Wall clock time and date at job start Tue Mar 31 2020 08:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47275 * 2 1 4 4 C 1.46495 * 120.00461 * 273.26483 * 3 2 1 5 5 C 1.52994 * 109.47113 * 269.99874 * 4 3 2 6 6 H 1.09006 * 109.47522 * 59.99297 * 5 4 3 7 7 C 1.52999 * 109.47428 * 179.97438 * 5 4 3 8 8 O 1.42896 * 109.47202 * 299.99906 * 5 4 3 9 9 C 1.42898 * 114.00382 * 150.00003 * 8 5 4 10 10 C 1.34781 * 119.99695 * 93.26052 * 3 2 1 11 11 O 1.21279 * 120.00096 * 184.16036 * 10 3 2 12 12 C 1.50705 * 119.99971 * 4.15646 * 10 3 2 13 13 H 1.09001 * 109.46797 * 324.50135 * 12 10 3 14 14 C 1.50694 * 109.46890 * 84.50229 * 12 10 3 15 15 H 1.07997 * 120.00444 * 26.14941 * 14 12 10 16 16 C 1.37884 * 119.99934 * 206.15207 * 14 12 10 17 17 N 1.31512 * 119.99552 * 354.83629 * 16 14 12 18 18 Si 1.86801 * 120.00102 * 174.84200 * 16 14 12 19 19 H 1.48506 * 109.46760 * 89.99807 * 18 16 14 20 20 H 1.48499 * 109.46761 * 209.99387 * 18 16 14 21 21 H 1.48497 * 109.46946 * 329.99965 * 18 16 14 22 22 C 1.50693 * 109.47025 * 204.50414 * 12 10 3 23 23 C 1.38241 * 119.99993 * 292.27985 * 22 12 10 24 24 C 1.38236 * 120.00024 * 179.81317 * 23 22 12 25 25 C 1.38229 * 119.99973 * 0.39271 * 24 23 22 26 26 C 1.38235 * 120.00489 * 359.86047 * 25 24 23 27 27 C 1.38230 * 120.00390 * 112.55350 * 22 12 10 28 28 H 1.09005 * 109.47265 * 299.99669 * 1 2 3 29 29 H 1.08997 * 109.47732 * 59.99270 * 1 2 3 30 30 H 1.08996 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47252 * 240.00845 * 2 1 3 32 32 H 1.09004 * 109.47574 * 120.00385 * 2 1 3 33 33 H 1.09012 * 109.46908 * 29.99514 * 4 3 2 34 34 H 1.08996 * 109.47351 * 149.99196 * 4 3 2 35 35 H 1.08996 * 109.47389 * 300.00307 * 7 5 4 36 36 H 1.09006 * 109.47075 * 59.99959 * 7 5 4 37 37 H 1.08999 * 109.47409 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47104 * 180.02562 * 9 8 5 39 39 H 1.08997 * 109.47250 * 299.99679 * 9 8 5 40 40 H 1.08997 * 109.47155 * 59.99841 * 9 8 5 41 41 H 0.97001 * 120.00036 * 179.97438 * 17 16 14 42 42 H 1.08002 * 119.99296 * 359.97438 * 23 22 12 43 43 H 1.08001 * 119.99670 * 180.23184 * 24 23 22 44 44 H 1.08005 * 119.99686 * 179.83514 * 25 24 23 45 45 H 1.07998 * 120.00642 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00062 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1944 2.0960 -1.2666 5 6 3.6135 1.8648 -1.7896 6 1 3.7728 0.7983 -1.9490 7 6 3.7972 2.6107 -3.1127 8 8 4.5584 2.3498 -0.8337 9 6 5.8010 1.6441 -0.8350 10 6 2.3055 1.9944 1.1654 11 8 2.6374 3.1609 1.1712 12 6 2.2142 1.2305 2.4613 13 1 1.3855 0.5244 2.4091 14 6 3.5001 0.4798 2.6934 15 1 4.4212 0.8391 2.2590 16 6 3.5006 -0.6659 3.4606 17 7 2.4011 -1.0477 4.0728 18 14 5.0631 -1.6756 3.6303 19 1 5.8412 -1.1908 4.7986 20 1 4.7099 -3.1042 3.8291 21 1 5.8800 -1.5343 2.3983 22 6 1.9828 2.1937 3.5969 23 6 2.9757 3.0837 3.9617 24 6 2.7619 3.9699 5.0009 25 6 1.5583 3.9606 5.6805 26 6 0.5673 3.0672 5.3192 27 6 0.7797 2.1836 4.2775 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.4736 1.7260 -1.9958 34 1 2.0351 3.1624 -1.1072 35 1 3.0765 2.2405 -3.8418 36 1 3.6379 3.6773 -2.9537 37 1 4.8081 2.4456 -3.4856 38 1 6.4627 2.0722 -0.0820 39 1 5.6224 0.5935 -0.6062 40 1 6.2655 1.7281 -1.8175 41 1 2.4013 -1.8539 4.6122 42 1 3.9175 3.0883 3.4330 43 1 3.5364 4.6676 5.2834 44 1 1.3924 4.6512 6.4942 45 1 -0.3730 3.0597 5.8505 46 1 0.0054 1.4856 3.9951 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361690711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:11 Heat of formation + Delta-G solvation = -62.169583 kcal Electronic energy + Delta-G solvation = -26805.251559 eV Core-core repulsion = 23273.862104 eV Total energy + Delta-G solvation = -3531.389455 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -39.41348 -38.09907 -37.27101 -35.06043 -33.60809 -32.06420 -30.90060 -29.81598 -29.67083 -27.65078 -26.38948 -25.57588 -23.67477 -22.63859 -21.47449 -21.33942 -20.27312 -18.12825 -16.69735 -16.53380 -16.09264 -15.70497 -15.43869 -15.08369 -14.55808 -14.35154 -14.07109 -13.81044 -13.33263 -13.27420 -12.94227 -12.82560 -12.47879 -12.37414 -12.10384 -12.04946 -12.00577 -11.73922 -11.61000 -11.45931 -11.21119 -11.07458 -10.99606 -10.90424 -10.55696 -10.42166 -10.27467 -10.13529 -9.87709 -9.33200 -9.28341 -8.65855 -8.41632 -7.85199 -7.81284 -7.47852 -6.19485 -4.23734 2.48644 2.52438 3.21656 3.29356 3.30976 3.78449 3.89990 4.17086 4.35169 4.93136 5.10423 5.16687 5.30296 5.34121 5.49335 5.52580 5.56526 5.75141 5.75608 5.77088 5.80963 5.86711 5.90443 5.95860 5.99952 6.06762 6.11260 6.13976 6.22373 6.35671 6.43339 6.47823 6.61376 6.66218 6.74134 6.95269 7.08249 7.25178 7.36808 7.48016 7.58502 7.64370 7.73283 7.88395 8.08570 8.15362 8.39665 8.79902 9.36597 9.42303 10.88523 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.006593 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.223194 B = 4245.738123 C = 5052.974205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.103 3.897 3 N -0.615 5.615 4 C 0.119 3.881 5 C 0.068 3.932 6 H 0.056 0.944 7 C -0.171 4.171 8 O -0.357 6.357 9 C 0.035 3.965 10 C 0.536 3.464 11 O -0.546 6.546 12 C 0.057 3.943 13 H 0.075 0.925 14 C -0.501 4.501 15 H 0.062 0.938 16 C 0.072 3.928 17 N -0.876 5.876 18 Si 0.893 3.107 19 H -0.279 1.279 20 H -0.285 1.285 21 H -0.273 1.273 22 C -0.014 4.014 23 C -0.075 4.075 24 C -0.139 4.139 25 C -0.149 4.149 26 C -0.136 4.136 27 C -0.116 4.116 28 H 0.059 0.941 29 H 0.046 0.954 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.108 0.892 33 H 0.077 0.923 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.054 0.946 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.029 0.971 41 H 0.264 0.736 42 H 0.115 0.885 43 H 0.104 0.896 44 H 0.103 0.897 45 H 0.104 0.896 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.439 1.524 -9.272 9.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.020 4.020 3 N -0.349 5.349 4 C -0.005 4.005 5 C 0.009 3.991 6 H 0.074 0.926 7 C -0.229 4.229 8 O -0.275 6.275 9 C -0.062 4.062 10 C 0.327 3.673 11 O -0.422 6.422 12 C 0.036 3.964 13 H 0.093 0.907 14 C -0.539 4.539 15 H 0.080 0.920 16 C -0.132 4.132 17 N -0.512 5.512 18 Si 0.720 3.280 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.198 1.198 22 C -0.015 4.015 23 C -0.093 4.093 24 C -0.157 4.157 25 C -0.167 4.167 26 C -0.154 4.154 27 C -0.134 4.134 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.126 0.874 33 H 0.095 0.905 34 H 0.103 0.897 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.073 0.927 38 H 0.099 0.901 39 H 0.059 0.941 40 H 0.047 0.953 41 H 0.074 0.926 42 H 0.133 0.867 43 H 0.122 0.878 44 H 0.121 0.879 45 H 0.122 0.878 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -1.387 2.152 -9.007 9.364 hybrid contribution 0.993 -1.053 0.011 1.447 sum -0.394 1.099 -8.996 9.071 Atomic orbital electron populations 1.22180 0.96979 1.01566 1.01739 1.21593 0.93356 0.83103 1.03996 1.47822 1.67618 1.14030 1.05406 1.21391 0.93385 0.99296 0.86383 1.22561 0.91053 0.96965 0.88548 0.92618 1.22236 1.01629 1.01931 0.97134 1.88133 1.24096 1.57214 1.58043 1.22697 0.86704 0.96812 0.99972 1.21422 0.73688 0.86659 0.85489 1.90560 1.47064 1.17409 1.87200 1.18095 1.00747 0.92239 0.85331 0.90663 1.20601 0.92572 1.08079 1.32686 0.91990 1.24931 0.96328 0.97201 0.94778 1.69948 1.26908 1.24251 1.30120 0.86570 0.83401 0.79269 0.78746 1.20470 1.21052 1.19772 1.20097 0.91624 0.93092 0.96691 1.20905 0.99137 0.94058 0.95193 1.20971 0.97017 1.00069 0.97659 1.20775 0.94743 1.00405 1.00768 1.20860 0.98520 0.97483 0.98571 1.20944 0.97354 0.98328 0.96789 0.92234 0.93480 0.92079 0.92277 0.87355 0.90523 0.89715 0.91964 0.91720 0.92719 0.90066 0.94091 0.95263 0.92576 0.86664 0.87752 0.87920 0.87783 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 10.16 37.15 0.38 -2.01 16 2 C 0.10 1.70 5.76 -4.04 -0.02 1.68 16 3 N -0.62 -11.48 2.43 -173.69 -0.42 -11.90 16 4 C 0.12 1.89 5.21 -4.05 -0.02 1.87 16 5 C 0.07 1.03 2.99 -26.73 -0.08 0.95 16 6 H 0.06 0.80 7.79 -51.93 -0.40 0.40 16 7 C -0.17 -2.02 9.53 37.16 0.35 -1.66 16 8 O -0.36 -6.63 9.14 -38.19 -0.35 -6.98 16 9 C 0.04 0.55 10.82 101.05 1.09 1.64 16 10 C 0.54 12.17 6.20 -10.98 -0.07 12.10 16 11 O -0.55 -13.74 14.22 2.60 0.04 -13.70 16 12 C 0.06 1.36 1.38 -94.08 -0.13 1.23 16 13 H 0.08 1.84 5.61 -51.93 -0.29 1.55 16 14 C -0.50 -12.79 6.94 -34.44 -0.24 -13.02 16 15 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 16 C 0.07 1.83 5.45 -17.82 -0.10 1.74 16 17 N -0.88 -23.04 13.00 55.43 0.72 -22.32 16 18 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 19 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 20 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.01 -0.34 4.55 -104.63 -0.48 -0.81 16 23 C -0.07 -1.78 8.05 -39.58 -0.32 -2.10 16 24 C -0.14 -2.90 10.05 -39.59 -0.40 -3.30 16 25 C -0.15 -2.90 10.05 -39.59 -0.40 -3.30 16 26 C -0.14 -2.73 10.05 -39.58 -0.40 -3.13 16 27 C -0.12 -2.60 9.67 -39.58 -0.38 -2.98 16 28 H 0.06 0.95 7.86 -51.93 -0.41 0.55 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.06 0.83 8.10 -51.93 -0.42 0.41 16 32 H 0.11 2.14 5.74 -51.93 -0.30 1.84 16 33 H 0.08 0.95 8.07 -51.92 -0.42 0.53 16 34 H 0.08 1.49 7.37 -51.93 -0.38 1.11 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.05 0.60 7.87 -51.93 -0.41 0.20 16 38 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 39 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 40 H 0.03 0.37 7.87 -51.93 -0.41 -0.03 16 41 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 42 H 0.12 2.85 7.69 -52.49 -0.40 2.45 16 43 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 44 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 45 H 0.10 1.77 8.06 -52.49 -0.42 1.35 16 46 H 0.11 2.32 7.96 -52.49 -0.42 1.91 16 LS Contribution 377.51 15.07 5.69 5.69 Total: -1.00 -29.95 377.51 -8.16 -38.11 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -7.61 Total: 7.07 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.20 Total: -11.11 kcal Atomic # 7 Polarization: -34.52 SS G_CDS: 0.30 Total: -34.22 kcal Atomic # 8 Polarization: -20.37 SS G_CDS: -0.31 Total: -20.68 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -29.95 -8.16 -38.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361690711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.061 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds