Wall clock time and date at job start Tue Mar 31 2020 10:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45208 * 109.46664 * 2 1 4 4 C 1.34713 * 116.99431 * 180.02562 * 3 2 1 5 5 O 1.21462 * 120.00519 * 359.97438 * 4 3 2 6 6 C 1.47726 * 119.99369 * 179.97438 * 4 3 2 7 7 C 1.39621 * 120.15310 * 359.72361 * 6 4 3 8 8 C 1.37952 * 119.84789 * 179.69494 * 7 6 4 9 9 C 1.38364 * 120.14847 * 0.58110 * 8 7 6 10 10 C 1.50697 * 119.84878 * 179.74221 * 9 8 7 11 11 C 1.53005 * 109.46836 * 269.97922 * 10 9 8 12 12 H 1.09005 * 109.46990 * 304.99331 * 11 10 9 13 13 C 1.53003 * 109.47133 * 185.00214 * 11 10 9 14 14 N 1.46891 * 109.47557 * 64.99960 * 11 10 9 15 15 C 1.46896 * 111.00124 * 205.00328 * 14 11 10 16 16 C 1.53007 * 109.47320 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.47213 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00023 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47202 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47611 * 119.99569 * 21 19 17 24 24 H 1.48502 * 109.47147 * 239.99777 * 21 19 17 25 25 C 1.38366 * 120.30576 * 359.71385 * 9 8 7 26 26 C 1.37947 * 120.14940 * 359.97438 * 25 9 8 27 27 H 1.08994 * 109.47596 * 60.00066 * 1 2 3 28 28 H 1.08999 * 109.46854 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46715 * 299.99572 * 1 2 3 30 30 H 1.08995 * 109.47139 * 240.00598 * 2 1 3 31 31 H 1.08994 * 109.47596 * 119.99934 * 2 1 3 32 32 H 1.08004 * 120.07573 * 359.97239 * 7 6 4 33 33 H 1.07998 * 119.92402 * 180.29633 * 8 7 6 34 34 H 1.09004 * 109.47299 * 29.97414 * 10 9 8 35 35 H 1.08996 * 109.47457 * 149.97508 * 10 9 8 36 36 H 1.09009 * 109.46946 * 299.99418 * 13 11 10 37 37 H 1.09004 * 109.47557 * 59.99194 * 13 11 10 38 38 H 1.08995 * 109.47134 * 179.97438 * 13 11 10 39 39 H 1.00903 * 111.00037 * 328.95325 * 14 11 10 40 40 H 1.08999 * 109.47114 * 299.99401 * 15 14 11 41 41 H 1.08996 * 109.47735 * 59.99585 * 15 14 11 42 42 H 1.08999 * 109.46737 * 299.99875 * 16 15 14 43 43 H 1.09001 * 109.46853 * 60.00040 * 16 15 14 44 44 H 0.96998 * 119.99663 * 180.02562 * 20 19 17 45 45 H 1.07993 * 119.92708 * 179.97438 * 25 9 8 46 46 H 1.07995 * 120.07944 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0894 0.5824 -0.0005 6 6 3.9139 2.9107 -0.0011 7 6 3.0663 4.0201 -0.0070 8 6 3.6002 5.2921 -0.0011 9 6 4.9724 5.4699 -0.0017 10 6 5.5483 6.8624 -0.0011 11 6 5.7431 7.3343 -1.4435 12 1 6.3549 6.6111 -1.9829 13 6 6.4421 8.6953 -1.4450 14 7 4.4346 7.4551 -2.1002 15 6 4.5620 7.3176 -3.5571 16 6 3.1818 7.4482 -4.2044 17 6 3.3126 7.3077 -5.6991 18 1 4.2831 7.1422 -6.1430 19 6 2.1934 7.3914 -6.4999 20 7 1.0116 7.5934 -5.9593 21 14 2.3554 7.2166 -8.3527 22 1 3.7808 6.9970 -8.7064 23 1 1.5468 6.0593 -8.8133 24 1 1.8675 8.4549 -9.0113 25 6 5.8182 4.3749 -0.0021 26 6 5.2978 3.0973 -0.0014 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.9950 3.8828 -0.0115 33 1 2.9456 6.1512 -0.0008 34 1 4.8648 7.5382 0.5130 35 1 6.5096 6.8579 0.5126 36 1 5.8303 9.4185 -0.9056 37 1 7.4130 8.6057 -0.9577 38 1 6.5812 9.0312 -2.4725 39 1 3.7804 6.7824 -1.7293 40 1 5.2185 8.0990 -3.9398 41 1 4.9832 6.3407 -3.7945 42 1 2.5256 6.6665 -3.8216 43 1 2.7602 8.4250 -3.9672 44 1 0.2242 7.6519 -6.5228 45 1 6.8883 4.5206 -0.0029 46 1 5.9590 2.2435 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001257151131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:29 Heat of formation + Delta-G solvation = -85.318000 kcal Electronic energy + Delta-G solvation = -24422.536970 eV Core-core repulsion = 20890.143725 eV Total energy + Delta-G solvation = -3532.393246 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71172 -39.39130 -37.05257 -36.55758 -33.74936 -32.50815 -31.83980 -31.14096 -30.76173 -28.08037 -27.17194 -24.33574 -23.80313 -22.87676 -22.51835 -20.93777 -20.43179 -20.11236 -18.20030 -17.13454 -16.70401 -16.34118 -15.69149 -15.60627 -15.27696 -14.68112 -14.43961 -14.38559 -14.25299 -13.71218 -13.56199 -13.30697 -13.04098 -12.80714 -12.62386 -12.30391 -12.24568 -12.06066 -11.98034 -11.82704 -11.54009 -11.33945 -11.14861 -11.03725 -10.90631 -10.78075 -10.73533 -10.55483 -10.48605 -9.93847 -9.37377 -9.13839 -9.09729 -8.89337 -8.34330 -7.81636 -5.98698 -4.00864 0.56087 1.25357 2.40832 2.47384 3.31882 3.39232 3.43420 3.64285 4.43632 4.44093 4.62031 4.66742 4.69545 4.74775 4.76294 4.84283 5.02059 5.08924 5.19721 5.24409 5.37528 5.40634 5.43774 5.51312 5.53852 5.68458 5.72965 5.77227 5.87897 5.91511 5.98744 6.10742 6.16785 6.19483 6.30738 6.35225 6.40605 6.45120 6.53427 6.73140 7.01352 7.50591 7.60657 7.74745 7.84247 7.98237 8.09719 8.45395 9.06411 9.62920 11.12792 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008976 B = 0.003798 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.534623 B = 7369.659415 C = 9752.982689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.063 3.937 3 O -0.352 6.352 4 C 0.513 3.487 5 O -0.512 6.512 6 C -0.137 4.137 7 C -0.052 4.052 8 C -0.130 4.130 9 C -0.043 4.043 10 C -0.091 4.091 11 C 0.086 3.914 12 H 0.040 0.960 13 C -0.138 4.138 14 N -0.689 5.689 15 C 0.066 3.934 16 C 0.026 3.974 17 C -0.520 4.520 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.131 4.131 26 C -0.052 4.052 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.086 0.914 35 H 0.080 0.920 36 H 0.061 0.939 37 H 0.049 0.951 38 H 0.058 0.942 39 H 0.336 0.664 40 H 0.058 0.942 41 H 0.013 0.987 42 H 0.012 0.988 43 H 0.025 0.975 44 H 0.259 0.741 45 H 0.131 0.869 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.099 -9.432 17.136 20.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.269 6.269 4 C 0.359 3.641 5 O -0.402 6.402 6 C -0.138 4.138 7 C -0.070 4.070 8 C -0.148 4.148 9 C -0.044 4.044 10 C -0.128 4.128 11 C -0.025 4.025 12 H 0.058 0.942 13 C -0.196 4.196 14 N -0.323 5.323 15 C -0.062 4.062 16 C -0.012 4.012 17 C -0.559 4.559 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.719 3.281 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.149 4.149 26 C -0.070 4.070 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.086 0.914 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.158 0.842 33 H 0.157 0.843 34 H 0.104 0.896 35 H 0.098 0.902 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.156 0.844 40 H 0.077 0.923 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.069 0.931 45 H 0.149 0.851 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 5.116 -9.045 17.073 19.987 hybrid contribution 0.136 -1.307 -1.263 1.822 sum 5.252 -10.352 15.810 19.613 Atomic orbital electron populations 1.21819 0.92400 1.03010 1.03851 1.23049 0.95515 0.79890 1.02603 1.86564 1.23743 1.32494 1.84091 1.21209 0.80592 0.89910 0.72377 1.90809 1.60458 1.42559 1.46393 1.19068 0.94112 0.89889 1.10761 1.21500 1.00411 0.91472 0.93660 1.21211 0.94811 0.97519 1.01292 1.20316 0.93707 0.95906 0.94433 1.20983 1.01764 0.92018 0.98039 1.21475 0.92172 0.96540 0.92270 0.94180 1.21776 0.98700 0.96770 1.02307 1.60775 1.08300 1.56883 1.06334 1.22186 1.01479 0.97833 0.84713 1.19061 0.89995 0.97717 0.94384 1.21212 0.93491 1.49252 0.91935 0.92771 1.24988 0.95363 0.95307 0.98642 1.69983 0.98275 1.49852 1.35123 0.86554 0.78120 0.77658 0.85775 1.19781 1.21040 1.20968 1.20994 1.00119 0.91426 1.02378 1.21205 0.93233 0.97905 0.94663 0.91108 0.90199 0.91410 0.91088 0.91256 0.84241 0.84306 0.89560 0.90175 0.92024 0.93204 0.92323 0.84403 0.92324 0.96828 0.96932 0.95667 0.93083 0.85100 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 10.29 37.16 0.38 -0.75 16 2 C 0.06 0.62 6.20 37.16 0.23 0.85 16 3 O -0.35 -4.39 9.47 -40.53 -0.38 -4.78 16 4 C 0.51 7.12 7.90 34.61 0.27 7.40 16 5 O -0.51 -8.02 16.14 -19.24 -0.31 -8.33 16 6 C -0.14 -1.80 5.87 -104.98 -0.62 -2.42 16 7 C -0.05 -0.64 9.62 -39.17 -0.38 -1.02 16 8 C -0.13 -1.58 8.01 -39.64 -0.32 -1.90 16 9 C -0.04 -0.51 4.85 -104.53 -0.51 -1.01 16 10 C -0.09 -0.98 4.97 -27.88 -0.14 -1.12 16 11 C 0.09 1.18 2.64 -67.71 -0.18 1.00 16 12 H 0.04 0.59 7.80 -51.93 -0.40 0.18 16 13 C -0.14 -1.74 9.41 37.16 0.35 -1.39 16 14 N -0.69 -12.06 6.31 -106.73 -0.67 -12.74 16 15 C 0.07 1.41 5.42 -3.82 -0.02 1.39 16 16 C 0.03 0.68 5.23 -27.88 -0.15 0.53 16 17 C -0.52 -14.92 9.11 -34.44 -0.31 -15.23 16 18 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 C -0.13 -1.47 9.68 -39.64 -0.38 -1.85 16 26 C -0.05 -0.63 9.60 -39.17 -0.38 -1.01 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.14 1.56 7.61 -52.48 -0.40 1.16 16 33 H 0.14 1.57 7.52 -52.49 -0.39 1.18 16 34 H 0.09 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.08 0.70 8.08 -51.93 -0.42 0.28 16 36 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 37 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.82 7.45 -51.93 -0.39 0.44 16 39 H 0.34 5.73 5.49 -39.29 -0.22 5.51 16 40 H 0.06 1.25 7.44 -51.93 -0.39 0.86 16 41 H 0.01 0.29 8.05 -51.93 -0.42 -0.13 16 42 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 45 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 46 H 0.14 1.53 7.65 -52.49 -0.40 1.13 16 LS Contribution 382.88 15.07 5.77 5.77 Total: -1.00 -32.50 382.88 -9.73 -42.23 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.62 Total: 2.19 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.24 Total: -14.93 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.06 Total: -38.99 kcal Atomic # 8 Polarization: -12.41 SS G_CDS: -0.69 Total: -13.11 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -32.50 -9.73 -42.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257151131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.084 kcal (2) G-P(sol) polarization free energy of solvation -32.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds