Wall clock time and date at job start Tue Mar 31 2020 08:55:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46507 * 109.47275 * 2 1 4 4 C 1.46495 * 120.00461 * 273.26483 * 3 2 1 5 5 C 1.52994 * 109.47113 * 269.99874 * 4 3 2 6 6 H 1.09006 * 109.47522 * 59.99297 * 5 4 3 7 7 C 1.52999 * 109.47428 * 179.97438 * 5 4 3 8 8 O 1.42896 * 109.47202 * 299.99906 * 5 4 3 9 9 C 1.42898 * 114.00382 * 150.00003 * 8 5 4 10 10 C 1.34781 * 119.99695 * 93.26052 * 3 2 1 11 11 O 1.21279 * 120.00096 * 184.16036 * 10 3 2 12 12 C 1.50705 * 119.99971 * 4.15646 * 10 3 2 13 13 H 1.09001 * 109.46797 * 324.50135 * 12 10 3 14 14 C 1.50694 * 109.46890 * 84.50229 * 12 10 3 15 15 H 1.07997 * 120.00444 * 26.14941 * 14 12 10 16 16 C 1.37884 * 119.99934 * 206.15207 * 14 12 10 17 17 N 1.31512 * 119.99552 * 354.83629 * 16 14 12 18 18 Si 1.86801 * 120.00102 * 174.84200 * 16 14 12 19 19 H 1.48506 * 109.46760 * 89.99807 * 18 16 14 20 20 H 1.48499 * 109.46761 * 209.99387 * 18 16 14 21 21 H 1.48497 * 109.46946 * 329.99965 * 18 16 14 22 22 C 1.50693 * 109.47025 * 204.50414 * 12 10 3 23 23 C 1.38241 * 119.99993 * 292.27985 * 22 12 10 24 24 C 1.38236 * 120.00024 * 179.81317 * 23 22 12 25 25 C 1.38229 * 119.99973 * 0.39271 * 24 23 22 26 26 C 1.38235 * 120.00489 * 359.86047 * 25 24 23 27 27 C 1.38230 * 120.00390 * 112.55350 * 22 12 10 28 28 H 1.09005 * 109.47265 * 299.99669 * 1 2 3 29 29 H 1.08997 * 109.47732 * 59.99270 * 1 2 3 30 30 H 1.08996 * 109.47146 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47252 * 240.00845 * 2 1 3 32 32 H 1.09004 * 109.47574 * 120.00385 * 2 1 3 33 33 H 1.09012 * 109.46908 * 29.99514 * 4 3 2 34 34 H 1.08996 * 109.47351 * 149.99196 * 4 3 2 35 35 H 1.08996 * 109.47389 * 300.00307 * 7 5 4 36 36 H 1.09006 * 109.47075 * 59.99959 * 7 5 4 37 37 H 1.08999 * 109.47409 * 180.02562 * 7 5 4 38 38 H 1.09004 * 109.47104 * 180.02562 * 9 8 5 39 39 H 1.08997 * 109.47250 * 299.99679 * 9 8 5 40 40 H 1.08997 * 109.47155 * 59.99841 * 9 8 5 41 41 H 0.97001 * 120.00036 * 179.97438 * 17 16 14 42 42 H 1.08002 * 119.99296 * 359.97438 * 23 22 12 43 43 H 1.08001 * 119.99670 * 180.23184 * 24 23 22 44 44 H 1.08005 * 119.99686 * 179.83514 * 25 24 23 45 45 H 1.07998 * 120.00642 * 179.97438 * 26 25 24 46 46 H 1.08001 * 120.00062 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1944 2.0960 -1.2666 5 6 3.6135 1.8648 -1.7896 6 1 3.7728 0.7983 -1.9490 7 6 3.7972 2.6107 -3.1127 8 8 4.5584 2.3498 -0.8337 9 6 5.8010 1.6441 -0.8350 10 6 2.3055 1.9944 1.1654 11 8 2.6374 3.1609 1.1712 12 6 2.2142 1.2305 2.4613 13 1 1.3855 0.5244 2.4091 14 6 3.5001 0.4798 2.6934 15 1 4.4212 0.8391 2.2590 16 6 3.5006 -0.6659 3.4606 17 7 2.4011 -1.0477 4.0728 18 14 5.0631 -1.6756 3.6303 19 1 5.8412 -1.1908 4.7986 20 1 4.7099 -3.1042 3.8291 21 1 5.8800 -1.5343 2.3983 22 6 1.9828 2.1937 3.5969 23 6 2.9757 3.0837 3.9617 24 6 2.7619 3.9699 5.0009 25 6 1.5583 3.9606 5.6805 26 6 0.5673 3.0672 5.3192 27 6 0.7797 2.1836 4.2775 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8900 33 1 1.4736 1.7260 -1.9958 34 1 2.0351 3.1624 -1.1072 35 1 3.0765 2.2405 -3.8418 36 1 3.6379 3.6773 -2.9537 37 1 4.8081 2.4456 -3.4856 38 1 6.4627 2.0722 -0.0820 39 1 5.6224 0.5935 -0.6062 40 1 6.2655 1.7281 -1.8175 41 1 2.4013 -1.8539 4.6122 42 1 3.9175 3.0883 3.4330 43 1 3.5364 4.6676 5.2834 44 1 1.3924 4.6512 6.4942 45 1 -0.3730 3.0597 5.8505 46 1 0.0054 1.4856 3.9951 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361690711.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:08 Heat of formation + Delta-G solvation = -78.081003 kcal Electronic energy + Delta-G solvation = -26805.941530 eV Core-core repulsion = 23273.862104 eV Total energy + Delta-G solvation = -3532.079426 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 3.10 seconds Orbital eigenvalues (eV) -41.03829 -39.62512 -38.74213 -36.62395 -35.46715 -33.37489 -32.64618 -31.49705 -30.97148 -29.33042 -27.65524 -27.03960 -25.43127 -24.03340 -23.16002 -22.70544 -21.80039 -19.73130 -18.56322 -18.04440 -17.61805 -17.21780 -17.03291 -16.41765 -16.27844 -15.83184 -15.62631 -15.49003 -14.89477 -14.64563 -14.59125 -14.05741 -14.00903 -13.74426 -13.65779 -13.41536 -13.31505 -13.21856 -13.08616 -12.87870 -12.82488 -12.74894 -12.46534 -12.35275 -12.11828 -11.95839 -11.81218 -11.63598 -11.56278 -11.21130 -10.62037 -10.57229 -10.20187 -9.51643 -9.34029 -9.20225 -8.16570 -6.25777 0.78835 0.84258 1.38208 1.41273 1.49497 2.09251 2.39468 2.46210 2.96944 3.12561 3.28576 3.97828 4.08937 4.17027 4.24620 4.28965 4.30999 4.31845 4.40362 4.45587 4.49362 4.53530 4.59066 4.65155 4.72279 4.77921 4.82974 4.89238 4.92269 4.96431 5.02005 5.04936 5.13383 5.18320 5.30039 5.41146 5.41840 5.50114 5.69252 5.80862 5.87295 5.95911 6.02841 6.31285 6.42246 6.44657 6.74487 6.78075 7.38718 7.68562 8.90729 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010749 B = 0.006593 C = 0.005540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2604.223194 B = 4245.738123 C = 5052.974205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.101 3.899 3 N -0.611 5.611 4 C 0.115 3.885 5 C 0.063 3.937 6 H 0.065 0.935 7 C -0.161 4.161 8 O -0.397 6.397 9 C 0.036 3.964 10 C 0.533 3.467 11 O -0.580 6.580 12 C 0.063 3.937 13 H 0.063 0.937 14 C -0.504 4.504 15 H 0.039 0.961 16 C 0.037 3.963 17 N -0.897 5.897 18 Si 0.944 3.056 19 H -0.285 1.285 20 H -0.274 1.274 21 H -0.269 1.269 22 C -0.042 4.042 23 C -0.103 4.103 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.132 4.132 27 C -0.136 4.136 28 H 0.033 0.967 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.120 0.880 34 H 0.062 0.938 35 H 0.092 0.908 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.072 0.928 39 H 0.031 0.969 40 H 0.061 0.939 41 H 0.265 0.735 42 H 0.088 0.912 43 H 0.130 0.870 44 H 0.146 0.854 45 H 0.140 0.860 46 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.175 1.353 -10.118 10.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.022 4.022 3 N -0.343 5.343 4 C -0.007 4.007 5 C 0.004 3.996 6 H 0.083 0.917 7 C -0.219 4.219 8 O -0.316 6.316 9 C -0.061 4.061 10 C 0.324 3.676 11 O -0.460 6.460 12 C 0.042 3.958 13 H 0.080 0.920 14 C -0.542 4.542 15 H 0.057 0.943 16 C -0.165 4.165 17 N -0.534 5.534 18 Si 0.769 3.231 19 H -0.211 1.211 20 H -0.199 1.199 21 H -0.193 1.193 22 C -0.043 4.043 23 C -0.122 4.122 24 C -0.159 4.159 25 C -0.161 4.161 26 C -0.150 4.150 27 C -0.154 4.154 28 H 0.053 0.947 29 H 0.089 0.911 30 H 0.099 0.901 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.090 0.910 39 H 0.049 0.951 40 H 0.079 0.921 41 H 0.075 0.925 42 H 0.107 0.893 43 H 0.148 0.852 44 H 0.163 0.837 45 H 0.158 0.842 46 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -2.134 1.952 -9.892 10.307 hybrid contribution 1.187 -0.960 0.267 1.550 sum -0.947 0.991 -9.625 9.722 Atomic orbital electron populations 1.22095 0.94981 1.02838 1.01621 1.21677 0.94947 0.81781 1.03758 1.47830 1.66307 1.14751 1.05412 1.21684 0.95402 0.97922 0.85733 1.22758 0.89648 0.97918 0.89288 0.91742 1.22153 1.03139 1.00875 0.95708 1.88091 1.25467 1.58278 1.59777 1.22726 0.86075 0.95777 1.01508 1.21222 0.73768 0.86207 0.86441 1.90523 1.48961 1.18673 1.87849 1.17948 0.99327 0.92058 0.86516 0.91951 1.20544 0.92418 1.08558 1.32636 0.94286 1.25462 0.98663 0.97876 0.94482 1.70026 1.28177 1.24570 1.30621 0.85780 0.80504 0.78393 0.78385 1.21131 1.19947 1.19327 1.20246 0.92769 0.93911 0.97346 1.20848 0.98369 0.96025 0.96945 1.21306 0.98582 0.99481 0.96577 1.21238 0.93486 1.00351 1.01015 1.21290 1.00116 0.96168 0.97399 1.21103 0.96889 0.99494 0.97948 0.94746 0.91098 0.90123 0.89035 0.91019 0.86255 0.91952 0.88970 0.92730 0.91820 0.90985 0.95073 0.92086 0.92533 0.89347 0.85189 0.83655 0.84189 0.87395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.32 10.16 71.98 0.73 -3.59 16 2 C 0.10 3.30 5.76 86.38 0.50 3.80 16 3 N -0.61 -23.07 2.43 -821.80 -1.99 -25.06 16 4 C 0.12 3.54 5.21 86.38 0.45 3.99 16 5 C 0.06 1.81 2.99 30.59 0.09 1.90 16 6 H 0.06 1.73 7.79 -2.38 -0.02 1.71 16 7 C -0.16 -3.41 9.53 71.98 0.69 -2.73 16 8 O -0.40 -15.04 9.14 -146.15 -1.34 -16.38 16 9 C 0.04 1.13 10.82 113.37 1.23 2.36 16 10 C 0.53 25.34 6.20 87.66 0.54 25.88 16 11 O -0.58 -30.84 14.22 -0.20 0.00 -30.84 16 12 C 0.06 3.16 1.38 -13.03 -0.02 3.14 16 13 H 0.06 3.23 5.61 -2.39 -0.01 3.22 16 14 C -0.50 -26.98 6.94 25.60 0.18 -26.80 16 15 H 0.04 2.22 7.81 -2.91 -0.02 2.20 16 16 C 0.04 1.95 5.45 84.66 0.46 2.41 16 17 N -0.90 -48.36 13.00 21.45 0.28 -48.08 16 18 Si 0.94 42.19 29.54 68.60 2.03 44.22 16 19 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 20 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.04 -2.10 4.55 -19.87 -0.09 -2.19 16 23 C -0.10 -5.13 8.05 22.27 0.18 -4.95 16 24 C -0.14 -5.85 10.05 22.27 0.22 -5.62 16 25 C -0.14 -5.24 10.05 22.27 0.22 -5.02 16 26 C -0.13 -5.06 10.05 22.27 0.22 -4.84 16 27 C -0.14 -6.19 9.67 22.27 0.22 -5.98 16 28 H 0.03 1.11 7.86 -2.38 -0.02 1.09 16 29 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.09 2.38 8.10 -2.39 -0.02 2.36 16 32 H 0.07 2.92 5.74 -2.38 -0.01 2.90 16 33 H 0.12 2.59 8.07 -2.38 -0.02 2.57 16 34 H 0.06 2.22 7.37 -2.39 -0.02 2.20 16 35 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 36 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.06 1.24 7.87 -2.39 -0.02 1.22 16 38 H 0.07 2.33 8.14 -2.39 -0.02 2.32 16 39 H 0.03 1.01 8.08 -2.39 -0.02 0.99 16 40 H 0.06 1.50 7.87 -2.39 -0.02 1.48 16 41 H 0.27 13.66 8.31 -92.71 -0.77 12.89 16 42 H 0.09 4.72 7.69 -2.91 -0.02 4.70 16 43 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 44 H 0.15 4.09 8.06 -2.91 -0.02 4.06 16 45 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 46 H 0.11 4.77 7.96 -2.91 -0.02 4.75 16 Total: -1.00 -68.84 377.51 5.73 -63.11 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.94 Total: 31.27 kcal Atomic # 6 Polarization: -24.06 SS G_CDS: 5.82 Total: -18.23 kcal Atomic # 7 Polarization: -71.43 SS G_CDS: -1.72 Total: -73.15 kcal Atomic # 8 Polarization: -45.88 SS G_CDS: -1.34 Total: -47.22 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -68.84 5.73 -63.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361690711.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.968 kcal (2) G-P(sol) polarization free energy of solvation -68.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.11 seconds