Wall clock time and date at job start Tue Mar 31 2020 10:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.45208 * 109.46664 * 2 1 4 4 C 1.34713 * 116.99431 * 180.02562 * 3 2 1 5 5 O 1.21462 * 120.00519 * 359.97438 * 4 3 2 6 6 C 1.47726 * 119.99369 * 179.97438 * 4 3 2 7 7 C 1.39621 * 120.15310 * 359.72361 * 6 4 3 8 8 C 1.37952 * 119.84789 * 179.69494 * 7 6 4 9 9 C 1.38364 * 120.14847 * 0.58110 * 8 7 6 10 10 C 1.50697 * 119.84878 * 179.74221 * 9 8 7 11 11 C 1.53005 * 109.46836 * 269.97922 * 10 9 8 12 12 H 1.09005 * 109.46990 * 304.99331 * 11 10 9 13 13 C 1.53003 * 109.47133 * 185.00214 * 11 10 9 14 14 N 1.46891 * 109.47557 * 64.99960 * 11 10 9 15 15 C 1.46896 * 111.00124 * 205.00328 * 14 11 10 16 16 C 1.53007 * 109.47320 * 179.97438 * 15 14 11 17 17 C 1.50702 * 109.47213 * 179.97438 * 16 15 14 18 18 H 1.07994 * 119.99742 * 359.97438 * 17 16 15 19 19 C 1.37871 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31518 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00023 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47202 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47611 * 119.99569 * 21 19 17 24 24 H 1.48502 * 109.47147 * 239.99777 * 21 19 17 25 25 C 1.38366 * 120.30576 * 359.71385 * 9 8 7 26 26 C 1.37947 * 120.14940 * 359.97438 * 25 9 8 27 27 H 1.08994 * 109.47596 * 60.00066 * 1 2 3 28 28 H 1.08999 * 109.46854 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46715 * 299.99572 * 1 2 3 30 30 H 1.08995 * 109.47139 * 240.00598 * 2 1 3 31 31 H 1.08994 * 109.47596 * 119.99934 * 2 1 3 32 32 H 1.08004 * 120.07573 * 359.97239 * 7 6 4 33 33 H 1.07998 * 119.92402 * 180.29633 * 8 7 6 34 34 H 1.09004 * 109.47299 * 29.97414 * 10 9 8 35 35 H 1.08996 * 109.47457 * 149.97508 * 10 9 8 36 36 H 1.09009 * 109.46946 * 299.99418 * 13 11 10 37 37 H 1.09004 * 109.47557 * 59.99194 * 13 11 10 38 38 H 1.08995 * 109.47134 * 179.97438 * 13 11 10 39 39 H 1.00903 * 111.00037 * 328.95325 * 14 11 10 40 40 H 1.08999 * 109.47114 * 299.99401 * 15 14 11 41 41 H 1.08996 * 109.47735 * 59.99585 * 15 14 11 42 42 H 1.08999 * 109.46737 * 299.99875 * 16 15 14 43 43 H 1.09001 * 109.46853 * 60.00040 * 16 15 14 44 44 H 0.96998 * 119.99663 * 180.02562 * 20 19 17 45 45 H 1.07993 * 119.92708 * 179.97438 * 25 9 8 46 46 H 1.07995 * 120.07944 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3691 0.0000 4 6 3.3494 1.5456 -0.0005 5 8 4.0894 0.5824 -0.0005 6 6 3.9139 2.9107 -0.0011 7 6 3.0663 4.0201 -0.0070 8 6 3.6002 5.2921 -0.0011 9 6 4.9724 5.4699 -0.0017 10 6 5.5483 6.8624 -0.0011 11 6 5.7431 7.3343 -1.4435 12 1 6.3549 6.6111 -1.9829 13 6 6.4421 8.6953 -1.4450 14 7 4.4346 7.4551 -2.1002 15 6 4.5620 7.3176 -3.5571 16 6 3.1818 7.4482 -4.2044 17 6 3.3126 7.3077 -5.6991 18 1 4.2831 7.1422 -6.1430 19 6 2.1934 7.3914 -6.4999 20 7 1.0116 7.5934 -5.9593 21 14 2.3554 7.2166 -8.3527 22 1 3.7808 6.9970 -8.7064 23 1 1.5468 6.0593 -8.8133 24 1 1.8675 8.4549 -9.0113 25 6 5.8182 4.3749 -0.0021 26 6 5.2978 3.0973 -0.0014 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.9950 3.8828 -0.0115 33 1 2.9456 6.1512 -0.0008 34 1 4.8648 7.5382 0.5130 35 1 6.5096 6.8579 0.5126 36 1 5.8303 9.4185 -0.9056 37 1 7.4130 8.6057 -0.9577 38 1 6.5812 9.0312 -2.4725 39 1 3.7804 6.7824 -1.7293 40 1 5.2185 8.0990 -3.9398 41 1 4.9832 6.3407 -3.7945 42 1 2.5256 6.6665 -3.8216 43 1 2.7602 8.4250 -3.9672 44 1 0.2242 7.6519 -6.5228 45 1 6.8883 4.5206 -0.0029 46 1 5.9590 2.2435 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001257151131.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:02:28 Heat of formation + Delta-G solvation = -103.126322 kcal Electronic energy + Delta-G solvation = -24423.309197 eV Core-core repulsion = 20890.143725 eV Total energy + Delta-G solvation = -3533.165473 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.72213 -40.36691 -38.24166 -37.65583 -35.57165 -33.96228 -32.82792 -32.10090 -31.94250 -29.81155 -28.11940 -26.08359 -24.89251 -23.81723 -23.42556 -22.43336 -21.81353 -21.19882 -19.17800 -18.50601 -18.12853 -17.65841 -16.98698 -16.68823 -16.42275 -16.32324 -15.64557 -15.48492 -15.25559 -14.97715 -14.64497 -14.48119 -14.31662 -13.88411 -13.80026 -13.64106 -13.36711 -13.04832 -12.97671 -12.89853 -12.83242 -12.78966 -12.56892 -12.38464 -12.31180 -12.07221 -11.96260 -11.68658 -11.60044 -11.57002 -11.36801 -11.19899 -10.56797 -10.05026 -9.86938 -9.25615 -8.20509 -6.31630 -0.42362 0.32978 1.38354 1.39587 1.39704 1.52992 1.55742 2.40054 2.68586 3.12953 3.38587 3.51142 3.74822 3.80936 3.93858 3.96234 4.02460 4.06804 4.28558 4.29445 4.34120 4.41917 4.50452 4.54482 4.65853 4.72341 4.77840 4.82671 4.88473 4.99540 5.00405 5.02482 5.06129 5.07773 5.20076 5.21608 5.26177 5.37605 5.44864 5.48831 5.52968 5.68665 5.79785 5.82517 6.16550 6.32285 6.57443 6.59583 6.85462 7.37564 8.91737 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008976 B = 0.003798 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3118.534623 B = 7369.659415 C = 9752.982689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 O -0.358 6.358 4 C 0.512 3.488 5 O -0.537 6.537 6 C -0.154 4.154 7 C -0.059 4.059 8 C -0.140 4.140 9 C -0.048 4.048 10 C -0.081 4.081 11 C 0.083 3.917 12 H 0.036 0.964 13 C -0.135 4.135 14 N -0.694 5.694 15 C 0.085 3.915 16 C 0.034 3.966 17 C -0.545 4.545 18 H 0.057 0.943 19 C 0.003 3.997 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.276 1.276 25 C -0.127 4.127 26 C -0.059 4.059 27 H 0.063 0.937 28 H 0.104 0.896 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.143 0.857 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.038 0.962 39 H 0.337 0.663 40 H 0.058 0.942 41 H 0.009 0.991 42 H -0.012 1.012 43 H -0.004 1.004 44 H 0.264 0.736 45 H 0.159 0.841 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.402 -9.374 17.321 20.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.020 4.020 3 O -0.275 6.275 4 C 0.359 3.641 5 O -0.429 6.429 6 C -0.155 4.155 7 C -0.077 4.077 8 C -0.158 4.158 9 C -0.048 4.048 10 C -0.118 4.118 11 C -0.026 4.026 12 H 0.054 0.946 13 C -0.193 4.193 14 N -0.328 5.328 15 C -0.044 4.044 16 C -0.004 4.004 17 C -0.583 4.583 18 H 0.076 0.924 19 C -0.195 4.195 20 N -0.569 5.569 21 Si 0.788 3.212 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.201 1.201 25 C -0.145 4.145 26 C -0.077 4.077 27 H 0.082 0.918 28 H 0.122 0.878 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.160 0.840 34 H 0.110 0.890 35 H 0.130 0.870 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.057 0.943 39 H 0.158 0.842 40 H 0.077 0.923 41 H 0.027 0.973 42 H 0.007 0.993 43 H 0.015 0.985 44 H 0.073 0.927 45 H 0.176 0.824 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 6.420 -8.981 17.276 20.502 hybrid contribution -0.304 -1.330 -1.267 1.862 sum 6.117 -10.310 16.008 20.000 Atomic orbital electron populations 1.21842 0.90392 1.04543 1.03680 1.23348 0.97098 0.78730 1.02781 1.86569 1.23066 1.34162 1.83666 1.21422 0.80887 0.90032 0.71745 1.90781 1.60996 1.43294 1.47841 1.19221 0.94853 0.89694 1.11776 1.21592 1.00736 0.91579 0.93834 1.21364 0.95511 0.97453 1.01443 1.20502 0.93518 0.96693 0.94078 1.20955 1.03602 0.91196 0.96086 1.21612 0.89956 0.97426 0.93649 0.94568 1.21769 1.00224 0.95777 1.01498 1.60714 1.10778 1.57138 1.04167 1.21773 0.98043 0.97477 0.87070 1.18900 0.92304 0.95066 0.94101 1.21630 0.93850 1.49493 0.93339 0.92437 1.25930 0.94900 0.94654 1.04013 1.70107 0.99146 1.50485 1.37202 0.85417 0.78594 0.77899 0.79244 1.18717 1.20379 1.20147 1.21290 1.01466 0.90625 1.01072 1.21390 0.92933 0.98766 0.94600 0.91825 0.87794 0.90968 0.91469 0.90578 0.83839 0.83956 0.88991 0.86964 0.92028 0.90005 0.94263 0.84249 0.92324 0.97286 0.99344 0.98514 0.92736 0.82382 0.84186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 10.29 71.98 0.74 -1.31 16 2 C 0.05 1.05 6.20 71.98 0.45 1.49 16 3 O -0.36 -9.11 9.47 -56.23 -0.53 -9.64 16 4 C 0.51 14.51 7.90 70.33 0.56 15.07 16 5 O -0.54 -17.13 16.14 19.96 0.32 -16.81 16 6 C -0.15 -4.07 5.87 -20.10 -0.12 -4.19 16 7 C -0.06 -1.48 9.62 22.54 0.22 -1.26 16 8 C -0.14 -3.31 8.01 22.23 0.18 -3.13 16 9 C -0.05 -1.03 4.85 -19.80 -0.10 -1.12 16 10 C -0.08 -1.52 4.97 29.85 0.15 -1.37 16 11 C 0.08 2.11 2.64 44.92 0.12 2.23 16 12 H 0.04 0.98 7.80 -2.38 -0.02 0.96 16 13 C -0.13 -3.07 9.41 71.98 0.68 -2.39 16 14 N -0.69 -23.95 6.31 -491.57 -3.10 -27.05 16 15 C 0.09 3.66 5.42 86.31 0.47 4.13 16 16 C 0.03 1.83 5.23 29.85 0.16 1.98 16 17 C -0.54 -31.63 9.11 25.60 0.23 -31.40 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 19 C 0.00 0.18 5.46 84.65 0.46 0.65 16 20 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 21 Si 0.96 44.76 29.54 68.60 2.03 46.78 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 24 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 25 C -0.13 -2.57 9.68 22.23 0.22 -2.35 16 26 C -0.06 -1.38 9.60 22.54 0.22 -1.17 16 27 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.14 3.31 7.61 -2.91 -0.02 3.29 16 33 H 0.14 3.19 7.52 -2.91 -0.02 3.17 16 34 H 0.09 1.67 8.08 -2.38 -0.02 1.65 16 35 H 0.11 1.45 8.08 -2.39 -0.02 1.43 16 36 H 0.06 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.04 1.04 7.45 -2.39 -0.02 1.02 16 39 H 0.34 11.46 5.49 -89.69 -0.49 10.97 16 40 H 0.06 2.50 7.44 -2.39 -0.02 2.48 16 41 H 0.01 0.39 8.05 -2.39 -0.02 0.37 16 42 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 43 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 46 H 0.14 3.08 7.65 -2.91 -0.02 3.06 16 Total: -1.00 -70.76 382.88 4.08 -66.69 By element: Atomic # 1 Polarization: 20.45 SS G_CDS: 0.46 Total: 20.91 kcal Atomic # 6 Polarization: -28.77 SS G_CDS: 4.62 Total: -24.15 kcal Atomic # 7 Polarization: -80.97 SS G_CDS: -2.82 Total: -83.78 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.21 Total: -26.45 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -70.76 4.08 -66.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001257151131.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.438 kcal (2) G-P(sol) polarization free energy of solvation -70.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds