Wall clock time and date at job start Tue Mar 31 2020 10:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35894 * 117.00088 * 2 1 4 4 C 1.38754 * 120.05702 * 359.97290 * 3 2 1 5 5 C 1.38123 * 119.94297 * 180.02562 * 4 3 2 6 6 C 1.38285 * 120.05608 * 0.02562 * 5 4 3 7 7 C 1.38238 * 120.11234 * 359.95320 * 6 5 4 8 8 C 1.38166 * 120.05789 * 0.04621 * 7 6 5 9 9 C 1.50698 * 120.03083 * 180.25021 * 8 7 6 10 10 N 1.46901 * 112.85100 * 103.76036 * 9 8 7 11 11 C 1.46899 * 111.00132 * 301.33455 * 10 9 8 12 12 C 1.53002 * 109.47053 * 180.45035 * 11 10 9 13 13 O 1.42895 * 109.47323 * 64.99717 * 12 11 10 14 14 C 1.42901 * 113.99871 * 179.97438 * 13 12 11 15 15 C 1.50705 * 109.46964 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00173 * 359.97438 * 15 14 13 17 17 C 1.37875 * 119.99590 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00370 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99861 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.47238 * 89.99780 * 19 17 15 21 21 H 1.48491 * 109.47267 * 209.99797 * 19 17 15 22 22 H 1.48500 * 109.47062 * 329.99940 * 19 17 15 23 23 C 1.53785 * 113.61296 * 332.45980 * 9 8 7 24 24 C 1.53784 * 87.08026 * 220.01493 * 23 9 8 25 25 C 1.53779 * 113.61876 * 234.96304 * 9 8 7 26 26 H 1.08998 * 109.46842 * 60.00541 * 1 2 3 27 27 H 1.09001 * 109.47030 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47151 * 300.00169 * 1 2 3 29 29 H 1.08002 * 120.02389 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.96775 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.94156 * 179.97438 * 6 5 4 32 32 H 1.08004 * 119.97362 * 180.02562 * 7 6 5 33 33 H 1.00899 * 111.00303 * 177.36906 * 10 9 8 34 34 H 1.09005 * 109.46611 * 300.44161 * 11 10 9 35 35 H 1.08994 * 109.47453 * 60.44307 * 11 10 9 36 36 H 1.09010 * 109.46990 * 184.99750 * 12 11 10 37 37 H 1.08994 * 109.46840 * 304.99082 * 12 11 10 38 38 H 1.08997 * 109.47165 * 299.99648 * 14 13 12 39 39 H 1.09002 * 109.47082 * 59.99730 * 14 13 12 40 40 H 0.97000 * 119.99519 * 180.02562 * 18 17 15 41 41 H 1.08993 * 113.61320 * 334.56236 * 23 9 8 42 42 H 1.09004 * 113.61407 * 105.46813 * 23 9 8 43 43 H 1.08994 * 113.61465 * 270.88562 * 24 23 9 44 44 H 1.08999 * 113.61094 * 139.97845 * 24 23 9 45 45 H 1.09004 * 113.61083 * 254.53042 * 25 9 8 46 46 H 1.08995 * 113.61138 * 25.42647 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3753 -0.0006 5 6 1.9210 3.6047 -0.0011 6 6 3.3020 3.6756 -0.0016 7 6 4.0560 2.5170 -0.0006 8 6 3.4312 1.2847 -0.0001 9 6 4.2537 0.0220 0.0067 10 7 4.2896 -0.6283 1.3235 11 6 4.8396 0.2758 2.3423 12 6 4.8715 -0.4390 3.6947 13 8 5.7836 -1.5372 3.6317 14 6 5.8892 -2.2757 4.8506 15 6 6.8719 -3.4040 4.6707 16 1 7.3660 -3.5435 3.7206 17 6 7.1393 -4.2589 5.7189 18 7 6.5373 -4.0893 6.8758 19 14 8.3569 -5.6579 5.4958 20 1 9.7197 -5.1902 5.8551 21 1 7.9748 -6.7916 6.3754 22 1 8.3441 -6.1041 4.0795 23 6 5.6396 0.1861 -0.6393 24 6 5.4274 -1.2043 -1.2612 25 6 3.9171 -0.9387 -1.1458 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 0.2129 2.3203 -0.0006 30 1 1.3341 4.5113 -0.0020 31 1 3.7924 4.6379 -0.0024 32 1 5.1345 2.5750 -0.0006 33 1 4.8110 -1.4914 1.2864 34 1 5.8518 0.5669 2.0614 35 1 4.2131 1.1646 2.4158 36 1 5.1957 0.2587 4.4670 37 1 3.8743 -0.8082 3.9341 38 1 6.2348 -1.6159 5.6464 39 1 4.9132 -2.6829 5.1144 40 1 6.7258 -4.6906 7.6133 41 1 5.6865 0.9903 -1.3736 42 1 6.4561 0.2219 0.0819 43 1 5.7763 -2.0223 -0.6310 44 1 5.7799 -1.2809 -2.2898 45 1 3.3430 -1.8111 -0.8335 46 1 3.4931 -0.4421 -2.0185 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326248934.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:18 Heat of formation + Delta-G solvation = -37.674088 kcal Electronic energy + Delta-G solvation = -25477.867452 eV Core-core repulsion = 21947.540201 eV Total energy + Delta-G solvation = -3530.327251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.79456 -38.96250 -37.22434 -36.74037 -33.59276 -32.50940 -31.26868 -30.20132 -28.31509 -27.39744 -26.60987 -25.62708 -24.48436 -22.32995 -22.03185 -21.78840 -21.14723 -18.86241 -18.00772 -16.48671 -16.38406 -16.08273 -15.80846 -15.57712 -15.40569 -15.06064 -14.64538 -14.47705 -14.34885 -13.85051 -13.75319 -13.26148 -13.16996 -12.71850 -12.66036 -12.28187 -12.07436 -11.81093 -11.68821 -11.47638 -11.31459 -11.26155 -11.16170 -10.81978 -10.79160 -10.61604 -10.47774 -10.29745 -10.18812 -9.95805 -9.07683 -8.95572 -8.78604 -8.20417 -8.13208 -8.00926 -6.08336 -4.09947 1.21999 1.39246 3.28707 3.31681 3.36638 3.41930 3.65766 4.32424 4.37289 4.55876 4.59930 4.79705 4.80099 4.90381 4.96931 5.00679 5.05868 5.07053 5.16731 5.28099 5.35906 5.39734 5.44703 5.58102 5.63727 5.72536 5.77254 5.83285 5.91465 6.00316 6.11052 6.15261 6.20509 6.25806 6.31323 6.32665 6.42213 6.44288 6.48685 6.71274 7.15698 7.38197 7.39469 7.48054 7.78427 7.81741 8.18599 8.61726 9.03424 9.54790 11.03216 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018901 B = 0.003157 C = 0.003087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.078117 B = 8867.880127 C = 9067.537540 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.293 6.293 3 C 0.151 3.849 4 C -0.216 4.216 5 C -0.085 4.085 6 C -0.162 4.162 7 C -0.077 4.077 8 C -0.090 4.090 9 C 0.147 3.853 10 N -0.651 5.651 11 C 0.069 3.931 12 C 0.063 3.937 13 O -0.399 6.399 14 C 0.197 3.803 15 C -0.513 4.513 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.899 5.899 19 Si 0.907 3.093 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 C -0.174 4.174 24 C -0.145 4.145 25 C -0.116 4.116 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.052 0.948 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.358 0.642 34 H 0.034 0.966 35 H 0.073 0.927 36 H 0.039 0.961 37 H 0.045 0.955 38 H 0.003 0.997 39 H 0.006 0.994 40 H 0.264 0.736 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.066 0.934 45 H 0.078 0.922 46 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.819 14.320 -17.287 24.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.205 6.205 3 C 0.105 3.895 4 C -0.235 4.235 5 C -0.103 4.103 6 C -0.180 4.180 7 C -0.096 4.096 8 C -0.091 4.091 9 C 0.055 3.945 10 N -0.283 5.283 11 C -0.060 4.060 12 C -0.015 4.015 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.552 4.552 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 C -0.213 4.213 24 C -0.183 4.183 25 C -0.154 4.154 26 H 0.068 0.932 27 H 0.117 0.883 28 H 0.071 0.929 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.180 0.820 34 H 0.052 0.948 35 H 0.092 0.908 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.023 0.977 40 H 0.073 0.927 41 H 0.100 0.900 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.303 14.104 -17.089 24.874 hybrid contribution 1.072 -0.386 0.193 1.155 sum -10.232 13.718 -16.896 24.049 Atomic orbital electron populations 1.23038 0.79258 1.03866 1.00760 1.86255 1.20327 1.26080 1.87831 1.18809 0.91598 0.84308 0.94780 1.21224 0.99891 0.92483 1.09887 1.20880 0.94656 0.96823 0.97943 1.20979 0.93894 0.98199 1.04962 1.20908 0.99971 0.91024 0.97659 1.18933 0.90401 0.94601 1.05160 1.20640 0.92667 0.91174 0.90059 1.60369 1.58430 1.07060 1.02417 1.21901 0.97527 0.95333 0.91277 1.22290 0.93990 0.90066 0.95138 1.87780 1.62407 1.42792 1.38897 1.20163 0.96336 0.90152 0.81037 1.21053 1.24082 1.11462 0.98558 0.91636 1.24948 0.96658 0.98046 0.94872 1.69969 1.42808 1.38550 1.02454 0.86350 0.80865 0.81141 0.78205 1.20526 1.21096 1.19627 1.23736 0.98809 0.98030 1.00735 1.22858 0.96960 0.97364 1.01069 1.22915 0.96039 0.99496 0.96902 0.93204 0.88314 0.92892 0.85713 0.86180 0.86129 0.85562 0.82048 0.94763 0.90830 0.94299 0.93662 0.97901 0.97659 0.92691 0.90024 0.91106 0.89723 0.91545 0.90330 0.90311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.22 16 2 O -0.29 -3.68 9.02 -19.41 -0.18 -3.86 16 3 C 0.15 1.90 6.53 -39.22 -0.26 1.64 16 4 C -0.22 -2.28 9.04 -39.43 -0.36 -2.64 16 5 C -0.08 -0.82 10.04 -39.61 -0.40 -1.22 16 6 C -0.16 -1.62 10.04 -39.56 -0.40 -2.01 16 7 C -0.08 -0.87 8.69 -39.61 -0.34 -1.21 16 8 C -0.09 -1.15 3.89 -104.47 -0.41 -1.55 16 9 C 0.15 1.95 0.62 -131.94 -0.08 1.87 16 10 N -0.65 -10.38 6.41 -100.31 -0.64 -11.03 16 11 C 0.07 1.12 5.68 -3.82 -0.02 1.10 16 12 C 0.06 1.24 6.28 37.16 0.23 1.47 16 13 O -0.40 -9.70 9.84 -35.23 -0.35 -10.05 16 14 C 0.20 5.52 5.69 36.01 0.20 5.72 16 15 C -0.51 -15.26 9.43 -34.44 -0.32 -15.59 16 16 H 0.07 1.92 7.81 -52.49 -0.41 1.51 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.23 13.29 55.43 0.74 -26.50 16 19 Si 0.91 22.04 29.54 -169.99 -5.02 17.02 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.47 7.11 56.52 0.40 -6.06 16 23 C -0.17 -2.11 6.16 -25.91 -0.16 -2.27 16 24 C -0.15 -1.73 7.73 -25.92 -0.20 -1.93 16 25 C -0.12 -1.43 6.20 -25.92 -0.16 -1.59 16 26 H 0.05 0.34 7.66 -51.93 -0.40 -0.05 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.42 7.66 -51.93 -0.40 0.02 16 29 H 0.13 1.06 6.30 -52.49 -0.33 0.73 16 30 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 31 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 32 H 0.13 1.30 6.97 -52.48 -0.37 0.93 16 33 H 0.36 6.26 7.43 -39.29 -0.29 5.96 16 34 H 0.03 0.56 7.05 -51.93 -0.37 0.19 16 35 H 0.07 1.13 7.04 -51.93 -0.37 0.77 16 36 H 0.04 0.73 8.14 -51.92 -0.42 0.31 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 39 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 40 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 41 H 0.08 0.88 7.39 -51.93 -0.38 0.50 16 42 H 0.07 0.94 7.14 -51.93 -0.37 0.57 16 43 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.08 0.91 8.09 -51.93 -0.42 0.49 16 LS Contribution 370.39 15.07 5.58 5.58 Total: -1.00 -32.11 370.39 -9.08 -41.19 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -7.44 Total: 3.10 kcal Atomic # 6 Polarization: -13.69 SS G_CDS: -1.78 Total: -15.46 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.09 Total: -37.52 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: -0.52 Total: -13.91 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.11 -9.08 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326248934.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.517 kcal (2) G-P(sol) polarization free energy of solvation -32.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds