Wall clock time and date at job start Tue Mar 31 2020 08:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47260 * 2 1 4 4 C 1.46494 * 120.00514 * 271.89983 * 3 2 1 5 5 C 1.52999 * 109.47254 * 264.98755 * 4 3 2 6 6 H 1.09004 * 109.46761 * 305.94938 * 5 4 3 7 7 C 1.52996 * 109.47545 * 185.94796 * 5 4 3 8 8 O 1.42901 * 109.47320 * 65.94594 * 5 4 3 9 9 C 1.42901 * 114.00155 * 210.00271 * 8 5 4 10 10 C 1.34784 * 119.99531 * 91.89733 * 3 2 1 11 11 O 1.21277 * 119.99690 * 184.54775 * 10 3 2 12 12 C 1.50691 * 120.00084 * 4.54913 * 10 3 2 13 13 H 1.08997 * 109.47618 * 44.29153 * 12 10 3 14 14 C 1.50706 * 109.47329 * 284.28993 * 12 10 3 15 15 H 1.07995 * 119.99976 * 124.22735 * 14 12 10 16 16 C 1.37878 * 119.99799 * 304.22964 * 14 12 10 17 17 N 1.31519 * 120.00285 * 0.89897 * 16 14 12 18 18 Si 1.86797 * 120.00086 * 180.89631 * 16 14 12 19 19 H 1.48499 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47333 * 120.00206 * 18 16 14 21 21 H 1.48500 * 109.47374 * 240.00378 * 18 16 14 22 22 C 1.50704 * 109.47309 * 164.29317 * 12 10 3 23 23 C 1.38237 * 119.99326 * 317.06414 * 22 12 10 24 24 C 1.38234 * 119.99357 * 179.78903 * 23 22 12 25 25 C 1.38235 * 120.00260 * 0.43570 * 24 23 22 26 26 C 1.38228 * 120.00180 * 359.81571 * 25 24 23 27 27 C 1.38226 * 120.00517 * 137.33172 * 22 12 10 28 28 H 1.08992 * 109.47273 * 185.67598 * 1 2 3 29 29 H 1.09001 * 109.46882 * 305.67257 * 1 2 3 30 30 H 1.09003 * 109.46953 * 65.66968 * 1 2 3 31 31 H 1.08998 * 109.47289 * 240.00672 * 2 1 3 32 32 H 1.09000 * 109.47466 * 119.99951 * 2 1 3 33 33 H 1.08994 * 109.47906 * 144.98462 * 4 3 2 34 34 H 1.09005 * 109.46807 * 24.98002 * 4 3 2 35 35 H 1.09006 * 109.47524 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.46905 * 299.99957 * 7 5 4 37 37 H 1.09001 * 109.47044 * 59.99885 * 7 5 4 38 38 H 1.09004 * 109.46929 * 179.97438 * 9 8 5 39 39 H 1.09000 * 109.47138 * 300.00158 * 9 8 5 40 40 H 1.09007 * 109.47141 * 60.00192 * 9 8 5 41 41 H 0.96998 * 120.00040 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.00433 * 359.97438 * 23 22 12 43 43 H 1.08007 * 119.99521 * 180.26960 * 24 23 22 44 44 H 1.08003 * 119.99897 * 179.83274 * 25 24 23 45 45 H 1.07998 * 120.00429 * 180.02562 * 26 25 24 46 46 H 1.08009 * 120.00189 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2229 2.0860 -1.2679 5 6 3.6865 1.9548 -1.6940 6 1 4.3325 2.2938 -0.8840 7 6 3.9347 2.8116 -2.9370 8 8 3.9750 0.5874 -1.9927 9 6 5.3308 0.2114 -1.7428 10 6 2.2794 2.0037 1.1667 11 8 2.6043 3.1721 1.1711 12 6 2.1676 1.2477 2.4655 13 1 2.6342 0.2686 2.3574 14 6 0.7137 1.0746 2.8225 15 1 0.3146 0.0865 2.9973 16 6 -0.1068 2.1778 2.9258 17 7 0.3751 3.3797 2.6956 18 14 -1.9029 1.9655 3.3928 19 1 -2.1940 0.5239 3.5981 20 1 -2.1794 2.7094 4.6480 21 1 -2.7634 2.4945 2.3043 22 6 2.8645 2.0185 3.5570 23 6 4.0919 2.6056 3.3129 24 6 4.7291 3.3163 4.3127 25 6 4.1431 3.4323 5.5594 26 6 2.9182 2.8408 5.8050 27 6 2.2789 2.1337 4.8038 28 1 -0.3633 -1.0225 0.1016 29 1 -0.3633 0.5993 0.8349 30 1 -0.3633 0.4234 -0.9364 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9742 3.1397 -1.1423 34 1 1.5812 1.6499 -2.0336 35 1 4.9776 2.7185 -3.2403 36 1 3.2888 2.4726 -3.7468 37 1 3.7147 3.8546 -2.7091 38 1 5.4683 -0.8404 -1.9940 39 1 5.9956 0.8213 -2.3543 40 1 5.5624 0.3661 -0.6890 41 1 -0.2021 4.1559 2.7687 42 1 4.5516 2.5116 2.3401 43 1 5.6861 3.7787 4.1207 44 1 4.6423 3.9853 6.3413 45 1 2.4601 2.9317 6.7788 46 1 1.3217 1.6717 4.9957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361690708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:00 Heat of formation + Delta-G solvation = -53.046942 kcal Electronic energy + Delta-G solvation = -27028.096634 eV Core-core repulsion = 23497.102766 eV Total energy + Delta-G solvation = -3530.993868 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.31206 -38.14872 -37.23655 -34.69014 -33.65982 -32.00627 -30.78746 -29.71893 -29.31596 -27.56216 -26.59602 -25.49932 -23.60478 -22.38092 -21.42957 -21.20453 -20.22008 -18.05222 -16.90463 -16.44298 -15.68039 -15.57195 -15.27977 -15.07067 -14.70664 -14.46238 -14.04932 -13.67678 -13.27825 -12.97368 -12.75546 -12.69579 -12.47517 -12.31940 -12.18342 -11.96674 -11.92386 -11.55989 -11.45172 -11.23342 -11.19018 -11.07337 -10.79187 -10.67966 -10.45631 -10.37091 -10.21861 -10.04465 -9.62611 -9.49182 -9.31634 -8.61116 -8.15643 -7.73005 -7.54352 -7.38212 -6.04076 -4.19444 2.53464 2.58907 3.21550 3.32610 3.32920 3.97197 4.07880 4.23384 4.39635 4.98345 5.17998 5.20163 5.34393 5.42621 5.48915 5.56063 5.71412 5.75106 5.82487 5.83895 5.93049 5.95736 5.97808 6.03892 6.16927 6.22736 6.26182 6.32901 6.38507 6.45995 6.58540 6.64187 6.73186 6.79984 6.89371 7.13938 7.19020 7.27835 7.42292 7.52348 7.62056 7.67879 7.74381 7.82081 8.15353 8.28131 8.58454 8.84012 9.42509 9.77290 10.93772 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.006771 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.410798 B = 4134.058313 C = 5603.839060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.129 3.871 3 N -0.619 5.619 4 C 0.128 3.872 5 C 0.070 3.930 6 H 0.063 0.937 7 C -0.170 4.170 8 O -0.381 6.381 9 C 0.034 3.966 10 C 0.543 3.457 11 O -0.528 6.528 12 C 0.060 3.940 13 H 0.052 0.948 14 C -0.530 4.530 15 H 0.067 0.933 16 C 0.074 3.926 17 N -0.830 5.830 18 Si 0.876 3.124 19 H -0.269 1.269 20 H -0.283 1.283 21 H -0.284 1.284 22 C -0.008 4.008 23 C -0.106 4.106 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.144 4.144 27 C -0.072 4.072 28 H 0.047 0.953 29 H 0.093 0.907 30 H 0.035 0.965 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.040 0.960 41 H 0.262 0.738 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.100 0.900 45 H 0.102 0.898 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.094 -4.901 -5.668 9.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.006 3.994 3 N -0.354 5.354 4 C 0.004 3.996 5 C 0.011 3.989 6 H 0.081 0.919 7 C -0.228 4.228 8 O -0.300 6.300 9 C -0.063 4.063 10 C 0.334 3.666 11 O -0.402 6.402 12 C 0.039 3.961 13 H 0.070 0.930 14 C -0.568 4.568 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.462 5.462 18 Si 0.703 3.297 19 H -0.194 1.194 20 H -0.208 1.208 21 H -0.210 1.210 22 C -0.009 4.009 23 C -0.124 4.124 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.162 4.162 27 C -0.089 4.089 28 H 0.066 0.934 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.105 0.895 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.072 0.928 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.118 0.882 45 H 0.120 0.880 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.084 -4.151 -5.721 9.326 hybrid contribution -0.960 0.399 0.177 1.055 sum 5.124 -3.752 -5.545 8.431 Atomic orbital electron populations 1.22376 0.96867 1.01412 1.02900 1.21224 0.94012 0.82767 1.01403 1.47858 1.68526 1.14155 1.04866 1.21255 0.92841 0.98845 0.86709 1.22692 0.98637 0.81640 0.95910 0.91888 1.22203 1.01557 1.00348 0.98672 1.87886 1.27256 1.27490 1.87346 1.22695 0.83826 1.00225 0.99548 1.21144 0.73628 0.87308 0.84548 1.90549 1.46821 1.16278 1.86537 1.17911 0.97159 0.93051 0.88008 0.93014 1.20596 0.91678 0.93492 1.51039 0.91436 1.25060 0.98058 0.95490 0.94860 1.70171 1.34831 0.97616 1.43557 0.86778 0.85904 0.78551 0.78430 1.19376 1.20850 1.20994 1.19904 0.91450 0.94870 0.94695 1.20878 0.95871 0.98327 0.97305 1.20800 0.99635 1.01357 0.94037 1.20753 0.96789 1.02245 0.96714 1.20994 0.95866 1.00472 0.98851 1.21107 0.98744 0.96854 0.92241 0.93402 0.88846 0.94591 0.92206 0.90664 0.89520 0.91221 0.92860 0.92014 0.91464 0.90166 0.94768 0.94169 0.92779 0.88118 0.88168 0.88198 0.88005 0.85521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.14 9.98 37.16 0.37 -2.77 16 2 C 0.13 2.28 5.65 -4.04 -0.02 2.26 16 3 N -0.62 -12.31 2.44 -173.69 -0.42 -12.73 16 4 C 0.13 2.26 5.07 -4.05 -0.02 2.24 16 5 C 0.07 1.09 2.93 -26.73 -0.08 1.01 16 6 H 0.06 1.10 7.79 -51.93 -0.40 0.69 16 7 C -0.17 -2.17 9.53 37.16 0.35 -1.81 16 8 O -0.38 -5.73 9.76 -35.23 -0.34 -6.08 16 9 C 0.03 0.41 10.82 101.05 1.09 1.50 16 10 C 0.54 12.64 5.25 -10.99 -0.06 12.58 16 11 O -0.53 -13.90 13.13 5.56 0.07 -13.83 16 12 C 0.06 1.39 1.98 -94.07 -0.19 1.20 16 13 H 0.05 1.12 6.70 -51.93 -0.35 0.77 16 14 C -0.53 -12.66 4.26 -34.44 -0.15 -12.81 16 15 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 16 C 0.07 1.86 3.75 -17.82 -0.07 1.79 16 17 N -0.83 -22.69 10.44 55.43 0.58 -22.11 16 18 Si 0.88 19.83 29.47 -169.99 -5.01 14.82 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.01 -0.19 4.42 -104.62 -0.46 -0.66 16 23 C -0.11 -2.37 8.29 -39.58 -0.33 -2.69 16 24 C -0.14 -2.85 10.05 -39.58 -0.40 -3.24 16 25 C -0.15 -2.88 10.05 -39.59 -0.40 -3.28 16 26 C -0.14 -2.97 10.05 -39.59 -0.40 -3.36 16 27 C -0.07 -1.64 8.43 -39.59 -0.33 -1.98 16 28 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.09 1.97 5.32 -51.93 -0.28 1.70 16 30 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.06 0.95 7.58 -51.93 -0.39 0.56 16 32 H 0.08 1.34 5.87 -51.93 -0.31 1.04 16 33 H 0.09 1.69 7.52 -51.93 -0.39 1.30 16 34 H 0.07 1.12 8.03 -51.93 -0.42 0.70 16 35 H 0.05 0.61 7.87 -51.93 -0.41 0.20 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 38 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.37 7.87 -51.93 -0.41 -0.04 16 40 H 0.04 0.51 8.09 -51.93 -0.42 0.09 16 41 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 42 H 0.10 2.23 7.11 -52.49 -0.37 1.86 16 43 H 0.10 1.76 8.06 -52.48 -0.42 1.34 16 44 H 0.10 1.66 8.06 -52.48 -0.42 1.23 16 45 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 46 H 0.13 2.98 6.30 -52.48 -0.33 2.65 16 LS Contribution 364.10 15.07 5.49 5.49 Total: -1.00 -29.05 364.10 -8.12 -37.17 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -7.40 Total: 7.30 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -1.08 Total: -10.02 kcal Atomic # 7 Polarization: -35.00 SS G_CDS: 0.15 Total: -34.85 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.27 Total: -19.90 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.01 Total: 14.82 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.05 -8.12 -37.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361690708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.882 kcal (2) G-P(sol) polarization free energy of solvation -29.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds