Wall clock time and date at job start Tue Mar 31 2020 09:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42892 * 109.47037 * 2 1 4 4 C 1.42905 * 114.00014 * 179.97438 * 3 2 1 5 5 C 1.50699 * 109.47422 * 179.97438 * 4 3 2 6 6 C 1.38285 * 119.92557 * 269.71866 * 5 4 3 7 7 C 1.38110 * 120.06985 * 179.76277 * 6 5 4 8 8 C 1.38872 * 119.92819 * 0.51210 * 7 6 5 9 9 N 1.39929 * 120.07161 * 179.71754 * 8 7 6 10 10 C 1.34773 * 119.99998 * 213.31072 * 9 8 7 11 11 O 1.21281 * 120.00235 * 5.28070 * 10 9 8 12 12 C 1.50702 * 119.99673 * 185.27553 * 10 9 8 13 13 C 1.53001 * 109.47136 * 180.02562 * 12 10 9 14 14 C 1.52998 * 109.47471 * 180.02562 * 13 12 10 15 15 C 1.52997 * 109.47097 * 180.02562 * 14 13 12 16 16 C 1.50703 * 109.46775 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99936 * 359.97438 * 16 15 14 18 18 C 1.37877 * 119.99814 * 179.97438 * 16 15 14 19 19 N 1.31512 * 120.00448 * 359.97438 * 18 16 15 20 20 Si 1.86804 * 119.99947 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47209 * 89.99681 * 20 18 16 22 22 H 1.48501 * 109.46969 * 209.99622 * 20 18 16 23 23 H 1.48503 * 109.46964 * 329.99868 * 20 18 16 24 24 C 1.38874 * 119.85921 * 359.74525 * 8 7 6 25 25 C 1.38110 * 119.92751 * 359.97438 * 24 8 7 26 26 H 1.09003 * 109.47228 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47333 * 300.00550 * 1 2 3 28 28 H 1.09006 * 109.46721 * 60.00630 * 1 2 3 29 29 H 1.09000 * 109.47333 * 239.99450 * 2 1 3 30 30 H 1.09006 * 109.46721 * 119.99370 * 2 1 3 31 31 H 1.08993 * 109.47464 * 59.99261 * 4 3 2 32 32 H 1.09001 * 109.46973 * 299.99509 * 4 3 2 33 33 H 1.08002 * 119.96117 * 0.02830 * 6 5 4 34 34 H 1.07996 * 120.03700 * 180.25899 * 7 6 5 35 35 H 0.97002 * 119.99259 * 33.31868 * 9 8 7 36 36 H 1.09000 * 109.47166 * 300.00117 * 12 10 9 37 37 H 1.09000 * 109.47209 * 60.00345 * 12 10 9 38 38 H 1.09009 * 109.47139 * 300.00557 * 13 12 10 39 39 H 1.09000 * 109.47033 * 59.99939 * 13 12 10 40 40 H 1.09005 * 109.46660 * 300.00261 * 14 13 12 41 41 H 1.09000 * 109.47293 * 59.99791 * 14 13 12 42 42 H 1.09000 * 109.46832 * 299.99348 * 15 14 13 43 43 H 1.08997 * 109.47752 * 60.00038 * 15 14 13 44 44 H 0.96999 * 120.00363 * 180.02562 * 19 18 16 45 45 H 1.08003 * 120.03616 * 179.97438 * 24 8 7 46 46 H 1.08003 * 119.96511 * 179.97438 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 -0.0001 6 6 4.0037 3.5804 -1.1989 7 6 4.3551 4.9160 -1.2030 8 6 4.5339 5.5892 -0.0016 9 7 4.8957 6.9409 -0.0023 10 6 5.6882 7.4268 0.9735 11 8 6.1657 6.6757 1.7974 12 6 5.9811 8.9036 1.0408 13 6 6.8983 9.1878 2.2319 14 6 7.1952 10.6872 2.3007 15 6 8.1129 10.9712 3.4915 16 6 8.4048 12.4482 3.5595 17 1 7.9787 13.1171 2.8265 18 6 9.2158 12.9453 4.5576 19 7 9.7343 12.1308 5.4505 20 14 9.5782 14.7759 4.6415 21 1 8.5536 15.4454 5.4825 22 1 10.9222 14.9877 5.2365 23 1 9.5468 15.3500 3.2723 24 6 4.3534 4.9178 1.2006 25 6 3.9963 3.5836 1.1979 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 1.8934 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8341 0.9763 -0.8890 32 1 3.8333 0.9767 0.8909 33 1 3.8684 3.0552 -2.1329 34 1 4.4947 5.4354 -2.1396 35 1 4.5759 7.5281 -0.7051 36 1 6.4730 9.2187 0.1206 37 1 5.0479 9.4540 1.1609 38 1 6.4068 8.8725 3.1524 39 1 7.8314 8.6375 2.1114 40 1 7.6865 11.0028 1.3803 41 1 6.2619 11.2372 2.4214 42 1 7.6219 10.6556 4.4120 43 1 9.0461 10.4213 3.3704 44 1 10.3045 12.4806 6.1528 45 1 4.4921 5.4384 2.1367 46 1 3.8562 3.0608 2.1325 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001326740965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:50 Heat of formation + Delta-G solvation = -106.398907 kcal Electronic energy + Delta-G solvation = -23125.487776 eV Core-core repulsion = 19592.180393 eV Total energy + Delta-G solvation = -3533.307382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62190 -39.97275 -38.64696 -36.70319 -35.93412 -34.63167 -32.85714 -31.95309 -31.71435 -30.71385 -27.78305 -26.35662 -24.37489 -23.92935 -23.64549 -22.41090 -21.68521 -21.23053 -18.82048 -18.40102 -17.97682 -17.61821 -17.16509 -16.97313 -16.76795 -16.50649 -15.93836 -15.53588 -15.32523 -14.94216 -14.55273 -14.45027 -14.26489 -14.08221 -13.87138 -13.68069 -13.59657 -13.31654 -13.22531 -12.82221 -12.51064 -12.37217 -12.34341 -12.17061 -12.14592 -12.07920 -12.02005 -11.41740 -11.35932 -11.31692 -11.15180 -10.79922 -10.55902 -10.54784 -9.91009 -9.11231 -8.18510 -6.30760 0.14234 0.42708 1.40649 1.42824 1.53897 1.54937 2.02670 2.42202 2.57840 3.12994 3.14346 3.67436 3.87180 3.90482 3.99717 4.06956 4.13838 4.17640 4.27217 4.33712 4.39220 4.49530 4.52383 4.57380 4.67338 4.70010 4.70688 4.82909 4.87048 4.88081 5.04161 5.05759 5.18166 5.22892 5.28312 5.30902 5.34953 5.37242 5.49686 5.57409 5.60864 5.78346 5.88350 6.01722 6.25395 6.27178 6.41291 6.87854 7.12395 7.39031 8.93639 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.043332 B = 0.001695 C = 0.001664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.021673 B =16515.675418 C =16819.808802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.049 3.951 3 O -0.408 6.408 4 C 0.107 3.893 5 C -0.119 4.119 6 C -0.079 4.079 7 C -0.145 4.145 8 C 0.140 3.860 9 N -0.663 5.663 10 C 0.511 3.489 11 O -0.564 6.564 12 C -0.125 4.125 13 C -0.097 4.097 14 C -0.096 4.096 15 C 0.017 3.983 16 C -0.543 4.543 17 H 0.067 0.933 18 C -0.006 4.006 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.259 1.259 24 C -0.150 4.150 25 C -0.090 4.090 26 H 0.090 0.910 27 H 0.053 0.947 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.153 0.847 34 H 0.157 0.843 35 H 0.430 0.570 36 H 0.126 0.874 37 H 0.124 0.876 38 H 0.043 0.957 39 H 0.044 0.956 40 H 0.062 0.938 41 H 0.062 0.938 42 H -0.016 1.016 43 H -0.015 1.015 44 H 0.262 0.738 45 H 0.111 0.889 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.379 -22.593 -19.192 34.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.328 6.328 4 C 0.031 3.969 5 C -0.120 4.120 6 C -0.098 4.098 7 C -0.165 4.165 8 C 0.046 3.954 9 N -0.310 5.310 10 C 0.301 3.699 11 O -0.441 6.441 12 C -0.164 4.164 13 C -0.135 4.135 14 C -0.133 4.133 15 C -0.020 4.020 16 C -0.581 4.581 17 H 0.085 0.915 18 C -0.203 4.203 19 N -0.578 5.578 20 Si 0.793 3.207 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.183 1.183 24 C -0.170 4.170 25 C -0.109 4.109 26 H 0.109 0.891 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.095 0.905 32 H 0.080 0.920 33 H 0.171 0.829 34 H 0.175 0.825 35 H 0.270 0.730 36 H 0.144 0.856 37 H 0.142 0.858 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.002 0.998 43 H 0.003 0.997 44 H 0.071 0.929 45 H 0.129 0.871 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -18.046 -22.896 -18.452 34.501 hybrid contribution 0.633 0.819 0.673 1.235 sum -17.413 -22.077 -17.778 33.267 Atomic orbital electron populations 1.21774 0.93265 1.03286 1.02507 1.22669 0.96105 0.82865 1.01088 1.87953 1.21191 1.28079 1.95619 1.21308 0.81400 0.92106 1.02054 1.19789 1.02680 0.96152 0.93404 1.21165 0.96707 0.93671 0.98227 1.21180 1.03601 0.94973 0.96758 1.18038 0.98085 0.84829 0.94448 1.43536 1.49533 1.08494 1.29440 1.21489 0.76536 0.92072 0.79795 1.90721 1.51388 1.60973 1.41020 1.21700 1.03261 0.89753 1.01714 1.21263 0.98669 0.96299 0.97311 1.21447 0.99300 0.94140 0.98448 1.19067 0.93889 0.95295 0.93720 1.21769 1.29424 0.94403 1.12461 0.91514 1.26084 0.95692 1.03314 0.95237 1.70131 1.34050 1.37116 1.16511 0.85389 0.77416 0.78964 0.78908 1.19755 1.20970 1.18274 1.21145 1.02235 0.95957 0.97701 1.21046 0.97652 0.93542 0.98623 0.89147 0.92801 0.92276 0.91976 0.92704 0.90547 0.91956 0.82932 0.82490 0.72993 0.85624 0.85801 0.93827 0.93742 0.91891 0.91967 0.99753 0.99687 0.92891 0.87104 0.85361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 10.28 71.98 0.74 -0.76 16 2 C 0.05 0.56 6.66 71.98 0.48 1.04 16 3 O -0.41 -7.20 10.33 -148.98 -1.54 -8.74 16 4 C 0.11 1.60 6.06 71.24 0.43 2.03 16 5 C -0.12 -2.27 5.51 -19.84 -0.11 -2.38 16 6 C -0.08 -1.27 9.69 22.25 0.22 -1.06 16 7 C -0.15 -2.41 9.96 22.39 0.22 -2.18 16 8 C 0.14 3.14 6.28 38.15 0.24 3.38 16 9 N -0.66 -12.88 5.34 -303.51 -1.62 -14.50 16 10 C 0.51 13.63 7.57 87.66 0.66 14.30 16 11 O -0.56 -20.71 13.67 -3.03 -0.04 -20.75 16 12 C -0.12 -2.91 5.70 29.85 0.17 -2.74 16 13 C -0.10 -3.44 4.50 30.59 0.14 -3.30 16 14 C -0.10 -3.86 5.15 30.59 0.16 -3.70 16 15 C 0.02 0.96 4.97 29.85 0.15 1.10 16 16 C -0.54 -31.48 9.11 25.60 0.23 -31.25 16 17 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 18 C -0.01 -0.36 5.46 84.66 0.46 0.10 16 19 N -0.94 -59.16 13.29 21.45 0.28 -58.87 16 20 Si 0.97 44.82 29.54 68.60 2.03 46.85 16 21 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 24 C -0.15 -3.99 8.66 22.39 0.19 -3.80 16 25 C -0.09 -2.06 9.69 22.25 0.22 -1.85 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.08 0.82 8.08 -2.39 -0.02 0.80 16 32 H 0.06 0.84 8.08 -2.39 -0.02 0.82 16 33 H 0.15 1.57 8.06 -2.91 -0.02 1.54 16 34 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 35 H 0.43 4.64 8.82 -92.71 -0.82 3.82 16 36 H 0.13 2.20 8.14 -2.39 -0.02 2.18 16 37 H 0.12 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.04 1.70 8.10 -2.38 -0.02 1.68 16 39 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 42 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 43 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 44 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.11 3.48 6.41 -2.91 -0.02 3.46 16 46 H 0.13 2.66 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -78.88 386.13 3.84 -75.03 By element: Atomic # 1 Polarization: 11.90 SS G_CDS: 0.13 Total: 12.03 kcal Atomic # 6 Polarization: -35.66 SS G_CDS: 4.60 Total: -31.06 kcal Atomic # 7 Polarization: -72.04 SS G_CDS: -1.34 Total: -73.37 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -1.58 Total: -29.49 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -78.88 3.84 -75.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326740965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.365 kcal (2) G-P(sol) polarization free energy of solvation -78.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds