Wall clock time and date at job start Tue Mar 31 2020 08:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47260 * 2 1 4 4 C 1.46494 * 120.00514 * 271.89983 * 3 2 1 5 5 C 1.52999 * 109.47254 * 264.98755 * 4 3 2 6 6 H 1.09004 * 109.46761 * 305.94938 * 5 4 3 7 7 C 1.52996 * 109.47545 * 185.94796 * 5 4 3 8 8 O 1.42901 * 109.47320 * 65.94594 * 5 4 3 9 9 C 1.42901 * 114.00155 * 210.00271 * 8 5 4 10 10 C 1.34784 * 119.99531 * 91.89733 * 3 2 1 11 11 O 1.21277 * 119.99690 * 184.54775 * 10 3 2 12 12 C 1.50691 * 120.00084 * 4.54913 * 10 3 2 13 13 H 1.08997 * 109.47618 * 44.29153 * 12 10 3 14 14 C 1.50706 * 109.47329 * 284.28993 * 12 10 3 15 15 H 1.07995 * 119.99976 * 124.22735 * 14 12 10 16 16 C 1.37878 * 119.99799 * 304.22964 * 14 12 10 17 17 N 1.31519 * 120.00285 * 0.89897 * 16 14 12 18 18 Si 1.86797 * 120.00086 * 180.89631 * 16 14 12 19 19 H 1.48499 * 109.47222 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47333 * 120.00206 * 18 16 14 21 21 H 1.48500 * 109.47374 * 240.00378 * 18 16 14 22 22 C 1.50704 * 109.47309 * 164.29317 * 12 10 3 23 23 C 1.38237 * 119.99326 * 317.06414 * 22 12 10 24 24 C 1.38234 * 119.99357 * 179.78903 * 23 22 12 25 25 C 1.38235 * 120.00260 * 0.43570 * 24 23 22 26 26 C 1.38228 * 120.00180 * 359.81571 * 25 24 23 27 27 C 1.38226 * 120.00517 * 137.33172 * 22 12 10 28 28 H 1.08992 * 109.47273 * 185.67598 * 1 2 3 29 29 H 1.09001 * 109.46882 * 305.67257 * 1 2 3 30 30 H 1.09003 * 109.46953 * 65.66968 * 1 2 3 31 31 H 1.08998 * 109.47289 * 240.00672 * 2 1 3 32 32 H 1.09000 * 109.47466 * 119.99951 * 2 1 3 33 33 H 1.08994 * 109.47906 * 144.98462 * 4 3 2 34 34 H 1.09005 * 109.46807 * 24.98002 * 4 3 2 35 35 H 1.09006 * 109.47524 * 179.97438 * 7 5 4 36 36 H 1.08996 * 109.46905 * 299.99957 * 7 5 4 37 37 H 1.09001 * 109.47044 * 59.99885 * 7 5 4 38 38 H 1.09004 * 109.46929 * 179.97438 * 9 8 5 39 39 H 1.09000 * 109.47138 * 300.00158 * 9 8 5 40 40 H 1.09007 * 109.47141 * 60.00192 * 9 8 5 41 41 H 0.96998 * 120.00040 * 180.02562 * 17 16 14 42 42 H 1.07998 * 120.00433 * 359.97438 * 23 22 12 43 43 H 1.08007 * 119.99521 * 180.26960 * 24 23 22 44 44 H 1.08003 * 119.99897 * 179.83274 * 25 24 23 45 45 H 1.07998 * 120.00429 * 180.02562 * 26 25 24 46 46 H 1.08009 * 120.00189 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2229 2.0860 -1.2679 5 6 3.6865 1.9548 -1.6940 6 1 4.3325 2.2938 -0.8840 7 6 3.9347 2.8116 -2.9370 8 8 3.9750 0.5874 -1.9927 9 6 5.3308 0.2114 -1.7428 10 6 2.2794 2.0037 1.1667 11 8 2.6043 3.1721 1.1711 12 6 2.1676 1.2477 2.4655 13 1 2.6342 0.2686 2.3574 14 6 0.7137 1.0746 2.8225 15 1 0.3146 0.0865 2.9973 16 6 -0.1068 2.1778 2.9258 17 7 0.3751 3.3797 2.6956 18 14 -1.9029 1.9655 3.3928 19 1 -2.1940 0.5239 3.5981 20 1 -2.1794 2.7094 4.6480 21 1 -2.7634 2.4945 2.3043 22 6 2.8645 2.0185 3.5570 23 6 4.0919 2.6056 3.3129 24 6 4.7291 3.3163 4.3127 25 6 4.1431 3.4323 5.5594 26 6 2.9182 2.8408 5.8050 27 6 2.2789 2.1337 4.8038 28 1 -0.3633 -1.0225 0.1016 29 1 -0.3633 0.5993 0.8349 30 1 -0.3633 0.4234 -0.9364 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.9742 3.1397 -1.1423 34 1 1.5812 1.6499 -2.0336 35 1 4.9776 2.7185 -3.2403 36 1 3.2888 2.4726 -3.7468 37 1 3.7147 3.8546 -2.7091 38 1 5.4683 -0.8404 -1.9940 39 1 5.9956 0.8213 -2.3543 40 1 5.5624 0.3661 -0.6890 41 1 -0.2021 4.1559 2.7687 42 1 4.5516 2.5116 2.3401 43 1 5.6861 3.7787 4.1207 44 1 4.6423 3.9853 6.3413 45 1 2.4601 2.9317 6.7788 46 1 1.3217 1.6717 4.9957 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361690708.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:56 Heat of formation + Delta-G solvation = -68.148387 kcal Electronic energy + Delta-G solvation = -27028.751481 eV Core-core repulsion = 23497.102766 eV Total energy + Delta-G solvation = -3531.648715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.84 seconds Orbital eigenvalues (eV) -40.96776 -39.58711 -38.69422 -36.32934 -35.46185 -33.33173 -32.53898 -31.38141 -30.76237 -29.24490 -27.69833 -26.95471 -25.34937 -23.91141 -22.99397 -22.64058 -21.81281 -19.74133 -18.58001 -17.83970 -17.28170 -17.18328 -16.79553 -16.53467 -16.34052 -15.75470 -15.63071 -15.35893 -14.77951 -14.48334 -14.38363 -14.09195 -13.94244 -13.79293 -13.65469 -13.47040 -13.19147 -13.10095 -12.93206 -12.88220 -12.76482 -12.51287 -12.33167 -12.26676 -12.13880 -11.79846 -11.72200 -11.69228 -11.33576 -11.12963 -10.64649 -10.53091 -9.96907 -9.40572 -9.14458 -9.07445 -7.97856 -6.14811 0.86979 0.92727 1.38548 1.45393 1.52137 2.37027 2.48222 2.62037 2.87409 3.26181 3.33735 3.95575 4.12467 4.22584 4.30006 4.34690 4.36044 4.42949 4.49970 4.51673 4.56451 4.65117 4.70688 4.74292 4.81024 4.81986 4.88316 4.92539 4.98875 5.00457 5.06238 5.13543 5.16820 5.24226 5.27992 5.46886 5.54265 5.74323 5.76996 5.88110 5.95495 6.01227 6.14414 6.27999 6.43452 6.53223 6.77005 7.06144 7.48459 8.01798 8.98712 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012227 B = 0.006771 C = 0.004995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2289.410798 B = 4134.058313 C = 5603.839060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.129 3.871 3 N -0.619 5.619 4 C 0.126 3.874 5 C 0.080 3.920 6 H 0.037 0.963 7 C -0.162 4.162 8 O -0.391 6.391 9 C 0.030 3.970 10 C 0.543 3.457 11 O -0.566 6.566 12 C 0.053 3.947 13 H 0.059 0.941 14 C -0.514 4.514 15 H 0.071 0.929 16 C 0.041 3.959 17 N -0.864 5.864 18 Si 0.925 3.075 19 H -0.256 1.256 20 H -0.289 1.289 21 H -0.292 1.292 22 C -0.031 4.031 23 C -0.122 4.122 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.147 4.147 27 C -0.093 4.093 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.041 0.959 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.068 0.932 36 H 0.073 0.927 37 H 0.064 0.936 38 H 0.103 0.897 39 H 0.049 0.951 40 H 0.027 0.973 41 H 0.251 0.749 42 H 0.092 0.908 43 H 0.129 0.871 44 H 0.138 0.862 45 H 0.127 0.873 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.789 -5.911 -6.022 10.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.007 3.993 3 N -0.353 5.353 4 C 0.002 3.998 5 C 0.021 3.979 6 H 0.055 0.945 7 C -0.220 4.220 8 O -0.311 6.311 9 C -0.066 4.066 10 C 0.334 3.666 11 O -0.443 6.443 12 C 0.032 3.968 13 H 0.077 0.923 14 C -0.552 4.552 15 H 0.089 0.911 16 C -0.164 4.164 17 N -0.498 5.498 18 Si 0.752 3.248 19 H -0.179 1.179 20 H -0.215 1.215 21 H -0.219 1.219 22 C -0.032 4.032 23 C -0.141 4.141 24 C -0.160 4.160 25 C -0.161 4.161 26 C -0.165 4.165 27 C -0.111 4.111 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.102 0.898 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.060 0.940 42 H 0.110 0.890 43 H 0.147 0.853 44 H 0.156 0.844 45 H 0.145 0.855 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.773 -5.219 -6.093 10.499 hybrid contribution -1.109 0.635 0.278 1.308 sum 5.664 -4.584 -5.815 9.322 Atomic orbital electron populations 1.22285 0.96656 1.02365 1.01694 1.21349 0.94078 0.81585 1.02314 1.47897 1.67585 1.14976 1.04819 1.21356 0.94964 0.97380 0.86102 1.22453 0.96384 0.82665 0.96427 0.94458 1.22132 1.02869 0.99538 0.97466 1.87840 1.29066 1.26856 1.87292 1.22871 0.82660 1.01906 0.99209 1.21092 0.73306 0.86792 0.85421 1.90513 1.48783 1.17833 1.87219 1.17985 0.96884 0.93511 0.88396 0.92333 1.20716 0.92009 0.93231 1.49203 0.91138 1.25515 1.00671 0.95188 0.95027 1.70347 1.35396 0.98032 1.46006 0.86011 0.82562 0.78913 0.77343 1.17918 1.21538 1.21890 1.20020 0.92241 0.95918 0.95028 1.20929 0.96019 0.99412 0.97709 1.21170 1.00613 1.00409 0.93835 1.21162 0.96239 1.01423 0.97278 1.21321 0.96300 0.99520 0.99372 1.21102 0.98701 0.98328 0.92995 0.90832 0.92308 0.93937 0.89846 0.91089 0.91980 0.89344 0.91278 0.90771 0.91712 0.87872 0.93199 0.95382 0.94000 0.88998 0.85344 0.84414 0.85479 0.86953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.87 9.98 71.98 0.72 -5.15 16 2 C 0.13 4.42 5.65 86.38 0.49 4.91 16 3 N -0.62 -24.80 2.44 -821.83 -2.01 -26.81 16 4 C 0.13 4.44 5.07 86.38 0.44 4.88 16 5 C 0.08 2.45 2.93 30.59 0.09 2.54 16 6 H 0.04 1.33 7.79 -2.39 -0.02 1.31 16 7 C -0.16 -3.91 9.53 71.98 0.69 -3.23 16 8 O -0.39 -11.14 9.76 -148.98 -1.45 -12.60 16 9 C 0.03 0.67 10.82 113.37 1.23 1.90 16 10 C 0.54 25.97 5.25 87.65 0.46 26.43 16 11 O -0.57 -31.02 13.13 -3.02 -0.04 -31.06 16 12 C 0.05 2.53 1.98 -13.03 -0.03 2.50 16 13 H 0.06 2.59 6.70 -2.39 -0.02 2.58 16 14 C -0.51 -24.85 4.26 25.60 0.11 -24.74 16 15 H 0.07 3.30 7.81 -2.91 -0.02 3.27 16 16 C 0.04 2.08 3.75 84.65 0.32 2.40 16 17 N -0.86 -48.71 10.44 21.45 0.22 -48.48 16 18 Si 0.92 41.29 29.47 68.60 2.02 43.31 16 19 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 20 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 21 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 22 C -0.03 -1.49 4.42 -19.87 -0.09 -1.58 16 23 C -0.12 -5.56 8.29 22.27 0.18 -5.38 16 24 C -0.14 -5.60 10.05 22.27 0.22 -5.38 16 25 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 26 C -0.15 -5.90 10.05 22.27 0.22 -5.67 16 27 C -0.09 -4.32 8.43 22.27 0.19 -4.13 16 28 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.06 2.46 5.32 -2.39 -0.01 2.44 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 2.48 7.58 -2.39 -0.02 2.46 16 32 H 0.07 2.48 5.87 -2.39 -0.01 2.47 16 33 H 0.06 2.50 7.52 -2.39 -0.02 2.48 16 34 H 0.09 2.75 8.03 -2.38 -0.02 2.73 16 35 H 0.07 1.45 7.87 -2.38 -0.02 1.43 16 36 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.10 1.84 8.14 -2.38 -0.02 1.82 16 39 H 0.05 0.97 7.87 -2.39 -0.02 0.95 16 40 H 0.03 0.69 8.09 -2.38 -0.02 0.67 16 41 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.09 4.23 7.11 -2.91 -0.02 4.21 16 43 H 0.13 4.23 8.06 -2.91 -0.02 4.21 16 44 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 45 H 0.13 4.34 8.06 -2.91 -0.02 4.31 16 46 H 0.11 5.40 6.30 -2.91 -0.02 5.38 16 Total: -1.00 -63.88 364.10 5.16 -58.73 By element: Atomic # 1 Polarization: 30.73 SS G_CDS: 0.95 Total: 31.68 kcal Atomic # 6 Polarization: -20.23 SS G_CDS: 5.46 Total: -14.77 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -1.78 Total: -75.29 kcal Atomic # 8 Polarization: -42.16 SS G_CDS: -1.49 Total: -43.66 kcal Atomic # 14 Polarization: 41.29 SS G_CDS: 2.02 Total: 43.31 kcal Total: -63.88 5.16 -58.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361690708.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.420 kcal (2) G-P(sol) polarization free energy of solvation -63.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.84 seconds