 -10.53827 -9.99188 -9.80287 -9.00560 -8.12233 -6.26448 -0.38020 0.38248 1.38093 1.38594 1.40905 1.45875 1.56431 2.38926 2.73380 3.15196 3.54778 3.67941 3.81275 3.85564 3.96034 3.97403 4.03079 4.19832 4.28937 4.34976 4.39206 4.53418 4.58666 4.73260 4.81796 4.85781 4.88611 4.90715 5.00974 5.03422 5.05745 5.06261 5.16586 5.24069 5.27925 5.28404 5.36138 5.38746 5.49871 5.54717 5.59964 5.71806 5.86818 6.01424 6.20868 6.48812 6.58603 6.84278 7.10833 7.43783 8.91712 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010326 B = 0.004888 C = 0.003608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2711.019217 B = 5726.801805 C = 7759.411594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.052 3.948 3 O -0.356 6.356 4 C 0.513 3.487 5 O -0.539 6.539 6 C -0.157 4.157 7 C -0.061 4.061 8 C -0.132 4.132 9 C -0.045 4.045 10 C -0.078 4.078 11 C 0.085 3.915 12 H 0.014 0.986 13 C -0.131 4.131 14 N -0.685 5.685 15 C 0.219 3.781 16 H -0.023 1.023 17 C -0.107 4.107 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.019 3.981 21 N -0.914 5.914 22 Si 0.947 3.053 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.267 1.267 26 C -0.134 4.134 27 C -0.057 4.057 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.105 0.895 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.032 0.968 39 H 0.076 0.924 40 H 0.335 0.665 41 H 0.029 0.971 42 H 0.022 0.978 43 H 0.046 0.954 44 H 0.261 0.739 45 H 0.146 0.854 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.236 -6.561 -16.380 17.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.021 4.021 3 O -0.273 6.273 4 C 0.360 3.640 5 O -0.431 6.431 6 C -0.158 4.158 7 C -0.079 4.079 8 C -0.149 4.149 9 C -0.045 4.045 10 C -0.116 4.116 11 C -0.025 4.025 12 H 0.032 0.968 13 C -0.189 4.189 14 N -0.319 5.319 15 C 0.110 3.890 16 H -0.005 1.005 17 C -0.166 4.166 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.181 4.181 21 N -0.554 5.554 22 Si 0.773 3.227 23 H -0.203 1.203 24 H -0.209 1.209 25 H -0.192 1.192 26 C -0.152 4.152 27 C -0.076 4.076 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.094 0.906 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.169 0.831 35 H 0.124 0.876 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.051 0.949 39 H 0.095 0.905 40 H 0.155 0.845 41 H 0.048 0.952 42 H 0.042 0.958 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.164 0.836 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -2.019 -6.170 -16.194 17.447 hybrid contribution -0.314 -1.887 1.181 2.248 sum -2.333 -8.057 -15.013 17.197 Atomic orbital electron populations 1.21838 0.90167 1.04564 1.03747 1.23362 0.97252 0.78781 1.02699 1.86557 1.22921 1.34123 1.83706 1.21402 0.80916 0.89961 0.71673 1.90777 1.61051 1.43313 1.47958 1.19199 0.94719 0.89860 1.11992 1.21336 0.93165 0.98516 0.94895 1.21251 1.01275 0.90983 1.01416 1.20504 0.93802 0.96551 0.93629 1.20931 1.03243 0.91339 0.96062 1.21595 0.90853 0.96612 0.93446 0.96774 1.21763 1.00031 0.96115 1.00967 1.60899 1.09984 1.55095 1.05873 1.18901 0.93317 0.92811 0.83936 1.00533 1.21542 0.98031 0.96764 1.00247 1.21783 1.18324 1.25021 0.92888 0.92709 1.25627 0.97525 0.97529 0.97428 1.70025 1.38342 1.43535 1.03464 0.85775 0.80223 0.79482 0.77203 1.20338 1.20886 1.19165 1.21337 0.95266 0.97553 1.01012 1.21587 1.00725 0.91433 0.93811 0.90800 0.87786 0.91786 0.90579 0.91705 0.84479 0.83078 0.87628 0.88614 0.91602 0.94891 0.90496 0.84524 0.95187 0.95841 0.93479 0.92970 0.83608 0.83427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.29 71.98 0.74 -1.36 16 2 C 0.05 1.09 6.20 71.98 0.45 1.54 16 3 O -0.36 -9.67 9.47 -56.21 -0.53 -10.20 16 4 C 0.51 15.96 7.90 70.33 0.56 16.51 16 5 O -0.54 -18.75 16.14 19.92 0.32 -18.42 16 6 C -0.16 -4.69 5.87 -20.10 -0.12 -4.81 16 7 C -0.06 -1.73 9.60 22.54 0.22 -1.51 16 8 C -0.13 -3.42 9.68 22.23 0.22 -3.20 16 9 C -0.04 -1.19 4.84 -19.80 -0.10 -1.28 16 10 C -0.08 -1.88 4.98 29.85 0.15 -1.73 16 11 C 0.09 2.79 2.55 44.91 0.11 2.91 16 12 H 0.01 0.54 7.44 -2.39 -0.02 0.52 16 13 C -0.13 -3.80 9.19 71.98 0.66 -3.13 16 14 N -0.69 -27.65 6.22 -473.31 -2.94 -30.59 16 15 C 0.22 11.06 2.54 44.17 0.11 11.17 16 16 H -0.02 -1.30 7.20 -2.39 -0.02 -1.32 16 17 C -0.11 -5.34 9.19 71.98 0.66 -4.68 16 18 C -0.54 -29.71 8.60 25.60 0.22 -29.49 16 19 H 0.05 2.94 7.36 -2.91 -0.02 2.92 16 20 C 0.02 1.04 5.30 84.65 0.45 1.49 16 21 N -0.91 -53.24 11.40 21.45 0.24 -52.99 16 22 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 23 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 24 H -0.28 -12.97 7.11 99.48 0.71 -12.27 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 C -0.13 -3.63 8.00 22.23 0.18 -3.45 16 27 C -0.06 -1.59 9.62 22.54 0.22 -1.37 16 28 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.14 3.68 7.65 -2.91 -0.02 3.66 16 34 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.11 1.94 8.08 -2.39 -0.02 1.92 16 36 H 0.10 2.09 8.08 -2.39 -0.02 2.07 16 37 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.03 1.11 7.02 -2.39 -0.02 1.09 16 39 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 40 H 0.33 13.21 4.64 -89.70 -0.42 12.80 16 41 H 0.03 1.32 6.89 -2.39 -0.02 1.30 16 42 H 0.02 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 2.57 6.28 -2.39 -0.02 2.55 16 44 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 45 H 0.15 3.60 7.57 -2.91 -0.02 3.58 16 46 H 0.15 3.61 7.61 -2.91 -0.02 3.59 16 Total: -1.00 -66.58 375.74 4.38 -62.19 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.55 Total: 26.23 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 4.72 Total: -22.41 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -2.70 Total: -83.59 kcal Atomic # 8 Polarization: -28.42 SS G_CDS: -0.21 Total: -28.63 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -66.58 4.38 -62.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257150421.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.575 kcal (2) G-P(sol) polarization free energy of solvation -66.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds