Wall clock time and date at job start Tue Mar 31 2020 08:55:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46504 * 109.46913 * 2 1 4 4 C 1.46509 * 119.99856 * 272.63676 * 3 2 1 5 5 C 1.52995 * 109.46984 * 270.00365 * 4 3 2 6 6 H 1.08997 * 109.47840 * 59.99867 * 5 4 3 7 7 C 1.53003 * 109.46743 * 180.02562 * 5 4 3 8 8 O 1.42901 * 109.47011 * 299.99423 * 5 4 3 9 9 C 1.42909 * 113.99875 * 150.00169 * 8 5 4 10 10 C 1.34768 * 120.00403 * 92.63823 * 3 2 1 11 11 O 1.21283 * 120.00319 * 185.51866 * 10 3 2 12 12 C 1.50703 * 119.99646 * 5.51988 * 10 3 2 13 13 H 1.08994 * 109.47549 * 37.06686 * 12 10 3 14 14 C 1.50698 * 109.46812 * 277.06421 * 12 10 3 15 15 H 1.07995 * 120.00423 * 333.40516 * 14 12 10 16 16 C 1.37878 * 119.99703 * 153.39862 * 14 12 10 17 17 N 1.31518 * 120.00035 * 6.26753 * 16 14 12 18 18 Si 1.86804 * 120.00070 * 186.26758 * 16 14 12 19 19 H 1.48507 * 109.47124 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.47014 * 299.99850 * 18 16 14 21 21 H 1.48493 * 109.47311 * 60.00271 * 18 16 14 22 22 C 1.50706 * 109.47240 * 157.07095 * 12 10 3 23 23 C 1.38235 * 120.00010 * 66.06366 * 22 12 10 24 24 C 1.38230 * 119.99719 * 179.79004 * 23 22 12 25 25 C 1.38233 * 120.00399 * 0.44581 * 24 23 22 26 26 C 1.38230 * 119.99720 * 359.80967 * 25 24 23 27 27 C 1.38237 * 120.00396 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46894 * 305.28964 * 1 2 3 29 29 H 1.08998 * 109.46840 * 65.29436 * 1 2 3 30 30 H 1.09002 * 109.46533 * 185.29292 * 1 2 3 31 31 H 1.08997 * 109.47364 * 239.99734 * 2 1 3 32 32 H 1.08996 * 109.47533 * 119.99856 * 2 1 3 33 33 H 1.08999 * 109.46820 * 30.00242 * 4 3 2 34 34 H 1.08997 * 109.46941 * 149.99682 * 4 3 2 35 35 H 1.08994 * 109.47186 * 299.99432 * 7 5 4 36 36 H 1.08998 * 109.47451 * 59.99794 * 7 5 4 37 37 H 1.09002 * 109.46662 * 179.97438 * 7 5 4 38 38 H 1.09000 * 109.47013 * 180.02562 * 9 8 5 39 39 H 1.08995 * 109.46813 * 300.00634 * 9 8 5 40 40 H 1.09004 * 109.46806 * 60.00495 * 9 8 5 41 41 H 0.96995 * 120.00046 * 355.06577 * 17 16 14 42 42 H 1.08006 * 120.00099 * 0.02562 * 23 22 12 43 43 H 1.08005 * 120.00163 * 180.28128 * 24 23 22 44 44 H 1.07999 * 120.00270 * 179.83097 * 25 24 23 45 45 H 1.08002 * 120.00063 * 179.97438 * 26 25 24 46 46 H 1.07994 * 120.00742 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2074 2.0914 -1.2675 5 6 3.6318 1.8582 -1.7751 6 1 3.7927 0.7912 -1.9289 7 6 3.8294 2.6003 -3.0984 8 8 4.5668 2.3468 -0.8113 9 6 5.8094 1.6411 -0.7972 10 6 2.2936 1.9988 1.1658 11 8 2.6014 3.1719 1.1729 12 6 2.2189 1.2315 2.4608 13 1 2.5806 0.2156 2.3026 14 6 0.7898 1.1875 2.9369 15 1 0.1015 1.9696 2.6524 16 6 0.3609 0.1486 3.7355 17 7 1.2246 -0.7365 4.1832 18 14 -1.4468 -0.0019 4.1815 19 1 -1.6466 -1.1952 5.0426 20 1 -1.8790 1.2155 4.9138 21 1 -2.2521 -0.1461 2.9422 22 6 3.0732 1.9131 3.4985 23 6 2.7300 3.1705 3.9590 24 6 3.5112 3.7937 4.9140 25 6 4.6407 3.1636 5.4018 26 6 4.9868 1.9084 4.9375 27 6 4.2032 1.2832 3.9857 28 1 -0.3633 0.5937 0.8388 29 1 -0.3633 0.4295 -0.9336 30 1 -0.3632 -1.0233 0.0948 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5138 0.8899 33 1 1.4941 1.7187 -2.0026 34 1 2.0465 3.1584 -1.1137 35 1 3.1162 2.2280 -3.8337 36 1 3.6687 3.6673 -2.9442 37 1 4.8443 2.4345 -3.4598 38 1 6.4634 2.0720 -0.0392 39 1 5.6284 0.5914 -0.5664 40 1 6.2840 1.7216 -1.7753 41 1 2.1498 -0.7004 3.8944 42 1 1.8494 3.6643 3.5753 43 1 3.2406 4.7743 5.2771 44 1 5.2526 3.6517 6.1460 45 1 5.8695 1.4162 5.3183 46 1 4.4737 0.3027 3.6226 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361690714.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:55:19 Heat of formation + Delta-G solvation = -63.002703 kcal Electronic energy + Delta-G solvation = -26873.756837 eV Core-core repulsion = 23342.331255 eV Total energy + Delta-G solvation = -3531.425582 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.55394 -38.26718 -37.42281 -35.12364 -33.96281 -32.11582 -30.77294 -29.96576 -29.61096 -27.60780 -26.54889 -25.52552 -23.50218 -22.74214 -21.57695 -21.46764 -20.44592 -18.41009 -17.12173 -16.61170 -16.08019 -15.91532 -15.60511 -15.18916 -14.63453 -14.24293 -13.94766 -13.83031 -13.62539 -13.18760 -12.96577 -12.94833 -12.61919 -12.41186 -12.29920 -12.14920 -12.06821 -11.85342 -11.62475 -11.52820 -11.36562 -11.23050 -10.87800 -10.64870 -10.59388 -10.46406 -10.18819 -10.16004 -10.00476 -9.48240 -8.91990 -8.63426 -8.49867 -7.95954 -7.93184 -7.57376 -6.51488 -4.23688 2.33780 2.39819 3.35803 3.38276 3.56154 3.73375 3.78154 4.01153 4.43637 4.80749 4.98821 5.18746 5.21933 5.23745 5.39313 5.45146 5.50420 5.54030 5.65441 5.69925 5.75411 5.77670 5.82937 5.88162 5.92699 5.97190 6.02925 6.11189 6.18005 6.23847 6.37373 6.41737 6.49628 6.57983 6.70408 6.93447 7.00392 7.05509 7.28515 7.34488 7.43779 7.47448 7.68272 7.90667 8.00133 8.23691 8.29523 8.67593 9.28861 9.44754 10.87072 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.011060 B = 0.007084 C = 0.004912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2530.978935 B = 3951.506234 C = 5699.339424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.616 5.616 4 C 0.119 3.881 5 C 0.068 3.932 6 H 0.055 0.945 7 C -0.171 4.171 8 O -0.360 6.360 9 C 0.033 3.967 10 C 0.542 3.458 11 O -0.545 6.545 12 C 0.048 3.952 13 H 0.057 0.943 14 C -0.579 4.579 15 H 0.055 0.945 16 C 0.034 3.966 17 N -0.895 5.895 18 Si 1.062 2.938 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.284 1.284 22 C -0.024 4.024 23 C -0.069 4.069 24 C -0.135 4.135 25 C -0.146 4.146 26 C -0.132 4.132 27 C -0.128 4.128 28 H 0.086 0.914 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.036 0.964 40 H 0.033 0.967 41 H 0.272 0.728 42 H 0.116 0.884 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.362 0.755 -10.054 10.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.005 4.005 3 N -0.350 5.350 4 C -0.005 4.005 5 C 0.009 3.991 6 H 0.073 0.927 7 C -0.229 4.229 8 O -0.278 6.278 9 C -0.064 4.064 10 C 0.333 3.667 11 O -0.422 6.422 12 C 0.027 3.973 13 H 0.075 0.925 14 C -0.617 4.617 15 H 0.074 0.926 16 C -0.173 4.173 17 N -0.529 5.529 18 Si 0.889 3.111 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.211 1.211 22 C -0.025 4.025 23 C -0.087 4.087 24 C -0.154 4.154 25 C -0.164 4.164 26 C -0.150 4.150 27 C -0.146 4.146 28 H 0.105 0.895 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.105 0.895 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.100 0.900 39 H 0.055 0.945 40 H 0.051 0.949 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.125 0.875 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.409 0.636 -9.012 9.656 hybrid contribution 1.215 0.502 -1.096 1.711 sum 4.624 1.138 -10.108 11.173 Atomic orbital electron populations 1.22229 0.95928 1.02211 1.02414 1.21391 0.94888 0.82399 1.01828 1.47833 1.67596 1.14283 1.05285 1.21401 0.93127 0.99571 0.86369 1.22607 0.91092 0.96879 0.88570 0.92660 1.22223 1.01687 1.02027 0.96968 1.88151 1.24566 1.57214 1.57910 1.22715 0.86837 0.96341 1.00460 1.21132 0.73218 0.87346 0.84998 1.90566 1.47813 1.16836 1.86946 1.18151 0.97282 0.94540 0.87318 0.92495 1.21422 0.92203 1.11536 1.36561 0.92627 1.25746 1.05870 0.92672 0.93016 1.70791 1.05378 1.37369 1.39395 0.83636 0.74185 0.76560 0.76685 1.20661 1.21285 1.21056 1.20186 0.92125 0.93596 0.96633 1.20851 0.98482 0.94656 0.94756 1.21005 0.96152 0.99539 0.98656 1.20805 0.98129 0.96025 1.01436 1.20845 0.99709 0.95696 0.98727 1.20935 0.95436 0.99483 0.98730 0.89496 0.94242 0.92539 0.92782 0.89538 0.90279 0.89569 0.91784 0.91606 0.92656 0.89987 0.94501 0.94864 0.91630 0.86627 0.87502 0.87659 0.87585 0.87600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.83 10.13 37.16 0.38 -2.45 16 2 C 0.12 2.00 5.85 -4.04 -0.02 1.97 16 3 N -0.62 -11.55 2.43 -173.68 -0.42 -11.97 16 4 C 0.12 1.88 5.22 -4.04 -0.02 1.86 16 5 C 0.07 0.97 2.99 -26.73 -0.08 0.89 16 6 H 0.06 0.73 7.79 -51.93 -0.40 0.32 16 7 C -0.17 -1.92 9.53 37.16 0.35 -1.56 16 8 O -0.36 -6.28 9.20 -36.52 -0.34 -6.61 16 9 C 0.03 0.46 10.82 101.05 1.09 1.56 16 10 C 0.54 12.31 6.19 -10.99 -0.07 12.24 16 11 O -0.55 -13.74 14.16 4.27 0.06 -13.67 16 12 C 0.05 1.15 1.16 -94.07 -0.11 1.04 16 13 H 0.06 1.38 4.82 -51.93 -0.25 1.13 16 14 C -0.58 -14.66 5.48 -34.44 -0.19 -14.84 16 15 H 0.06 1.47 7.80 -52.49 -0.41 1.06 16 16 C 0.03 0.87 5.45 -17.82 -0.10 0.77 16 17 N -0.90 -24.45 13.63 55.43 0.76 -23.69 16 18 Si 1.06 23.49 29.91 -169.99 -5.08 18.40 16 19 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 22 C -0.02 -0.58 4.43 -104.62 -0.46 -1.05 16 23 C -0.07 -1.64 8.01 -39.59 -0.32 -1.95 16 24 C -0.14 -2.80 10.05 -39.59 -0.40 -3.19 16 25 C -0.15 -2.80 10.05 -39.59 -0.40 -3.20 16 26 C -0.13 -2.60 10.05 -39.58 -0.40 -2.99 16 27 C -0.13 -2.81 9.48 -39.58 -0.38 -3.19 16 28 H 0.09 1.74 6.23 -51.93 -0.32 1.41 16 29 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.05 0.74 8.09 -51.93 -0.42 0.32 16 32 H 0.09 1.66 5.77 -51.93 -0.30 1.36 16 33 H 0.08 1.01 8.07 -51.93 -0.42 0.59 16 34 H 0.09 1.53 7.35 -51.93 -0.38 1.15 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 40 H 0.03 0.38 7.87 -51.93 -0.41 -0.03 16 41 H 0.27 7.38 6.46 -40.82 -0.26 7.11 16 42 H 0.12 2.85 7.68 -52.48 -0.40 2.44 16 43 H 0.11 1.91 8.06 -52.48 -0.42 1.49 16 44 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 45 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 46 H 0.11 2.20 7.96 -52.49 -0.42 1.78 16 LS Contribution 372.23 15.07 5.61 5.61 Total: -1.00 -30.59 372.23 -7.94 -38.53 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -7.41 Total: 7.51 kcal Atomic # 6 Polarization: -12.99 SS G_CDS: -1.11 Total: -14.10 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: 0.33 Total: -35.66 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.28 Total: -20.29 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.08 Total: 18.40 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -30.59 -7.94 -38.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361690714.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.475 kcal (2) G-P(sol) polarization free energy of solvation -30.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds