Wall clock time and date at job start Tue Mar 31 2020 10:05:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45194 * 109.47624 * 2 1 4 4 C 1.34228 * 117.00124 * 179.97438 * 3 2 1 5 5 O 1.20819 * 120.00072 * 359.97438 * 4 3 2 6 6 C 1.50700 * 119.99771 * 179.97438 * 4 3 2 7 7 C 1.53004 * 109.46963 * 179.97438 * 6 4 3 8 8 C 1.53000 * 109.46858 * 179.97438 * 7 6 4 9 9 H 1.08994 * 109.47353 * 302.76612 * 8 7 6 10 10 C 1.52999 * 109.46767 * 182.76850 * 8 7 6 11 11 N 1.46495 * 109.47025 * 62.77314 * 8 7 6 12 12 C 1.36939 * 120.00321 * 56.37921 * 11 8 7 13 13 H 1.08000 * 119.99923 * 36.22532 * 12 11 8 14 14 C 1.38816 * 120.00021 * 216.50189 * 12 11 8 15 15 N 1.31621 * 119.99731 * 22.13229 * 14 12 11 16 16 Si 1.86789 * 120.00232 * 202.12952 * 14 12 11 17 17 H 1.48499 * 109.47142 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.47315 * 119.99951 * 16 14 12 19 19 H 1.48492 * 109.47449 * 240.00260 * 16 14 12 20 20 C 1.46504 * 120.00121 * 236.38092 * 11 8 7 21 21 C 1.50704 * 109.46939 * 269.99932 * 20 11 8 22 22 C 1.38231 * 120.00126 * 269.72462 * 21 20 11 23 23 C 1.38228 * 120.00250 * 179.77153 * 22 21 20 24 24 C 1.38241 * 119.99700 * 0.49901 * 23 22 21 25 25 C 1.38233 * 120.00233 * 359.75369 * 24 23 22 26 26 C 1.38233 * 119.99763 * 359.97438 * 25 24 23 27 27 H 1.09003 * 109.46870 * 300.00281 * 1 2 3 28 28 H 1.08999 * 109.46890 * 59.99847 * 1 2 3 29 29 H 1.09002 * 109.47673 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46870 * 239.99719 * 2 1 3 31 31 H 1.08999 * 109.46890 * 120.00153 * 2 1 3 32 32 H 1.09006 * 109.46860 * 60.00318 * 6 4 3 33 33 H 1.08993 * 109.47471 * 299.99937 * 6 4 3 34 34 H 1.09006 * 109.46685 * 60.00685 * 7 6 4 35 35 H 1.08993 * 109.47363 * 300.00477 * 7 6 4 36 36 H 1.09007 * 109.47044 * 181.54576 * 10 8 7 37 37 H 1.09007 * 109.47486 * 301.54430 * 10 8 7 38 38 H 1.08999 * 109.47659 * 61.54475 * 10 8 7 39 39 H 0.97001 * 119.99585 * 179.97438 * 15 14 12 40 40 H 1.09004 * 109.46597 * 29.99135 * 20 11 8 41 41 H 1.08995 * 109.47580 * 149.99783 * 20 11 8 42 42 H 1.08002 * 119.99790 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.00406 * 180.22962 * 23 22 21 44 44 H 1.08004 * 119.99629 * 179.72979 * 24 23 22 45 45 H 1.07997 * 120.00123 * 179.97438 * 25 24 23 46 46 H 1.08004 * 120.00063 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0141 1.3689 0.0000 4 6 3.3448 1.5446 0.0005 5 8 4.0807 0.5865 0.0015 6 6 3.9209 2.9372 0.0000 7 6 5.4488 2.8571 0.0014 8 6 6.0336 4.2709 0.0002 9 1 5.6593 4.8182 -0.8649 10 6 7.5600 4.1913 -0.0680 11 7 5.6352 4.9651 1.2272 12 6 5.9307 4.4210 2.4486 13 1 6.8604 3.8906 2.5928 14 6 5.0328 4.5462 3.4998 15 7 3.7606 4.7779 3.2544 16 14 5.6300 4.3858 5.2624 17 1 7.0925 4.1287 5.2680 18 1 5.3463 5.6445 5.9976 19 1 4.9260 3.2574 5.9228 20 6 4.9206 6.2416 1.1476 21 6 5.9152 7.3737 1.1297 22 6 6.3282 7.9496 2.3166 23 6 7.2440 8.9849 2.3005 24 6 7.7390 9.4512 1.0970 25 6 7.3220 8.8789 -0.0902 26 6 6.4104 7.8398 -0.0738 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.5845 3.4699 0.8896 33 1 3.5854 3.4689 -0.8904 34 1 5.7854 2.3243 -0.8880 35 1 5.7839 2.3255 0.8920 36 1 7.9779 5.1977 -0.0412 37 1 7.9325 3.6204 0.7826 38 1 7.8572 3.6990 -0.9940 39 1 3.1331 4.8650 3.9890 40 1 4.3241 6.2677 0.2356 41 1 4.2663 6.3463 2.0129 42 1 5.9379 7.5885 3.2566 43 1 7.5695 9.4324 3.2280 44 1 8.4512 10.2631 1.0842 45 1 7.7084 9.2435 -1.0305 46 1 6.0843 7.3928 -1.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258500134.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:20 Heat of formation + Delta-G solvation = -68.770730 kcal Electronic energy + Delta-G solvation = -25726.150761 eV Core-core repulsion = 22194.475059 eV Total energy + Delta-G solvation = -3531.675702 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.43904 -40.00181 -38.38355 -37.54037 -34.76113 -33.24961 -32.73368 -31.66623 -31.53596 -30.20712 -27.29065 -26.16535 -24.84224 -23.69598 -23.19038 -21.97550 -21.64019 -21.08636 -18.68868 -18.17099 -17.73031 -17.33494 -17.06427 -16.79760 -16.22049 -15.84773 -15.73682 -15.27870 -15.13692 -14.57606 -14.20191 -14.12354 -14.02736 -13.92351 -13.58471 -13.39909 -13.21644 -13.03350 -12.92476 -12.85795 -12.66412 -12.50973 -12.45198 -12.26167 -11.97685 -11.91809 -11.78052 -11.60346 -11.49834 -11.44045 -11.34950 -11.20716 -10.43236 -9.60493 -9.36402 -8.46531 -7.75365 -5.30069 0.71111 0.73410 1.26504 1.40425 1.47752 1.53481 1.82853 2.53946 3.08679 3.34038 3.82647 3.87168 3.99179 4.09957 4.13619 4.20837 4.29326 4.32452 4.38083 4.40825 4.50430 4.60399 4.71236 4.76504 4.82603 4.89680 4.90431 4.91415 5.00142 5.04455 5.10927 5.14213 5.24785 5.37609 5.39013 5.40545 5.55210 5.56105 5.65852 5.71849 5.78266 5.81548 5.88336 6.13810 6.37197 6.58242 6.82343 7.26956 7.96138 8.47222 9.19280 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014086 B = 0.004449 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1987.368304 B = 6291.491664 C = 7237.325381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.050 3.950 3 O -0.367 6.367 4 C 0.469 3.531 5 O -0.546 6.546 6 C -0.103 4.103 7 C -0.093 4.093 8 C 0.168 3.832 9 H 0.072 0.928 10 C -0.144 4.144 11 N -0.575 5.575 12 C -0.234 4.234 13 H 0.043 0.957 14 C -0.020 4.020 15 N -0.899 5.899 16 Si 0.924 3.076 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.299 1.299 20 C 0.178 3.822 21 C -0.087 4.087 22 C -0.126 4.126 23 C -0.134 4.134 24 C -0.139 4.139 25 C -0.125 4.125 26 C -0.125 4.125 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.044 0.956 37 H 0.031 0.969 38 H 0.065 0.935 39 H 0.249 0.751 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.126 0.874 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.054 1.691 -9.604 9.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.024 4.024 3 O -0.284 6.284 4 C 0.315 3.685 5 O -0.437 6.437 6 C -0.140 4.140 7 C -0.132 4.132 8 C 0.061 3.939 9 H 0.090 0.910 10 C -0.203 4.203 11 N -0.294 5.294 12 C -0.365 4.365 13 H 0.060 0.940 14 C -0.218 4.218 15 N -0.543 5.543 16 Si 0.755 3.245 17 H -0.204 1.204 18 H -0.216 1.216 19 H -0.227 1.227 20 C 0.052 3.948 21 C -0.089 4.089 22 C -0.145 4.145 23 C -0.152 4.152 24 C -0.157 4.157 25 C -0.142 4.142 26 C -0.144 4.144 27 H 0.080 0.920 28 H 0.092 0.908 29 H 0.122 0.878 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.083 0.917 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.050 0.950 38 H 0.084 0.916 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.090 0.910 42 H 0.107 0.893 43 H 0.144 0.856 44 H 0.159 0.841 45 H 0.161 0.839 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.028 1.357 -9.502 9.653 hybrid contribution 0.263 -0.541 1.755 1.855 sum -0.765 0.816 -7.747 7.827 Atomic orbital electron populations 1.21812 0.90212 1.04410 1.03601 1.23273 0.97345 0.79606 1.02160 1.86552 1.24515 1.33558 1.83782 1.24385 0.80293 0.93491 0.70377 1.90570 1.61058 1.44418 1.47647 1.21395 0.97001 0.89130 1.06496 1.21591 0.92083 0.98742 1.00773 1.20603 0.93270 0.90913 0.89069 0.90954 1.22031 0.97333 1.00569 1.00383 1.43896 1.66884 1.17731 1.00905 1.18840 0.98616 1.30780 0.88263 0.93979 1.25349 0.94654 1.01722 1.00102 1.69999 1.01026 1.52751 1.30567 0.85888 0.77981 0.76686 0.83957 1.20402 1.21640 1.22680 1.19907 0.91663 0.82148 1.01066 1.21060 0.98905 0.95863 0.93107 1.21037 0.98856 0.96986 0.97663 1.21308 0.97601 0.97202 0.99062 1.21298 1.01099 1.01168 0.92141 1.21383 0.97488 0.96484 0.98887 1.21184 0.98345 0.97645 0.97235 0.91997 0.90840 0.87787 0.90862 0.92459 0.87065 0.86878 0.91670 0.94213 0.93686 0.95013 0.91591 0.94175 0.93782 0.90971 0.89285 0.85621 0.84063 0.83917 0.85638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.76 10.29 71.98 0.74 -2.02 16 2 C 0.05 1.34 6.19 71.98 0.45 1.79 16 3 O -0.37 -12.73 10.22 -51.39 -0.53 -13.25 16 4 C 0.47 18.06 7.96 71.24 0.57 18.62 16 5 O -0.55 -23.20 15.73 21.99 0.35 -22.85 16 6 C -0.10 -3.87 5.68 29.85 0.17 -3.70 16 7 C -0.09 -3.54 3.83 30.60 0.12 -3.42 16 8 C 0.17 6.21 2.78 44.99 0.13 6.34 16 9 H 0.07 2.37 7.77 -2.39 -0.02 2.35 16 10 C -0.14 -5.02 9.19 71.98 0.66 -4.36 16 11 N -0.57 -25.15 1.71 -682.34 -1.17 -26.32 16 12 C -0.23 -11.86 8.06 84.03 0.68 -11.18 16 13 H 0.04 2.27 7.04 -2.91 -0.02 2.25 16 14 C -0.02 -1.06 4.95 84.86 0.42 -0.64 16 15 N -0.90 -48.03 11.26 21.65 0.24 -47.79 16 16 Si 0.92 44.05 29.61 68.60 2.03 46.08 16 17 H -0.28 -13.24 7.11 99.48 0.71 -12.54 16 18 H -0.29 -13.75 7.11 99.48 0.71 -13.04 16 19 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 20 C 0.18 7.56 5.40 85.63 0.46 8.02 16 21 C -0.09 -3.34 5.46 -19.86 -0.11 -3.45 16 22 C -0.13 -4.98 9.70 22.27 0.22 -4.77 16 23 C -0.13 -4.34 10.05 22.27 0.22 -4.12 16 24 C -0.14 -3.83 10.05 22.27 0.22 -3.60 16 25 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 26 C -0.13 -4.00 9.70 22.27 0.22 -3.78 16 27 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.07 1.84 8.13 -2.39 -0.02 1.82 16 31 H 0.06 1.64 8.13 -2.39 -0.02 1.62 16 32 H 0.11 5.05 7.51 -2.38 -0.02 5.04 16 33 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 34 H 0.06 2.24 8.10 -2.38 -0.02 2.22 16 35 H 0.04 1.80 7.45 -2.39 -0.02 1.78 16 36 H 0.04 1.58 8.14 -2.38 -0.02 1.57 16 37 H 0.03 1.22 7.18 -2.38 -0.02 1.21 16 38 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.25 13.18 8.31 -92.71 -0.77 12.41 16 40 H 0.04 1.72 7.83 -2.39 -0.02 1.70 16 41 H 0.07 3.59 5.41 -2.39 -0.01 3.58 16 42 H 0.09 3.93 8.06 -2.91 -0.02 3.91 16 43 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.14 2.92 8.06 -2.91 -0.02 2.89 16 46 H 0.13 3.53 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -60.63 381.20 7.24 -53.39 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: 0.93 Total: 24.18 kcal Atomic # 6 Polarization: -18.81 SS G_CDS: 5.38 Total: -13.43 kcal Atomic # 7 Polarization: -73.18 SS G_CDS: -0.92 Total: -74.11 kcal Atomic # 8 Polarization: -35.93 SS G_CDS: -0.18 Total: -36.11 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -60.63 7.24 -53.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258500134.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.382 kcal (2) G-P(sol) polarization free energy of solvation -60.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds