Wall clock time and date at job start Tue Mar 31 2020 10:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.45202 * 109.46731 * 2 1 4 4 C 1.34229 * 116.99624 * 179.97438 * 3 2 1 5 5 O 1.20830 * 120.00449 * 0.02562 * 4 3 2 6 6 C 1.50697 * 120.00173 * 179.97438 * 4 3 2 7 7 C 1.52995 * 109.47570 * 180.02562 * 6 4 3 8 8 C 1.53000 * 109.47510 * 180.02562 * 7 6 4 9 9 H 1.09000 * 109.46974 * 55.95577 * 8 7 6 10 10 C 1.52999 * 109.47583 * 175.96101 * 8 7 6 11 11 N 1.46503 * 109.46927 * 295.95675 * 8 7 6 12 12 C 1.36937 * 120.00335 * 303.59992 * 11 8 7 13 13 H 1.07998 * 119.99730 * 41.73422 * 12 11 8 14 14 C 1.38806 * 120.00312 * 221.73324 * 12 11 8 15 15 N 1.31616 * 120.00427 * 212.60619 * 14 12 11 16 16 Si 1.86804 * 119.99792 * 32.60150 * 14 12 11 17 17 H 1.48500 * 109.46896 * 88.64230 * 16 14 12 18 18 H 1.48504 * 109.47149 * 208.63883 * 16 14 12 19 19 H 1.48498 * 109.47082 * 328.64112 * 16 14 12 20 20 C 1.46500 * 119.99739 * 123.59792 * 11 8 7 21 21 C 1.50701 * 109.47313 * 270.80563 * 20 11 8 22 22 C 1.38235 * 120.00489 * 269.73115 * 21 20 11 23 23 C 1.38226 * 120.00385 * 179.76578 * 22 21 20 24 24 C 1.38237 * 120.00072 * 0.50115 * 23 22 21 25 25 C 1.38240 * 119.99694 * 359.75124 * 24 23 22 26 26 C 1.38237 * 120.00036 * 359.97438 * 25 24 23 27 27 H 1.09002 * 109.46861 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47228 * 300.00099 * 1 2 3 29 29 H 1.09003 * 109.46819 * 60.00584 * 1 2 3 30 30 H 1.08996 * 109.47228 * 239.99900 * 2 1 3 31 31 H 1.09003 * 109.46819 * 119.99416 * 2 1 3 32 32 H 1.09004 * 109.47357 * 60.00175 * 6 4 3 33 33 H 1.08998 * 109.47388 * 300.00297 * 6 4 3 34 34 H 1.09002 * 109.47056 * 60.00383 * 7 6 4 35 35 H 1.09002 * 109.47313 * 300.00130 * 7 6 4 36 36 H 1.09006 * 109.46700 * 304.24343 * 10 8 7 37 37 H 1.09000 * 109.47042 * 64.23423 * 10 8 7 38 38 H 1.08992 * 109.47700 * 184.24101 * 10 8 7 39 39 H 0.96999 * 120.00350 * 180.02562 * 15 14 12 40 40 H 1.09000 * 109.47369 * 150.80724 * 20 11 8 41 41 H 1.08995 * 109.47268 * 30.80687 * 20 11 8 42 42 H 1.08006 * 119.99212 * 359.97438 * 22 21 20 43 43 H 1.08001 * 120.00262 * 180.22688 * 23 22 21 44 44 H 1.07997 * 120.00053 * 179.72474 * 24 23 22 45 45 H 1.08001 * 119.99907 * 179.97438 * 25 24 23 46 46 H 1.07994 * 119.99892 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8574 0.0001 8 6 6.0334 4.2712 0.0002 9 1 5.6405 4.8268 0.8517 10 6 7.5580 4.1926 0.1019 11 7 5.6615 4.9536 -1.2417 12 6 5.9834 4.3979 -2.4512 13 1 5.8666 3.3354 -2.6054 14 6 6.4598 5.2002 -3.4789 15 7 6.1809 4.9018 -4.7300 16 14 7.4966 6.7036 -3.0860 17 1 8.9283 6.3144 -3.0217 18 1 7.3087 7.7255 -4.1470 19 1 7.0772 7.2659 -1.7772 20 6 4.9451 6.2304 -1.1897 21 6 3.4605 5.9728 -1.1626 22 6 2.7509 5.8934 -2.3462 23 6 1.3901 5.6523 -2.3215 24 6 0.7368 5.5008 -1.1127 25 6 1.4455 5.5854 0.0713 26 6 2.8074 5.8209 0.0463 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 1.8934 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.5844 3.4701 0.8895 33 1 3.5852 3.4691 -0.8904 34 1 5.7846 2.3250 -0.8897 35 1 5.7845 2.3256 0.8903 36 1 7.8339 3.6195 0.9871 37 1 7.9566 3.7031 -0.7866 38 1 7.9695 5.1990 0.1779 39 1 6.5141 5.4622 -5.4482 40 1 5.1949 6.8233 -2.0696 41 1 5.2360 6.7739 -0.2908 42 1 3.2606 6.0164 -3.2905 43 1 0.8364 5.5866 -3.2464 44 1 -0.3272 5.3169 -1.0932 45 1 0.9350 5.4675 1.0157 46 1 3.3609 5.8874 0.9712 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001258500135.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:05:25 Heat of formation + Delta-G solvation = -65.132940 kcal Electronic energy + Delta-G solvation = -26528.092892 eV Core-core repulsion = 22996.574936 eV Total energy + Delta-G solvation = -3531.517956 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.49633 -40.14342 -38.41126 -37.59052 -34.80929 -33.57111 -32.80366 -31.93698 -31.48974 -30.39194 -27.23565 -26.25541 -24.99558 -23.71632 -23.17546 -22.08720 -21.73193 -21.00051 -18.79606 -18.34865 -17.76680 -17.28049 -17.13383 -16.84642 -16.58448 -15.89847 -15.65202 -15.38075 -14.91467 -14.78787 -14.44940 -14.17575 -14.09852 -13.96474 -13.83310 -13.58919 -13.39804 -13.03965 -12.97895 -12.85080 -12.67571 -12.47511 -12.40843 -12.26971 -12.08112 -11.89017 -11.73104 -11.63963 -11.50831 -11.44225 -11.34060 -11.26773 -10.46665 -9.55369 -9.37185 -8.56198 -8.17540 -5.45113 0.70665 0.75493 1.21679 1.39409 1.48814 1.54739 1.78163 2.51107 2.96546 3.22376 3.57875 3.81249 3.99471 4.04158 4.10723 4.18156 4.24936 4.31116 4.33313 4.38409 4.48774 4.55954 4.60340 4.66595 4.78094 4.84510 4.87026 4.92898 4.95432 5.01317 5.06925 5.11415 5.13973 5.20681 5.30676 5.37720 5.40884 5.47732 5.52037 5.63904 5.80309 5.85033 6.01926 6.07462 6.35872 6.40348 6.78219 7.13470 7.76075 8.20891 9.02662 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012916 B = 0.005837 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.373045 B = 4796.126854 C = 5736.102637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.050 3.950 3 O -0.360 6.360 4 C 0.463 3.537 5 O -0.546 6.546 6 C -0.094 4.094 7 C -0.103 4.103 8 C 0.167 3.833 9 H 0.090 0.910 10 C -0.152 4.152 11 N -0.593 5.593 12 C -0.239 4.239 13 H 0.030 0.970 14 C 0.002 3.998 15 N -0.930 5.930 16 Si 0.904 3.096 17 H -0.299 1.299 18 H -0.309 1.309 19 H -0.234 1.234 20 C 0.176 3.824 21 C -0.093 4.093 22 C -0.122 4.122 23 C -0.134 4.134 24 C -0.129 4.129 25 C -0.118 4.118 26 C -0.116 4.116 27 H 0.101 0.899 28 H 0.075 0.925 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.124 0.876 33 H 0.097 0.903 34 H 0.035 0.965 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.032 0.968 38 H 0.047 0.953 39 H 0.258 0.742 40 H 0.034 0.966 41 H 0.073 0.927 42 H 0.083 0.917 43 H 0.118 0.882 44 H 0.139 0.861 45 H 0.146 0.854 46 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.140 -1.021 14.740 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.024 4.024 3 O -0.277 6.277 4 C 0.308 3.692 5 O -0.436 6.436 6 C -0.131 4.131 7 C -0.142 4.142 8 C 0.062 3.938 9 H 0.108 0.892 10 C -0.211 4.211 11 N -0.314 5.314 12 C -0.368 4.368 13 H 0.048 0.952 14 C -0.196 4.196 15 N -0.573 5.573 16 Si 0.731 3.269 17 H -0.227 1.227 18 H -0.237 1.237 19 H -0.157 1.157 20 C 0.051 3.949 21 C -0.095 4.095 22 C -0.141 4.141 23 C -0.153 4.153 24 C -0.147 4.147 25 C -0.136 4.136 26 C -0.134 4.134 27 H 0.119 0.881 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.142 0.858 33 H 0.115 0.885 34 H 0.053 0.947 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.051 0.949 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.091 0.909 42 H 0.102 0.898 43 H 0.136 0.864 44 H 0.157 0.843 45 H 0.164 0.836 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -11.917 -1.292 14.591 18.883 hybrid contribution 1.101 0.205 -1.324 1.734 sum -10.816 -1.087 13.267 17.152 Atomic orbital electron populations 1.21802 0.90041 1.04349 1.03748 1.23274 0.97420 0.79613 1.02070 1.86547 1.24116 1.33402 1.83671 1.24442 0.80522 0.93526 0.70677 1.90607 1.61167 1.44510 1.47349 1.21459 0.96550 0.88971 1.06135 1.21672 0.92315 0.98967 1.01286 1.20659 0.93270 0.91460 0.88391 0.89185 1.22094 0.97278 1.00915 1.00824 1.44205 1.62385 1.23250 1.01605 1.18173 1.37459 0.92692 0.88512 0.95228 1.25982 0.98994 1.00137 0.94513 1.70164 1.44760 1.41956 1.00381 0.86455 0.80480 0.80928 0.78992 1.22733 1.23730 1.15677 1.20299 0.87070 0.87698 0.99790 1.20753 0.96939 0.98488 0.93361 1.21017 0.94736 1.00659 0.97689 1.21237 0.94099 1.00911 0.99005 1.21282 1.00595 1.00724 0.92089 1.21357 0.93993 0.99467 0.98756 1.21172 0.94935 1.00404 0.96925 0.88082 0.90628 0.91817 0.92638 0.90990 0.85846 0.88479 0.94659 0.90806 0.91043 0.94897 0.93431 0.93269 0.94778 0.90879 0.89850 0.86393 0.84346 0.83582 0.84466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.30 10.29 71.98 0.74 -1.56 16 2 C 0.05 1.20 6.19 71.98 0.45 1.64 16 3 O -0.36 -10.89 10.22 -51.41 -0.53 -11.41 16 4 C 0.46 16.02 7.96 71.23 0.57 16.59 16 5 O -0.55 -21.77 15.73 21.95 0.35 -21.43 16 6 C -0.09 -3.06 4.65 29.85 0.14 -2.92 16 7 C -0.10 -3.63 3.84 30.59 0.12 -3.52 16 8 C 0.17 5.73 2.76 44.99 0.12 5.85 16 9 H 0.09 2.46 7.83 -2.39 -0.02 2.44 16 10 C -0.15 -5.16 9.28 71.98 0.67 -4.50 16 11 N -0.59 -24.74 1.31 -682.35 -0.89 -25.63 16 12 C -0.24 -12.59 8.47 84.03 0.71 -11.88 16 13 H 0.03 1.83 6.86 -2.91 -0.02 1.81 16 14 C 0.00 0.10 5.03 84.86 0.43 0.53 16 15 N -0.93 -56.68 13.97 21.65 0.30 -56.38 16 16 Si 0.90 43.66 26.56 68.60 1.82 45.49 16 17 H -0.30 -14.81 7.11 99.48 0.71 -14.11 16 18 H -0.31 -15.43 7.11 99.48 0.71 -14.72 16 19 H -0.23 -10.06 5.86 99.48 0.58 -9.48 16 20 C 0.18 6.76 4.17 85.63 0.36 7.11 16 21 C -0.09 -3.23 4.06 -19.87 -0.08 -3.31 16 22 C -0.12 -4.68 9.70 22.27 0.22 -4.47 16 23 C -0.13 -4.28 10.05 22.27 0.22 -4.06 16 24 C -0.13 -3.30 10.05 22.27 0.22 -3.08 16 25 C -0.12 -2.78 10.05 22.27 0.22 -2.55 16 26 C -0.12 -3.10 7.43 22.27 0.17 -2.93 16 27 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.06 1.45 8.13 -2.39 -0.02 1.43 16 31 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 32 H 0.12 3.16 7.26 -2.39 -0.02 3.14 16 33 H 0.10 3.75 5.90 -2.39 -0.01 3.73 16 34 H 0.03 1.55 6.70 -2.39 -0.02 1.53 16 35 H 0.07 2.31 8.10 -2.39 -0.02 2.29 16 36 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 37 H 0.03 1.31 7.61 -2.39 -0.02 1.30 16 38 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 40 H 0.03 1.49 4.77 -2.39 -0.01 1.48 16 41 H 0.07 2.37 7.91 -2.39 -0.02 2.35 16 42 H 0.08 3.81 8.06 -2.91 -0.02 3.79 16 43 H 0.12 3.45 8.06 -2.91 -0.02 3.43 16 44 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 45 H 0.15 2.45 8.06 -2.91 -0.02 2.43 16 46 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -68.37 370.33 7.14 -61.23 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: 0.82 Total: 21.17 kcal Atomic # 6 Polarization: -18.31 SS G_CDS: 5.27 Total: -13.04 kcal Atomic # 7 Polarization: -81.42 SS G_CDS: -0.59 Total: -82.01 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.18 Total: -32.84 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 1.82 Total: 45.49 kcal Total: -68.37 7.14 -61.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001258500135.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.901 kcal (2) G-P(sol) polarization free energy of solvation -68.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds